Publication Records

DUNLOP, David, Peter HORVÁTH, Petr KLÁN, Tomáš SLANINA and Peter ŠEBEJ. Central Ring Puckering Enhances the Stokes Shift of Xanthene Dyes. Chemistry - A European Journal. Weinheim: WILEY- VCH VERLAG GMBH, 2024, vol. 30, No 19, p. 1-7. ISSN 0947-6539. Available from: https://dx.doi.org/10.1002/chem.202400024.

ŠEBEJ, Peter and Jakub URÍK. Evolution of environmental chemistry study program curricula in tertiary education: a case study and general implications. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. GERMANY: SPRINGER HEIDELBERG, 2024. ISSN 0944-1344. Available from: https://dx.doi.org/10.1007/s11356-024-33756-2.

ŠIMEČKOVÁ, Hana, Radka OBOŘILOVÁ, Matěj PASTUCHA, Jan PŘIBYL, Petr SKLÁDAL, Roman PANTŮČEK, Zdeněk FARKA and Ivana MAŠLAŇOVÁ. Advanced Microscopic and Biosensing Approaches for Monitoring Bacteriophage-Mediated Lysis of Bacteria. In 6th World Congress on Targeting Phage Therapy. 2023.

MARTÍNEK, Marek, Lucie LUDVÍKOVÁ, Mária ŠRANKOVÁ, Rafael NAVRÁTIL, Lucie MUCHOVÁ, Jiří HUZLÍK, Libor VÍTEK, Petr KLÁN and Peter ŠEBEJ. Common xanthene fluorescent dyes are visible-light activatable CO-releasing molecules. Organic and Biomolecular Chemistry. Royal Society of Chemistry, 2023, vol. 21, No 1, p. 93-97. ISSN 1477-0520. Available from: https://dx.doi.org/10.1039/d2ob01823c.

FARKA, Zdeněk. Advanced Immunochemical Biosensors and Assays: From Label-Free to Single-Molecule Detection. In Invited lecture in Lumito AB. 2022.

ŠRANKOVÁ, Mária, Aleš DVOŘÁK, Marek MARTÍNEK, Peter ŠEBEJ, Petr KLÁN, Libor VÍTEK and Lucie MUCHOVÁ. Antiproliferative and Cytotoxic Activities of Fluorescein-A Diagnostic Angiography Dye. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2022, vol. 23, No 3, p. 1-13. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms23031504.

HLAVÁČEK, Antonín, Zdeněk FARKA, Matthias Jürgen MICKERT, Uliana KOSTIV, Julian BRANDMEIER, Daniel HORÁK, Petr SKLÁDAL, František FORET and Hans-Heiner GORRIS. Bioconjugates of photon-upconversion nanoparticles for cancer biomarker detection and imaging. Nature Protocols. Springer Nature, 2022, vol. 17, April 2022, p. 1028-1072. ISSN 1754-2189. Available from: https://dx.doi.org/10.1038/s41596-021-00670-7.

FARKA, Zdeněk. Biosenzory a imunostanovení pro detekci klinicky významných analytů. In Zvaná přednáška na Univerzitě Pardubice. 2022.

ŠIŠOLÁKOVÁ, Ivana, Ondrej PETRUŠ, Jana SHEPA, Zdeněk FARKA, Andrej ORIŇÁK and Renáta ORIŇAKOVÁ. Colloidal lithography as a novel approach for the development of Ni-nanocavity insulin sensor. Scientific Reports. Springer Nature, 2022, vol. 12, No 1, p. 1-12. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-022-15283-7.

SKLENÁROVÁ, Dorota, Ekaterina MAKHNEVA, Julian BRANDMEIER, Hans-Heiner GORRIS and Zdeněk FARKA. Detection of cancer biomarkers using immunoassays with upconversion nanoparticles and magnetic preconcentration. In 21. Interdisciplinary meeting of young life scientists. 2022. ISSN 2336-7202.

MACHÁČOVÁ, Eliška and Zdeněk FARKA. Detekce proteinových biomarkerů pomocí lateral flow testů s foton-upkonverzními nanočásticemi (Detection of protein biomarkers using lateral flow tests with photon-upconversion nanoparticles). Online. In J. Barek, V. Vyskočil. Czech Chem. Soc. Symp. Ser. 20, 335–339 (2022). Praha: Czech Chemical Society Symposium Series, 2022, p. 335-339. ISSN 2336-7202. Available from: https://dx.doi.org/10.54779/ccsss20220335.

MAŠLAŇOVÁ, Ivana, Lucie KUNTOVÁ, Radka OBOŘILOVÁ, Vilém SVOJANOVSKÝ, Zdeněk FARKA, Jan PREISLER and Roman PANTŮČEK. Development of direct detection methods for monitoring of therapeutic staphylococcal bacteriophages in clinical samples. In NIVB Meeting 2022. 2022. ISSN 2336-7210.

TRNKOVÁ, Libuše, Iveta TŘÍSKOVÁ and Zdeněk FARKA. Electrochemical Analysis of Insulin on Graphite Electrodes. In Navrátil, Tomáš; Fojta, Miroslav; Schwarzová. 41. Moderní elektrochemické metody : Sborník přednášek. Ústí nad Labem: Best Servis, 2022, p. 200-203. ISBN 978-80-905221-9-0.

KAISER, Jozef, Karolína VYTISKOVÁ, Karel NOVOTNÝ, Zdeněk FARKA, Petr SKLÁDAL and Pavel POŘÍZKA. Enhancing the sensitivity of laser-induced breakdown spectroscopy for the detection of nanoparticle-labeled cancerous tissues. In European Symposium on Analytical Spectrometry (ESAS) 2022. 2022. ISBN 978-80-88195-41-2.

LEVIEN, Monique, Zdeněk FARKA, Matěj PASTUCHA, Petr SKLÁDAL, Zahra NASRI, Klaus-Dieter WELTMANN and Katja FRICKE. Functional plasma-polymerized hydrogel coatings for electrochemical biosensing. Applied Surface Science. Elsevier, 2022, vol. 584, May, p. 1-8. ISSN 0169-4332. Available from: https://dx.doi.org/10.1016/j.apsusc.2022.152511.

SKLENÁROVÁ, Dorota, Ekaterina MAKHNEVA, Julian BRANDMEIER, Hans-Heiner GORRIS and Zdeněk FARKA. Immunomagnetic Assay Using Upconversion Nanoparticles for the Detection of Prostate-Specific Antigen. In NANOCON 2022. 2022. ISBN 978-80-88365-07-5.

MAKHNEVA, Ekaterina, Dorota SKLENÁROVÁ, Julian BRANDMEIER, Antonín HLAVÁČEK, Hans-Heiner GORRIS, Petr SKLÁDAL and Zdeněk FARKA. Influence of Label and Solid Support on the Performance of Heterogeneous Immunoassays. Analytical Chemistry. Washington, DC: American Chemical Society, 2022, vol. 94, No 47, p. 16376-16383. ISSN 0003-2700. Available from: https://dx.doi.org/10.1021/acs.analchem.2c03543.

KAISER, Jozef, Karolína VYTISKOVÁ, Karel NOVOTNÝ, Zdeněk FARKA, Petr SKLÁDAL and Pavel POŘÍZKA. Laser-Induced Breakdown Spectroscopy for indirect detection of breast cancer cells through characteristic nanoparticle labeling. In LIBS2022. 2022.

MACHÁČOVÁ, Eliška, Julian BRANDMEIER, Hans-Heiner GORRIS, Petr SKLÁDAL and Zdeněk FARKA. Lateral flow immunoassay based on photon-upconversion nanoparticles for the detection of protein biomarkers. In NANOCON 2022. 2022. ISBN 978-80-88365-07-5.

ŠIMEČKOVÁ, Hana, Radka OBOŘILOVÁ, Matěj PASTUCHA, Jan PŘIBYL, Petr SKLÁDAL, Roman PANTŮČEK, Ivana MAŠLAŇOVÁ and Zdeněk FARKA. Phage-mediated bacterial lysis studied by AFM and SPR. In Genetická konference GSGM 2022 a XXIX. Genetické dny. 2022. ISBN 978-80-7302-182-5.

SHAPOVAL, Oleksandr, Julian BRANDMEIER, Mykhailo NAHORNIAK, Viktoriia OLEKSA, Ekaterina MAKHNEVA, Hans-Heiner GORRIS, Zdeněk FARKA and Daniel HORÁK. PMVEMA-coated upconverting nanoparticles for upconversion-linked immunoassay of cardiac troponin. Talanta. Elsevier, 2022, vol. 244, No 123400, p. 1-8. ISSN 0039-9140. Available from: https://dx.doi.org/10.1016/j.talanta.2022.123400.

PILIPENCO, Alina, Guruprakash SUBBIAHDOSS, Michala FORINOVÁ, Hana ŠIMEČKOVÁ, Markéta VRABCOVÁ, Nicholas Scott LYNN, Zdeněk FARKA, Erik REIMHULT and Hana VAISOCHEROVÁ-LÍSALOVÁ. Poly(HPMAA-co-CBMAA-co-SBMAA) brush coatings with antifouling properties improve the direct detection of bacterial pathogens in complex food samples. In MeSSAC 2022. 2022.

KUNTOVÁ, Lucie, Ivana MAŠLAŇOVÁ, Radka OBOŘILOVÁ, Hana ŠIMEČKOVÁ, Adéla FINSTRLOVÁ, Pavol BÁRDY, Tibor BOTKA, Zdeněk FARKA, Jiří DOŠKAŘ and Roman PANTŮČEK. Rather die than be taken by the phage: Staphylococcus aureus prophage immunity protein protects population against kayviruses. In NIVB Meeting 2022. 2022. ISSN 2336-7210.

GORRIS, Hans-Heiner and Zdeněk FARKA. Up and down the spectrum: upconversion nanocrystal and semiconductor material fused into a single nanocomposite. Light: Science & Applications. Springer Nature, 2022, vol. 11, No 179, p. 1-3. ISSN 2047-7538. Available from: https://dx.doi.org/10.1038/s41377-022-00875-9.

MAKHNEVA, Ekaterina, Dorota SKLENÁROVÁ, Julian BRANDMEIER, Hans-Heiner GORRIS, Petr SKLÁDAL and Zdeněk FARKA. Upconversion immunoassay with magnetic separation for the detection of cancer biomarkers. In 7th International Conference on Bio-Sensing Technology. 2022.

GORRIS, Hans-Heiner, Julian BRANDMEIER, Zdeněk FARKA, Petr SKLÁDAL, Antonín HLAVÁČEK, Matthias Jürgen MICKERT, Riikka PELTOMAA, Tero SOUKKA, Elena BENITO-PEÑO and María C. MORENO-BONDI. Upconversion-linked immunoassays (ULISA) for food and environmental monitoring and single-molecule (digital) diagnostic assays. In XXVIII Reunión Bienal de la Real Sociedad Española de Química (RSEQ) Granada. 2022. ISBN 978-84-09-42159-6.

FARKA, Zdeněk. Advanced Immunochemical Biosensing: From Label-Free to Single-Molecule Detection. In Odborný workshop projektu Nanobio, Kraskov. 2021.

FARKA, Zdeněk. Advanced Immunochemical Biosensors and Assays: From Label-Free to Single-Molecule Detection. In Invited lecture at the Department of Chemistry, Faculty of Science, Masaryk University. 2021.

OBOŘILOVÁ, Radka, Hana ŠIMEČKOVÁ, Matěj PASTUCHA, Šimon KLIMOVIČ, Ivana VÍŠOVÁ, Jan PŘIBYL, Hana VAISOCHEROVÁ-LÍSALOVÁ, Roman PANTŮČEK, Petr SKLÁDAL, Ivana MAŠLAŇOVÁ and Zdeněk FARKA. Atomic force microscopy and surface plasmon resonance for real-time single-cell monitoring of bacteriophage-mediated lysis of bacteria. Nanoscale. Cambridge: Royal Society of Chemistry, 2021, vol. 13, No 31, p. 13538-13549. ISSN 2040-3364. Available from: https://dx.doi.org/10.1039/D1NR02921E.

PASTUCHA, Matěj, Eliška ODSTRČILÍKOVÁ, Veronika POLÁCHOVÁ, Julian BRANDMEIER, Antonín HLAVÁČEK, Hans-Heiner GORRIS, Zdeněk FARKA and Petr SKLÁDAL. Detection of honeybee bacterial pathogens with upconversion-linked immunosorbent assay. In UPCONline 2021. 2021.

PETRUŠ, Ondrej, Ján MACKO, Renáta ORIŇAKOVÁ, Andrej ORIŇAK, Erika MÚDRA, Miriam KUPKOVÁ, Zdeněk FARKA, Matěj PASTUCHA and Socha VLADIMÍR. Detection of organic dyes by surface-enhanced Raman spectroscopy using plasmonic NiAg nanocavity films. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. Oxford: Elsevier, 2021, vol. 249, March 2021, p. "119322", 12 pp. ISSN 1386-1425. Available from: https://dx.doi.org/10.1016/j.saa.2020.119322.

GORRIS, Hans-Heiner, Matthias Jürgen MICKERT, Zdeněk FARKA, Uliana KOSTIV, Antonín HLAVÁČEK, Daniel HORÁK and Petr SKLÁDAL. Digital detection of subfemtomolar concentrations of prostate-specific antigen by single molecule immunosensing. In 31st Anniversary World Congress on Biosensors. 2021.

BRANDMEIER, Julian, Kirsti RAIKO, Zdeněk FARKA, Riikka PELTOMAA, Matthias Jürgen MICKERT, Antonín HLAVÁČEK, Petr SKLÁDAL, Tero SOUKKA and Hans-Heiner GORRIS. Effect of Particle Size and Surface Chemistry of Photon-Upconversion Nanoparticles on Analog and Digital Immunoassays for Cardiac Troponin. Advanced Healthcare Materials. Wiley-VCH, 2021, vol. 10, No 18, p. 1-9. ISSN 2192-2640. Available from: https://dx.doi.org/10.1002/adhm.202100506.

BRANDMEIER, Julian, Kirsti RAIKO, Zdeněk FARKA, Riikka PELTOMAA, Matthias Jürgen MICKERT, Antonín HLAVÁČEK, Petr SKLÁDAL, Tero SOUKKA and Hans-Heiner GORRIS. Highly sensitive immunoassay for human cardiac troponin based on photon-upconversion nanoparticles. In UPCONline 2021. 2021.

FARKA, Zdeněk. Immunochemical sensing with photon-upconversion nanoparticles: From analog to digital format. In Přednáškové odpoledne na Fyzikálním ústavu AV ČR. 2021.

MACHÁČOVÁ, Eliška, Matěj PASTUCHA, Dorota SKLENÁROVÁ, Petr SKLÁDAL and Zdeněk FARKA. Imunostanovení ULISA pro detekci včelích patogenů (Immunoassay ULISA for the detection of honeybee pathogens). 2021.

POŘÍZKA, Pavel, Karolína VYTISKOVÁ, Radka OBOŘILOVÁ, Matěj PASTUCHA, Ivan GÁBRIŠ, Julian C. BRANDMEIER, Pavlína MODLITBOVÁ, Hans-Heiner GORRIS, Karel NOVOTNÝ, Petr SKLÁDAL, Jozef KAISER and Zdeněk FARKA. Laser-induced breakdown spectroscopy as a readout method for immunocytochemistry with upconversion nanoparticles. Microchimica Acta. Springer-Verlag GmbH Austria, 2021, vol. 188, No 5, p. "147", 10 pp. ISSN 0026-3672. Available from: https://dx.doi.org/10.1007/s00604-021-04816-y.

PASTUCHA, Matěj, Martin POTRUSIL, Zdeněk FARKA and Peter ŠEBEJ. Near-infrared polymethine fluorophores for targeted biomarker detection. In XX. Interdisciplinary meeting of young life scientists. 2021.

FARKA, Zdeněk, Matthias Jürgen MICKERT, Antonín HLAVÁČEK, Hans-Heiner GORRIS and Petr SKLÁDAL. Photon-upconversion nanoparticles as a background-free label in immunosensing and bioimaging. In 31st Anniversary World Congress on Biosensors. 2021.

MACHÁČOVÁ, Eliška, Julian BRANDMEIER, Dorota SKLENÁROVÁ, Hans-Heiner GORRIS, Petr SKLÁDAL and Zdeněk FARKA. Photon-upconversion nanoparticles as a background-free label in lateral flow immunoassays. In NANOCON 2021. 2021. ISBN 978-80-88365-00-6.

FARKA, Zdeněk, Matthias Jürgen MICKERT, Hans-Heiner GORRIS and Petr SKLÁDAL. Photon-upconversion nanoparticles for single-molecule biosensing and imaging. In XX. Interdisciplinary meeting of young life scientists. 2021.

FARKA, Zdeněk, Matthias Jürgen MICKERT, Antonín HLAVÁČEK, Petr SKLÁDAL and Hans-Heiner GORRIS. Photon-upconversion nanoparticles for single-molecule immunoassays. In EUROPT(R)ODE 2021. 2021.

SKLENÁROVÁ, Dorota, Eliška MACHÁČOVÁ, Matěj PASTUCHA, Petr SKLÁDAL and Zdeněk FARKA. Photon-upconversion nanoparticles for the detection of honeybee pathogen Paenibacillus larvae. Online. In Libuše Trnková. XXI. Workshop of Biophysical Chemists and Electrochemists. Brno: Masaryk University Press, 2021, p. 73-74. ISBN 978-80-210-9943-2.

TRNKOVÁ, Libuše, Iveta TŘÍSKOVÁ, Jan ČECHAL and Zdeněk FARKA. Polymer pencil leads as a porous nanocomposite graphite material for electrochemical applications: The impact of chemical and thermal treatments. Electrochemistry Communications. Elsevier Inc., 2021, vol. 126, May, p. "107018", 7 pp. ISSN 1388-2481. Available from: https://dx.doi.org/10.1016/j.elecom.2021.107018.

TŘÍSKOVÁ, Iveta, Jakub VĚŽNÍK, Jan ČECHAL, Zdeněk FARKA and Libuše TRNKOVÁ. Unique electrochemical properties of polymer pencil graphite leads. In XXI. Workshop of Biophysical Chemists and Electrochemists. 2021. ISBN 978-80-210-9943-2.

FARKA, Zdeněk, Matthias Jürgen MICKERT, Riikka PELTOMAA, Antonín HLAVÁČEK, Petr SKLÁDAL and Hans-Heiner GORRIS. Upconversion immunoassays for environmental control, food safety, and biomedicine. In UPCONline 2021. 2021.

FARKA, Zdeněk. Upconversion immunoassays for honeybee pathogens: Finalization of joint research project. In Workshop on Czech-Bavarian Research Project "Luminescent immunodetection as a sensitive tool for diagnostic of bee diseases" at Institute of Macromolecular Chemistry. 2021.

MICKERT, Matthias Jürgen, Zdeněk FARKA, Krzysztof KRAWCZYK, Antonín HLAVÁČEK, Julian BRANDMEIER, Stefan ANDERSSON-ENGELS, Anders SJÖGREN, Petr SKLÁDAL and Hans-Heiner GORRIS. Upconversion nanoparticles as labels for histopathological tissue evaluation. In UPCONline 2021. 2021.

PASTUCHA, Matěj, Eliška ODSTRČILÍKOVÁ, Antonín HLAVÁČEK, Julian BRANDMEIER, Vít VYKOUKAL, Julie WEISOVÁ, Hans-Heiner GORRIS, Petr SKLÁDAL and Zdeněk FARKA. Upconversion-Linked Immunoassay for the Diagnosis of Honeybee Disease American Foulbrood. IEEE Journal of Selected Topics in Quantum Electronics. IEEE, 2021, vol. 27, No 5, p. 1-11. ISSN 1077-260X. Available from: https://dx.doi.org/10.1109/JSTQE.2021.3049689.

PASTUCHA, Matěj, Zdeněk FARKA, Peter ŠEBEJ, Antonín HLAVÁČEK and Petr SKLÁDAL. Near-infrared luminescent labels for immunochemical assays and imaging. In 72. sjezd českých a slovenských chemických společností. 2020. ISSN 2336-7202.

PASTUCHA, Matěj, Martin POTRUSIL, Zdeněk FARKA and Peter ŠEBEJ. Near-infrared Polymethine Dyes for Targeted Biomarker Detection. In XXth Interdisciplinary Meeting of Young Researchers and Students in the Field of Chemistry, Biochemistry, Molecular Biology, and Biomaterials. 2020. ISSN 2336-7202.

PASTUCHA, Matěj, Martin POTRUSIL, Zdeněk FARKA and Peter ŠEBEJ. NEAR-INFRARED POLYMETHINE DYES FOR TARGETED BIOMARKER DETECTION. In XXth INTERDISCIPLINARY MEETING OF YOUNG RESEARCHERS AND STUDENTS IN THE FIELD OF CHEMISTRY, BIOCHEMISTRY, MOLECULAR BIOLOGY, AND BIOMATERIALS. 2020.

MARTÍNEK, Marek, Jiri VANA, Peter ŠEBEJ, Rafael NAVRATIL, Tomáš SLANINA, Lucie LUDVÍKOVÁ, Jana ROITHOVÁ and Petr KLÁN. Photochemistry of a 9-Dithianyl-Pyronin Derivative: A Cornucopia of Reaction Intermediates Lead to Common Photoproducts. ChemPlusChem. Weinheim: Wiley - Verlag Chemie, 2020, vol. 85, No 10, p. 2230-2242. ISSN 2192-6506. Available from: https://dx.doi.org/10.1002/cplu.202000370.

HORVÁTH, Peter, Peter ŠEBEJ, David KOVÁŘ, Jiří DAMBORSKÝ, Zbyněk PROKOP and Petr KLÁN. Fluorescent pH Indicators for Neutral to Near-Alkaline Conditions Based on 9-Iminopyronin Derivatives. ACS Omega. WASHINGTON: American Chemical Society, 2019, vol. 4, No 3, p. 5479-5485. ISSN 2470-1343. Available from: https://dx.doi.org/10.1021/acsomega.9b00362.

HENKE, Adam, Yekaterina KOVALYOVA, Matthew DUNN, Dominik DREIER, Niko G. GUBERNATOR, Iva DINCHEVA, Christopher HWU, Peter ŠEBEJ, Mark S. ANSORGE, David SULZER and Dalibor SAMEŠ. Toward Serotonin Fluorescent False Neurotransmitters: Development of Fluorescent Dual Serotonin and Vesicular Monoamine Transporter Substrates for Visualizing Serotonin Neurons. ACS CHEMICAL NEUROSCIENCE. WASHINGTON: AMER CHEMICAL SOC, 2018, vol. 9, No 5, p. 925-934, 19 pp. ISSN 1948-7193. Available from: https://dx.doi.org/10.1021/acschemneuro.7b00320.

SLANINA, Tomáš and Peter ŠEBEJ. Visible-light-activated photoCORMs: rational design of CO-releasing organic molecules absorbing in the tissue-transparent window. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES. CAMBRIDGE: ROYAL SOC CHEMISTRY, 2018, vol. 17, No 6, p. 692-710. ISSN 1474-905X. Available from: https://dx.doi.org/10.1039/c8pp00096d.