Publication Records

CHALOUPKOVÁ, Radka, Zbyněk PROKOP, Tomáš MOZGA, Yukari SATO, Táňa KOUDELÁKOVÁ, D.B. JANSSEN, Yuji NAGATA, T. SENDA and Jiří DAMBORSKÝ. Thermodynamic Analysis of Enantioselectivity of Haloalkane Dehalogenase DbjA and its Variants DbjA and DbjA+H139A towards Brominated Esters and substituted Bromoalkanes. 2008.

BREZOVSKÝ, Jan, Marta MONINCOVÁ, Zbyněk PROKOP, Yukari SATO, Yuji NAGATA, R.C. WADE and Jiří DAMBORSKÝ. Comparative Binding Energy Analysis of Haloalkane Dehalogenase from Bradyrhizobium japonicum USDA110. 2007.

BREZOVSKÝ, Jan, Marta MONINCOVÁ, Zbyněk PROKOP, Yukari SATO, Yuji NAGATA, R.C. WADE and Jiří DAMBORSKÝ. Comparative Binding Energy (COMBINE) Analysis of the Substrate Specificity of Haloalkane Dehalogenase from Bradyrhizobium japonicum USDA110. 2007.

NĚMEC, Tomáš and Zdeněk GLATZ. Integration of short-end injection procedure into EMMA methodology. Journal of Chromatography A. Amsterdam: Elsevier, 2007, vol. 1155, 1-2, p. 206-213, 5 pp. ISSN 0021-9673.

PAPEŽOVÁ, Kateřina, Tomáš NĚMEC, Radka CHALOUPKOVÁ and Zdeněk GLATZ. Study of substrate inhibition by electrophoretically mediated microanalysis in partially filled capillary. Journal of Chromatography A. Amsterdam: Elsevier, 2007, vol. 1150, 1-2, p. 327-331. ISSN 0021-9673.

PAVLOVÁ, Martina, Martin KLVAŇA, Andrea JESENSKÁ, Zbyněk PROKOP, Hana KONEČNÁ, Yukari SATO, M. TSUDA, Yuji NAGATA and Jiří DAMBORSKÝ. The Identification of Catalytic Pentad in the Haloalkane Dehalogenase DhmA from Mycobacterium avium N85: Reaction Mechanism and Molecular Evolution. Journal of Structural Biology. 2007, vol. 157, No 2, p. 384-392. ISSN 1047-8477.

PAVLOVÁ, Martina, Andrea FOŘTOVÁ, Martin KLVAŇA, Pavel BANÁŠ, Michal OTYEPKA, Yuji NAGATA and Jiří DAMBORSKÝ. Computer-assisted Directed Evolution of Haloalkane Dehalogenase DhaA Towards Degradation of 1,2,3-Trichloropropane. 2006.

KOUDELÁKOVÁ, Táňa, Zbyněk PROKOP, Yukari SATO, Marta MONINCOVÁ, Andrea FOŘTOVÁ, Lucie GRODECKÁ, T. SENDA, Yuji NAGATA and Jiří DAMBORSKÝ. Engineering of Haloalkane Dehalogenase DhaA from Rhodococcus rhodochrous NCIMB 13064 Towards Higher Enantioselectivity. 2006.

MONINCOVÁ, Marta, Andrea FOŘTOVÁ, Radka CHALOUPKOVÁ, Yukari SATO, Zbyněk PROKOP and Jiří DAMBORSKÝ. High-throughput characterization of enzymes from genomic and proteomic projects-multivariate statistical approach. In Materials Structure in Chemistry, Biology, Physics and Technology. 2006.

MONINCOVÁ, Marta, Yuji NAGATA, Radka CHALOUPKOVÁ, Zbyněk PROKOP, Andrea FOŘTOVÁ, Martina PAVLOVÁ, Masataka TSUDA and Jiří DAMBORSKÝ. Protein engineering of haloalkane dehalogenase LinB: reconstruction of active site and modification of entrance tunnel. In Book of Abstracts, 10th International Symposium of the Genetics of Industrial Microorganisms. 1st ed. Praha: Institute of Microbiology ASCR, 2006, p. 160-161. ISBN 80-239-7323-1.

CHALOUPKOVÁ, Radka, Zbyněk PROKOP, Monika STRAKOVÁ, Tomáš MOZGA and Jiří DAMBORSKÝ. The stereoselectivity and Conformational Stability of Haloalkane Dehalogenase DbjA from Bradyrhizobium japonicum USDA110: The Effect of Temperature and pH. 2006.

PROKOP, Zbyněk, Marta MONINCOVÁ, Radka CHALOUPKOVÁ, Martin KLVAŇA, Dick JANSSEN, Yuji NAGATA and Jiří DAMBORSKÝ. : Catalytic Mechanism of Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26. 2004.

OAKLEY, Aaron, Martin KLVAŇA, Michal OTYEPKA, Yuji NAGATA, Matthew WILCE and Jiří DAMBORSKÝ. Crystal Structure of Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A Resolution: Dynamics of Catalytic Residues. Biochemistry. USA, 2004, vol. 43, No 43, p. 870-878, 8 pp. ISSN 0006-2960.

KLVAŇA, Martin, Martina PAVLOVÁ, Andrea JESENSKÁ, Hana KONEČNÁ, Yuji NAGATA and Jiří DAMBORSKÝ. Homology Modelling of the Haloalkane Dehalogenase DhmA: Identification of Catalytic Residues. 2004.

JESENSKÁ, Andrea, Zbyněk PROKOP and Jiří DAMBORSKÝ. Protein Engineering of Bacterial Enzymes Haloalkane Dehalogenases. 2004.

MONINCOVÁ, Marta, Yuji NAGATA, Zbyněk PROKOP, Andrea JESENSKÁ, Soňa MARVANOVÁ, Jana SÝKOROVÁ, Tsuda MASATAKA and Jiří DAMBORSKÝ. Reconstruction of Mycobacterial Protein Rv2579 in Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26. In 6th International Conference on Protein Stabilization. Bratislava, Slovakia: Slovak Society of Chemical Engineering, 2004, p. 41.

MONINCOVÁ, Marta, Yuji NAGATA, Zbyněk PROKOP, Andrea JESENSKÁ, Soňa MARVANOVÁ, Jana SÝKOROVÁ, Masataka TSUDA and Jiří DAMBORSKÝ. Reconstruction of Mycobacterial Protein Rv2579 in Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26. 2004.

MONINCOVÁ, Marta, Yukari SATO, Iva TĚŠÍNSKÁ, Andrea JESENSKÁ, Zbyněk PROKOP and Jiří DAMBORSKÝ. Substrate specificity of haloalkane dehalogenases. In SATO, Yukari, Iva TĚŠÍNSKÁ, Andrea JESENSKÁ, Zbyněk PROKOP and Jiri DAMBORSKY. Materials Structure in Chemistry, Biology, Physics and Technology. Praha: Czech and Slovak Crystallographic Association, 2004, p. 32-33.

ERIKSSON, Lennart, Jiří DAMBORSKÝ, Matthew EARLL, Erik JOHANSSON, Johan TRYGG and Svante WOLD. Three-Block Bi-Focal PLS (3BIF-PLS) and its Application in QSAR. SAR and QSAR in Environmental Research. USA, 2004, 5-6, No 15, p. 481-499, 18 pp. ISSN 1062-936X.

PROKOP, Zbyněk, Marta MONINCOVÁ, Radka CHALOUPKOVÁ, Martin KLVAŇA, Yuji NAGATA, Dick B. JANSSEN and Jiří DAMBORSKÝ. Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Journal of Biological Chemistry. 2003, vol. 278, No 46, p. 45094-45100. ISSN 0021-9258.

TELNAROVÁ, Magdalena, Soňa NOVÁKOVÁ and Zdeněk GLATZ. Determination of The Kinetic Parameters of Haloalkane Dehalogenase by EMMA In a Partially Filled Capillary. In Proceeding of 27th Symposium on HPLC and Related Techniques. Nice, France: MCI Paris France, 2003, p. 133-133.

JESENSKÁ, Andrea, Milan BARTOŠ, Vladimíra CZERNEKOVÁ, Ivan RYCHLÍK, Ivo PAVLÍK and Jiří DAMBORSKÝ. Cloning, expression and preliminary characterization of novel haloalkane dehalogenase DhmA from Mycobacterium avium N85. Applied and Environmental Microbiology. 2002, vol. 68, No 8, p. 3724-7453. ISSN 1098-5336.

GLATZ, Zdeněk, María Victoria MARINI PALOMEQUE, Michaela WIMMEROVÁ, Jiří DAMBORSKÝ and Yuji NAGATA. Determination of haloalkane dehalogenase enzymatic activity by capillary zone electrophoresis. Journal of Chromatography A. Netherlands: Elsevier, 2000, vol. 895, 1-2, p. 219-225. ISSN 0021-9606.

GLATZ, Zdeněk, María Victoria MARINI PALOMEQUE and Michaela WIMMEROVÁ. Determination of haloalkane dehalogenase enzymatic activity by capillary zone electrophoresis. In Book of Abstract "13th International symposium on high performance capillary electrophoresis and related techniques HPCE 2000". Saarbrucken, Germany: Universites des Saarlandes, Germany, 2000, p. 191.

GLATZ, Zdeněk, María Victoria MARINI PALOMEQUE, Michaela WIMMEROVÁ, Jiří DAMBORSKÝ and Yuji NAGATA. Rapid detection of haloalkane dehalogenase activity by capillary zone electrophoresis. Chemické Listy. Praha: Česká společnost chemická, 2000, vol. 94, No 8, p. 588-589. ISSN 0009-2770.

PROKOP, Martin, Jiří DAMBORSKÝ and Jaroslav KOČA. TRITON: in silico construction of protein mutants and prediction of their activities. Bioinformatics. 2000, vol. 16, No 9, p. 845-846. ISSN 1367-4803.