Výpis publikací

HRADISKÁ, Helena, Martin KUREČKA, Jan BERÁNEK, Guglielmo TEDESCHI, Vladimír VIŠŇOVSKÝ, Aleš KŘENEK a Vojtěch SPIWOK. Acceleration of Molecular Simulations by Parametric Time-Lagged tSNE Metadynamics. The Journal of Physical Chemistry B. 2024. ISSN 1520-6106. Dostupné z: https://dx.doi.org/10.1021/acs.jpcb.3c05669.

RUMAN, Ádám, Martin DRAŠAR, Lukáš SADLEK, Shanchieh Jay YANG a Pavel ČELEDA. Adversary Tactic Driven Scenario and Terrain Generation with Partial Infrastructure Specification. Online. In The 19th International Conference on Availability, Reliability and Security (ARES 2024) [to appear]. ACM, 2024, 11 s. Dostupné z: https://dx.doi.org/10.1145/3664476.3664523.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL a Matej ANTOL. AlphaFind: Discover structure similarity across the entire known proteome. bioRxiv, 2024.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL a Matej ANTOL. AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research. Oxford: Oxford University Press, 2024, Neuveden, May 15, s. 1-5. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkae397.

HÁJEK, Adam a Aleš HORÁK. CzeGPT-2 – Training New Model for Czech Generative Text Processing Evaluated with the Summarization Task. IEEE ACCESS. UNITED STATES: IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2024, roč. 2024, č. 12, s. 34570-34581. ISSN 2169-3536. Dostupné z: https://dx.doi.org/10.1109/ACCESS.2024.3371689.

SVOBODA, Tomáš a Adrián ROŠINEC. Data workflows at CEITEC MU. In Setkání OS metodiků MU. 2024.

ANTOL, Matej, Jiří MAREK, Michaela CAPANDOVÁ, Jaroslav JURÁČEK a Luděk MATYSKA. EOSC CZ: Towards the development of Czech national ecosystem for FAIR research data. arXiv, 2024, 2 s.

VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL a Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. PLOS ONE. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2024, roč. 6, č. 19, s. 1-13. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0302269.

DAUBNER, Lukáš, Sofija MAKSOVIĆ, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ a Tomáš SEDLÁČEK. Forensic-Ready Analysis Suite: A Tool Support for Forensic-Ready Software Systems Design. Online. In International Conference on Research Challenges in Information Science (RCIS 2024). Neuveden: Springer, 2024, s. 47–55. ISBN 978-3-031-59467-0. Dostupné z: https://dx.doi.org/10.1007/978-3-031-59468-7_6.

DAUBNER, Lukáš, Sofija MAKSOVIĆ a Tomáš SEDLÁČEK. FREAS: Forensic-Ready Analysis Suite. 2024.

JEANSON, Francis, Spencer J GIBSON, Pinar ALPER, Alexander BERNIER, J Patrick WOOLLEY, Daniel MIETCHEN, Andrzej STRUG, Regina BECKER, Pim KAMERLING, Maria del Carmen Sanchez GONZALEZ, Nancy MAH, Ann NOVAKOWSKI, Mark D WILKINSON, Oussama Mohammed BENHAMED, Annalisa LANDI, Georg Philip KROG, Heimo MÜLLER, Umar RIAZ, Colin VEAL, Petr HOLUB, Esther VAN ENCKEVORT a Anthony J BROOKES. Getting your DUCs in a row - standardising the representation of Digital Use Conditions. SCIENTIFIC DATA. London: NATURE PORTFOLIO, 2024, roč. 11, č. 1, s. 1-10. ISSN 2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-024-03280-6.

SVOBODA, Tomáš, Adrián ROŠINEC a Ondřej FILIP. Hands-on experience with big data transfer via iRODS and Onedata. In e-INFRA CZ CONFERENCE 2024. 2024.

ŠPAČKOVÁ, Anna, Ondřej VÁVRA, Tomáš RAČEK, Václav BAZGIER, David SEHNAL, Jiří DAMBORSKÝ, Radka SVOBODOVÁ, David BEDNÁŘ a Karel BERKA. ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era. Nucleic Acids Research. Oxford University Press, 2024, roč. 52, D1, s. "D413"-"D418", 6 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkad1012.

KUESS, Lukas, Ernst PAUNZEN, Nikola FALTOVÁ, Daniel JADLOVSKÝ, Matúš LABAJ, Marko MESARČ, Prapti MONDAL, Michal PRIŠEGEN, Tahereh RAMEZANI, Johana SUPÍKOVÁ, Kateřina SVAČINKOVÁ, Michaela VÍTKOVÁ, Caiyun XIA, Klaus BERNHARD a Stefan HÜMMERICH. Chemically peculiar stars on the pre-main sequence. Astronomy & Astrophysics. EDP Sciences, 2024, 25 s. ISSN 0004-6361.

KACOVÁ, Radoslava, Zdenka DUDOVÁ, Tomáš HOUFEK, Radovan TOMÁŠIK a Roman HRSTKA. Integration, Cataloguing and FAIRification of Biobank and Clinical Data. In Europe Biobank Week Congress 2024. 2024.

ROŠINEC, Adrián. Introduction to the new generation EGI container execution platform. In EGI Webinar programme 2024. 2024. Dostupné z: https://dx.doi.org/10.5281/zenodo.10566759.

HOLUB, Petr. Leveraging BBMRI-ERIC for XAI Research in Digital Pathology. In 20th European Congress on Digital Pathology 2024 (ECDP2024). 2024.

SVOBODA, Tomáš. MAFILDB - technická realizace. In FAIR data pro uživatele CF MAFIL. 2024.

OHMANN, Christian, Maria PANAGIOTOPOULOU, Steve CANHAM, Petr HOLUB, Kurt MAJCEN, Gary SAUNDERS, Maddalena FRATELLI, Jing TANG, Philip GRIBBON, Reagon KARKI, Mari KLEEMOLA, Katja MOILANEN, Daan BROEDER, Walter DAELEMANS a Pieter FIVEZ. Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities. International Journal of Metadata, Semantics and Ontologies. Inderscience Publishers, 2024, roč. 16, č. 4, s. 261-277. ISSN 1744-2621.

ROŠINEC, Adrián a Tomáš SVOBODA. Research Data Management at CEITEC MU. In Open Science Workshop 2024. 2024.

DRAŠAR, Martin, Ádám RUMAN, Pavel ČELEDA a Yang SCHANCHIEH. The Road Towards Autonomous Cybersecurity Agents: Remedies for Simulation Environments. Online. In Sokratis Katsikas et al. ESORICS 2023: Computer Security. ESORICS 2023 International Workshops. Neuveden: Springer Nature Switzerland AG, 2024, s. 738-749. ISBN 978-3-031-54128-5. Dostupné z: https://dx.doi.org/10.1007/978-3-031-54129-2_43.

WITTNER, Rudolf, Petr HOLUB, Cecilia MASCIA, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Clare ALLOCCA, Fay BETSOU, Tony BURDETT, Ibon CANCIO, Adriane CHAPMAN, Martin CHAPMAN, Mélanie COURTOT, Vasa CURCIN, Johann EDER, Mark ELLIOT, Katrina EXTER, Carole GOBLE, Martin GOLEBIEWSKI, Bron KISLER, Andreas KREMER, Simone LEO, Sheng LIN-GIBSON, Anna MARSANO, Marco MATTAVELLI, Josh MOORE, Hiroki NAKAE, Isabelle PERSEIL, Ayat SALMAN, James SLUKA, Stian SOILAND-REYES, Caterina STRAMBIO-DE-CASTILLIA, Michael SUSSMAN, Jason R SWEDLOW, Kurt ZATLOUKAL a Jörg GEIGER. Toward a common standard for data and specimen provenance in life sciences. LEARNING HEALTH SYSTEMS. UNITED STATES: WILEY, 2024, roč. 8, č. 1, s. 1-9. ISSN 2379-6146. Dostupné z: https://dx.doi.org/10.1002/lrh2.10365.

DAUBNER, Lukáš, Raimundas MATULEVICIUS, Barbora BÜHNOVÁ, Matej ANTOL, Michal RŮŽIČKA a Tomáš PITNER. A Case Study on the Impact of Forensic-Ready Information Systems on the Security Posture. Online. In Advanced Information Systems Engineering. Cham: Springer Nature Switzerland, 2023, s. 522-538. ISBN 978-3-031-34559-3. Dostupné z: https://dx.doi.org/10.1007/978-3-031-34560-9_31.

DAUBNER, Lukáš, Matulevičius RAIMUNDAS a Barbora BÜHNOVÁ. A Model of Qualitative Factors in Forensic-Ready Software Systems. Online. In Research Challenges in Information Science: Information Science and the Connected World. Cham: Springer Nature Switzerland, 2023, s. 308-324. ISBN 978-3-031-33079-7. Dostupné z: https://dx.doi.org/10.1007/978-3-031-33080-3_19.

CALATRAVA, Amanda, Hernán ASOREY, Jan ASTALOS, Alberto AZEVEDO, Francesco BENINCASA, Ignacio BLANQUER, Martin BOBAK, Francisco BRASILEIRO, Laia CODÓ, Laura del CANO, Borja ESTEBAN, Meritxell FERRET, Josef HANDL, Tobias KERZENMACHER, Valentin KOZLOV, Aleš KŘENEK, Ricardo MARTINS, Manuel PAVESIO, Antonio Juan RUBIO-MONTERO a Juan SÁNCHEZ-FERRERO. A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. COMPUTER SCIENCE REVIEW. NETHERLANDS: ELSEVIER, 2023, roč. 49. ISSN 1574-0137. Dostupné z: https://dx.doi.org/10.1016/j.cosrev.2023.100571.

JURÁČEK, Jaroslav, Marie BOUDNÁ, Michal STANÍK, Michaela RUČKOVÁ, Karolína TRACHTOVÁ, Hana MALČÍKOVÁ, Eva LŽIČAŘOVÁ, Dominik A BARTH, Martin PICHLER a Ondřej SLABÝ. A tissue miRNA expression pattern is associated with disease aggressiveness of localized prostate cancer. Prostate. HOBOKEN: WILEY, 2023, roč. 83, č. 4, s. 340-351. ISSN 0270-4137. Dostupné z: https://dx.doi.org/10.1002/pros.24466.

DAUBNER, Lukáš, Martin MACÁK, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ, Sofija MAKSOVIĆ a Tomáš PITNER. Addressing insider attacks via forensic-ready risk management. JOURNAL OF INFORMATION SECURITY AND APPLICATIONS. ENGLAND: ELSEVIER, 2023, roč. 73, March 2023, s. 103433-103449. ISSN 2214-2126. Dostupné z: https://dx.doi.org/10.1016/j.jisa.2023.103433.

HOLZINGER, Andreas, Katharina KEIBLINGER, Petr HOLUB, Kurt ZATLOUKAL a Heimo MÜLLER. AI for Life: Trends in Artificial Intelligence for Biotechnology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 74, č. 1, s. 16-24. ISSN 1871-6784. Dostupné z: https://dx.doi.org/10.1016/j.nbt.2023.02.001.

LAMOTHE, Lucie, Jennifer R B JENSEN, Hans IENASESCU, Ove J R GUSTAFSSON, Alban GAIGNARD, Dmitry REPCHEVSKY, Radka SVOBODOVÁ, Tomáš RAČEK, Adrián ROŠINEC, Matej ANTOL a Hervé MÉNAGER. An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems. BioHackrXiv. 2023, s. 1-10. Dostupné z: https://dx.doi.org/10.37044/osf.io/79kje.

VOREL, Jiří, Nikol KMENTOVÁ, Christoph HAHN, Petr BUREŠ a Martin KAŠNÝ. An insight into the functional genomics and species classification of Eudiplozoon nipponicum (Monogenea, Diplozoidae), a haematophagous parasite of the common carp Cyprinus carpio. BMC Genomics. BioMed Central Ltd, 2023, roč. 24, č. 1, s. 1-20. ISSN 1471-2164. Dostupné z: https://dx.doi.org/10.1186/s12864-023-09461-8.

DAVID, Romain, Arina RYBINA, Jean-Marie BUREL, Jean-Karim HERICHE, Pauline AUDERGON, Jan-Willem BOITEN, Frederik COPPENS, Sara CROCKETT, Exter KATRINA, Sven FAHRENER, Maddalena FRATELLI, Carole GOBLE, Philipp GORMANNS, Tobias GRANTNER, Bjorn GRUNING, Kim Tamara GURWITZ, John HANCOCK, Henriette HARMSE, Petr HOLUB, Nick JUTY, Geoffrey KARNBACH, Emma KAROUNE, Antje KEPPLER, Jessica KLEMEIER, Carla LANCELOTTI, Jean-Luc LEGRAS, L Allyson LISTER, Livio Longo DARIO, Rebecca LUDWIG, Benedicte MADON, Marzia MASSIMI, Vera MATSER, Rafaele MATTEONI, Michaela Th MAYRHOFER, Ohmann CHRISTIAN, Maria PANAGIOTOPOULOU, Helen PARKINSON, Isabelle PERSEIL, Claudia PFANDER, Roland PIERUSCHKA, Michael RAESS, Andreas RAUBER, Audrey S RICHARD, Paolo ROMANO, Antonio ROSATO, Alex SANCHEZ-PLA, Susanna-Assunta SANSONE, Ugis SARKANS, Beatriz SERRANO-SOLANO, Jing TANG, Ziaurrehman TANOLI, Jonathan TEDDS, Harald WAGENER, Martin WEISE, Hans V WESTERHOFF, Rudolf WITTNER, Jonathan EWBANK, Niklas BLOMBERG a Philip GRIBBON. "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons. EMBO Journal. 2023. ISSN 1460-2075.

ROŠINEC, Adrián a Klára MORAVCOVÁ. Beskar Cloud: OpenStack Deployment on Top of Kubernetes. In 12th Iberian Grid Conference. 2023.

MÜLLER, Heimo, Catarina LOPES-DIAS, Petr HOLUB, Markus PLASS, Emilian JUNGWIRTH, Robert REIHS, Paul R TORKE, Apostolos MALATRAS, Anouk BERGER, Heather COOMBS, Joakim DILLNER a Roxana MERINO-MARTINEZ. BIBBOX, a FAIR toolbox and App Store for Life Science Research. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 77, s. 12-19. ISSN 1871-6784. Dostupné z: https://dx.doi.org/10.1016/j.nbt.2023.06.001.

ŠREIBR, Sara, Jana ILGOVÁ, Pavel DOBEŠ, Jiří VOREL, Jacek MARCINIAK, Jana HURYCHOVÁ, Martin KAŠNÝ a Pavel HYRŠL. Bioactive molecules released by Heterorhabditis bacteriophora in response to various activation materials. In Virtual Nematology Conference 2023. 2023.

ZAVADIL, Jan, Tomáš ROHAN, Jaroslav JURÁČEK, Igor KISS, Lenka OSTŘÍŽKOVÁ, Vlastimil VÁLEK, Ondřej SLABÝ a Tomáš ANDRAŠINA. Biomarkery jako prognostické a prediktivní faktory u pacientů s hepatocelulárním karcinomem podstupujících radiologické onkologické intervence. Klinická onkologie. Praha: Česká lékařská společnost J. E. Purkyně, 2023, roč. 36, č. 2, s. 104-111. ISSN 0862-495X. Dostupné z: https://dx.doi.org/10.48095/ccko2023104.

DAUBNER, Lukáš, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ a Tomáš PITNER. BPMN4FRSS: An BPMN Extension to Support Risk-Based Development of Forensic-Ready Software Systems. Online. In Evaluation of Novel Approaches to Software Engineering. Cham: Springer Nature Switzerland, 2023, s. 20-43. ISBN 978-3-031-36596-6. Dostupné z: https://dx.doi.org/10.1007/978-3-031-36597-3_2.

ROŠINEC, Adrián a Klára MORAVCOVÁ. Building OpenStack Cloud with Kubernetes as Undercloud. In EGI Conference 2023. 2023.

CAPANDOVÁ, Michaela. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science. In Annual Meeting, Pavlov, 24.5.-26.5.2023. 2023.

CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Dáša BOHAČIAKOVÁ, Hana KOTASOVÁ, Vendula PELKOVÁ, Zbyněk VORÁČ, Matej ANTOL a Aleš HAMPL. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science. In The Annual PhD Conference in Biomedical Sciences. 2023.

VÁŇOVÁ, Tereza, Jiří SEDMÍK, Jan RAŠKA, Kateřina AMRUZ ČERNÁ, Petr TAUŠ, Veronika POSPÍŠILOVÁ, Markéta NEZVEDOVÁ, Veronika FEDOROVÁ, Soňa KADÁKOVÁ, Hana KLÍMOVÁ, Michaela CAPANDOVÁ, Petra ORVISKÁ, Petr FOJTÍK, Simona BÁRTOVÁ, Karla PLEVOVÁ, Zdeněk SPÁČIL, Hana HŘÍBKOVÁ a Dáša BOHAČIAKOVÁ. Cerebral organoids derived from patients with Alzheimer´s disease with PSEN1/2 mutations have defective tissue patterning and altered development. CELL REPORTS. CAMBRIDGE: CELL PRESS, 2023, roč. 42, č. 11, s. 1-27. ISSN 2211-1247. Dostupné z: https://dx.doi.org/10.1016/j.celrep.2023.113310.

SVOBODA, Tomáš, Aleš KŘENEK, Łukasz OPIOŁA, Andrea MANZI a Josef HANDL. Cloudification of scientific experimental data using Onedata. In EGI Conference 2023. 2023.

JURÁČEK, Jaroslav, Marie MĄDRZYK, Karolína TRACHTOVÁ, Michaela RUČKOVÁ, Júlia BOHOŠOVÁ, Dominik A. BARTH, Martin PICHLER, Michal STANÍK a Ondřej SLABÝ. Combination of Urinary MiR-501 and MiR-335 With Current Clinical Diagnostic Parameters as Potential Predictive Factors of Prostate Biopsy Outcome. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2023, roč. 20, č. 3, s. 308-316. ISSN 1109-6535. Dostupné z: https://dx.doi.org/10.21873/cgp.20383.

MACÁK, Martin, Tomáš REBOK, Matúš ŠTOVČIK, Mouzhi GE, Bruno ROSSI a Barbora BÜHNOVÁ. CopAS: A Big Data Forensic Analytics System. Online. In Proceedings of the 8th International Conference on Internet of Things, Big Data and Security IoTBDS - Volume 1. Setubal, Portugal: SciTePress, 2023, s. 150-161. ISBN 978-989-758-643-9. Dostupné z: https://dx.doi.org/10.5220/0011929000003482.

REBOK, Tomáš a Ondřej MACHALA. CoPAS: the Modular Data Analytics Tool. 2023.

POLČÁK, Radim, Jakub MÍŠEK, Matěj MYŠKA, Jakub HARAŠTA, Pavel LOUTOCKÝ, Bettina BACHER, Václav STUPKA, Michal KOŠČÍK, David ŠMAHEL, Monika METYKOVÁ, Herbert HRACHOVEC, Andreas KIRCHNER, Alena MACKOVÁ, Jakub MACEK, Dan Jerker Börje SVANTESSON, Erich SCHWEIGHOFER, Hana MACHÁČKOVÁ, Zbyněk LOEBL, Andreas WIEBE, Tamás SZÁDECZKY, Jan HOSPES, Nikolaus FORGÓ, Michal ČERNÝ, Jiří MAREK a Alex IVANČO. Cyberspace 2023. 2023.

DAUBNER, Lukáš a Adam POVAŽANEC. Data Loss Prevention Solution for Linux Endpoint Devices. Online. In ARES '23: Proceedings of the 18th International Conference on Availability, Reliability and Security. United States: Association for Computing Machinery, 2023, s. 1-10. ISBN 979-8-4007-0772-8. Dostupné z: https://dx.doi.org/10.1145/3600160.3605036.

BULLA, Lukas, Kristian HJORTH, Oskar KOHOUT, Jan LANG, Sebastian ECKER, Sebastian NEUMANN, Julius BITTERMANN, Robert KINDLER, Marcus HUBER, Martin BOHMANN, Rupert URSIN a Matej PIVOLUSKA. Distribution of genuine high-dimensional entanglement over 10.2 km of noisy metropolitan atmosphere. PHYSICAL REVIEW A. UNITED STATES: AMER PHYSICAL SOC, 2023, roč. 107, L050402, s. 1-5. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.107.L050402.

HEJTMÁNEK, Lukáš, Adrián ROŠINEC a Sebastian LUNA-VALERO. Easy Deployment of Dask and Jupyter Notebooks on Managed Kubernetes. In EGI Conference 2023. 2023.

ROŠINEC, Adrián, Tomáš SVOBODA, Tomáš RAČEK, Aleš KŘENEK a Radka SVOBODOVÁ. Enhancing Data Accessibility: Strategies and Tools for Effective Metadata Management. In IBERGRID 2023. 2023.

HERREROS, David, Roy R. LEDERMAN, James M. KRIEGER, Amaya JIMÉNEZ-MORENO, Marta MARTÍNEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Carlos O. S. SORZANO a José M. CARAZO. Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials. Nature Communications. 2023, roč. 14, č. 1, s. 1-10. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-023-35791-y.

DAUBNER, Lukáš, Barbora BÜHNOVÁ a Tomáš PITNER. Forensic experts' view of forensic-ready software systems: A qualitative study. Journal of Software: Evolution and Process. John Wiley & Sons Ltd., 2023, Neuveden, e2598, s. 1-23. ISSN 2047-7481. Dostupné z: https://dx.doi.org/10.1002/smr.2598.

KREJČÍŘ, Vlastimil, Alžbeta STRAKOŠOVÁ a Jan ADLER. From DSpace to Islandora: Why and How. code{4}lib journal. code{4}lib, 2023, č. 57. ISSN 1940-5758.

ČERMÁK, Milan a Petr VELAN. How can network traffic lie? DFRWS EU 2023, 2023.

ŠPAČKOVÁ, Anna, Ondřej VÁVRA, Tomáš RAČEK, Václav BAZGIER, David SEHNAL, Jiří DAMBORSKÝ, Radka SVOBODOVÁ a Karel BERKA. ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era. In 3D-BioInfo | ICSB 3D-SIG | ELIXIR Czech Republic Community Meeting in Structural Bioinformatics. 2023.

SCHINDLER, Ondřej, Karel BERKA, Alessio CANTARA, Aleš KŘENEK, Dominik TICHÝ, Tomáš RAČEK a Radka SVOBODOVÁ. αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Research. Oxford: Oxford University Press, 2023, roč. 51, W1, s. "W11"-"W16", 6 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkad349.

SVOBODA, Tomáš, Radka SVOBODOVÁ, David ANTOŠ, Adrián ROŠINEC a Aleš KŘENEK. Introduction to Onedata at CEITEC MU and in Czech National Repository Platform. In MATECHat meeting. 2023.

PETROVIČ, Filip a Jiří FILIPOVIČ. Kernel Tuning Toolkit. SoftwareX. Elsevier, 2023, roč. 22, neuveden, s. 1-6. ISSN 2352-7110. Dostupné z: https://dx.doi.org/10.1016/j.softx.2023.101385.

RAČEK, Tomáš, Tomáš SVOBODA a Radka SVOBODOVÁ. Management of life-science data and their metadata. In XXII. setkání biochemiků a molekulárních biologů. 2023.

KUREČKA, Martin. Monte Carlo Tree Search with Function Approximation for Risk-constrained Planning and Reinforcement Learning. In The IJCAI-23 Joint Workshop on Artificial Intelligence Safety and Safe Reinforcement Learning. 2023.

SVOBODOVÁ, Radka, Karel BERKA, Ivana HUTAŘOVÁ VAŘEKOVÁ, Tomáš RAČEK a Ondřej SCHINDLER. New ways of protein family visualization in AlphaFold era. In 3D-BioInfo | ICSB 3D-SIG | ELIXIR Czech Republic Community Meeting in Structural Bioinformatics. 2023.

SPIŠAKOVÁ, Viktória, Lukáš HEJTMÁNEK a Jakub HYNŠT. Nextflow in Bioinformatics: Executors Performance Comparison Using Genomics Data. FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE. NETHERLANDS: ELSEVIER, 2023, roč. 142, May 2023, s. 328-339. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2023.01.009.

BULLA, Lukas, Matej PIVOLUSKA, Kristian HJORTH, Oskar KOHOUT, Jan LANG, Sebastian ECKER, Sebastian P NEUMANN, Julius BITTERMANN, Robert KINDLER, Marcus HUBER, Martin BOHMANN a Rupert URSIN. Nonlocal Temporal Interferometry for Highly Resilient Free-Space Quantum Communication. Physical Review X. College Park: American Physical Society, 2023, roč. 13, č. 2, s. 1-12. ISSN 2160-3308. Dostupné z: https://dx.doi.org/10.1103/PhysRevX.13.021001.

ROŠINEC, Adrián, Tomáš SVOBODA, Tomáš RAČEK, Josef HANDL, Jozef SABO, Aleš KŘENEK a Radka SVOBODOVÁ. Onedata4Sci: Life-science experimental datasets management system. In 3D-BioInfo | ISCB 3D-SIG | ELIXIR Czech Republic Structural Bioinformatics. 2023.

DRAŠAR, Martin. Perception of the Environment. Online. In Kott, Alexander. Autonomous Intelligent Cyber Defense Agent (AICA): A Comprehensive Guide. 1. vyd. Cham: Springer International Publishing, 2023, s. 47-61. Advances in Information Security, 87. ISBN 978-3-031-29269-9. Dostupné z: https://dx.doi.org/10.1007/978-3-031-29269-9_3.

HOLUB, Petr, Heimo MÜLLER, Tomáš BÍL, Luca PIREDDU, Markus PLASS, Fabian PRASSER, Irene SCHLÜNDER, Kurt ZATLOUKAL, Rudolf NENUTIL a Tomáš BRÁZDIL. Privacy risks of whole-slide image sharing in digital pathology. Nature Communications. 2023, roč. 14, č. 2577, s. 1-15. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-023-37991-y.

PLASS, Markus, Rudolf WITTNER, Petr HOLUB, Francesca FREXIA, Cecilia MASCIA, Matej GALLO, Heimo MÜLLER a Jörg GEIGER. Provenance of specimen and data – A prerequisite for AI development in computational pathology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 78, DEC, s. 22-28. ISSN 1871-6784. Dostupné z: https://dx.doi.org/10.1016/j.nbt.2023.09.006.

ANTOL, Matej, Michal RŮŽIČKA, Luděk MATYSKA a Jiří MAREK. Public (Health) Sector and Academia. In Martin Komenda. Data-Driven Decision-Making in Medical Education and Healthcare. First edition. Brno: Masaryk University, 2023, s. 51-66. Data Rulezzzz! ISBN 978-80-280-0392-0.

VÁVRA, Ondřej, Jakub BERANEK, Jan ŠTOURAČ, Martin SURKOVSKY, Jiří FILIPOVIČ, Jiří DAMBORSKÝ, Jan MARTINOVIC a David BEDNÁŘ. pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinformatics. Oxford: Oxford University Press, 2023, roč. 39, č. 8, s. 1-3. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btad443.

ARAUJO, Mateus, Marcus HUBER, Miguel NAVASCUES, Matej PIVOLUSKA a Armin TAVAKOLI. Quantum key distribution rates from semidefinite programming. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2023, roč. 7, č. 1, s. 1-18. ISSN 2521-327X. Dostupné z: https://dx.doi.org/10.22331/Q-2023-05-24-1019.

SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA, Vlastislav DOHNAL, Susana LADRA a Miguel A. MARTÍNEZ-PRIETO. Reproducible experiments with Learned Metric Index Framework. Information systems. Elsevier, 2023, roč. 118, č. 1, s. 102255-102270. ISSN 0306-4379. Dostupné z: https://dx.doi.org/10.1016/j.is.2023.102255.

SLABÝ, Ondřej, Jaroslav JURÁČEK a Michal STANÍK. Sada pro odlišení indolentního a agresivního karcinomu prostaty. 2023.

GALLO, Matej, Vojtěch KRAJŇANSKÝ, Rudolf NENUTIL, Petr HOLUB a Tomáš BRÁZDIL. Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 78, December, s. 52-67. ISSN 1871-6784. Dostupné z: https://dx.doi.org/10.1016/j.nbt.2023.09.008.

SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Matej ANTOL, Jaroslav OĽHA a Vlastislav DOHNAL. SISAP 2023 Indexing Challenge – Learned Metric Index. In Pedreira, O., Estivill-Castro, V. Similarity Search and Applications. SISAP 2023. Lecture Notes in Computer Science, vol 14289. Cham: Springer, 2023, s. 282-290. ISBN 978-3-031-46993-0. Dostupné z: https://dx.doi.org/10.1007/978-3-031-46994-7_24.

KLAŠKA, David, Antonín KUČERA, Martin KUREČKA, Vít MUSIL, Petr NOVOTNÝ a Vojtěch ŘEHÁK. Synthesizing Resilient Strategies for Infinite-Horizon Objectives in Multi-Agent Systems. Online. In Edith Elkind. Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, IJCAI 2023,. Neuveden: International Joint Conferences on Artificial Intelligence, 2023, s. 171-179. ISBN 978-1-956792-03-4. Dostupné z: https://dx.doi.org/10.24963/ijcai.2023/20.

MESSINA, Nicola, Jan SEDMIDUBSKÝ, Falchi FABRIZIO a Tomáš REBOK. Text-to-Motion Retrieval: Towards Joint Understanding of Human Motion Data and Natural Language. Online. In 46th International Conference on Research and Development in Information Retrieval (SIGIR). New York, NY, USA: Association for Computing Machinery, 2023, s. 2420-2425. ISBN 978-1-4503-9408-6. Dostupné z: https://dx.doi.org/10.1145/3539618.3592069.

TØRRING, Jacob O, van Werkhoven BEN, Filip PETROVIČ, Floris-Jan WILLEMSEN, Jiří FILIPOVIČ a Anne C ELSTER. Towards a Benchmarking Suite for Kernel Tuners. Online. In 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). neuveden: IEEE, 2023, s. 724-733. ISBN 979-8-3503-1199-0. Dostupné z: https://dx.doi.org/10.1109/IPDPSW59300.2023.00124.

RUSŇÁK, Vít a Martin DRAŠAR. Towards a Visual Analytics Workflow for Cybersecurity Simulations. Online. In Christophe Hurter, Helen Purchase, Kadi Bouatouch. Proceedings of VISIGRAPP2023 - Volume3: IVAPP. To appear. Lisbon, Portugal: SCITEPRESS – Science and Technology Publications, Lda., 2023, s. 179-186. ISBN 978-989-758-634-7. Dostupné z: https://dx.doi.org/10.5220/0011695000003417.

DAVID, Romain, Audrey RICHARD, Claire CONNELLAN, Katharina LAUER, Maria Luisa CHIUSANO, Carole GOBLE, Martin HOUDE, Isabel KEMMER, Antje KEPPLER, Philippe LIEUTAUD, Christian OHMANN, Maria PANAGIOTOPOULOU, Sara Raza KHAN, Arina RYBINA, Stian SOILAND-REYES, Charlotte WIT, Rudolf WITTNER, Rafael Andrade BUONO, Sarah Arnaud MARSH, Pauline AUDERGON, Dylan BONFILS, Carazo JOSE-MARIA, Remi CHARREL, Frederik COPPENS, Wolfgang FECKE, Claudia FILIPPONE, Eva Garcia ALVAREZ, Sheraz GUL, Henning HERMJAKOB, Katja HERZOG, Petr HOLUB, Lukasz KOZERA, Allyson LISTER, José LÓPEZ-CORONADO, Bénédicte MADON, Kurt MAJCEN, William MARTIN, Wolfgang MÜLLER, Elli PAPADOPOULOU, Christine M.A. PRAT, Paolo ROMANO, Sansone SUSANNA-ASSUNTA, Gary SAUNDERS, Niklas BLOMBERG a Jonathan EWBANK. Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Science Journal. Ubiquity Press, 2023. ISSN 1683-1470. Dostupné z: https://dx.doi.org/10.5334/dsj-2023-035.

STŘELÁK, David, David MYŠKA, Filip PETROVIČ, Jan POLÁK, Jaroslav OĽHA a Jiří FILIPOVIČ. Umpalumpa: a framework for efficient execution of complex image processing workloads on heterogeneous nodes. Computing. Springer, 2023, roč. 105, č. 11, s. 2389-2417. ISSN 0010-485X. Dostupné z: https://dx.doi.org/10.1007/s00607-023-01190-w.

SPIŠAKOVÁ, Viktória, Dalibor KLUSÁČEK a Lukáš HEJTMÁNEK. Using Kubernetes in Academic Environment : Problems and Approaches. In Dalibor Klusáček, Julita Corbalán, Gonzalo P. Rodrigo. Job Scheduling Strategies for Parallel Processing. 1. vyd. Cham (Switzerland): Springer, 2023, s. 235-253. ISBN 978-3-031-22697-7. Dostupné z: https://dx.doi.org/10.1007/978-3-031-22698-4_12.

ČERMÁK, Milan, Tatiana FRITZOVÁ, Vít RUSŇÁK a Denisa ŠRÁMKOVÁ. Using relational graphs for exploratory analysis of network traffic data. Forensic Science International: Digital Investigation. 2023, roč. 45, S, s. 1-10. ISSN 2666-2825. Dostupné z: https://dx.doi.org/10.1016/j.fsidi.2023.301563.

HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA a Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, roč. 42, č. 3, s. 63-73. ISSN 0167-7055. Dostupné z: https://dx.doi.org/10.1111/cgf.14812.

HERREROS, David, Jakub KISKA, Erney RAMÍREZ-APORTELA, Jiří FILIPOVIČ, José María CARAZO a Carlos Oscar SORZANO. ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis. Journal of Molecular Biology. Elsevier, 2023, roč. 435, č. 9, s. 1-14. ISSN 0022-2836. Dostupné z: https://dx.doi.org/10.1016/j.jmb.2023.168088.

RAČEK, Tomáš. Zpracování dat na CEITECu. In SitSem - Seminář laboratoře Sitola. 2023.

SCHINDLER, Ondřej, Tomáš RAČEK a Radka SVOBODOVÁ. Alphacharges - a web service for calculating QM-like partial atomic charges for AlphaFold proteins. In XXI. setkání biochemiků a molekulárních biologů. 2022.

PITNER, Tomáš, Otto DOSTÁL, Michal JAVORNÍK, Pavel ANDRES, Aleš ROČEK, Karel SLAVÍČEK, Tomáš KUBALA a Otto DOSTÁL. Analýza systému pro podporu efektivní spolupráce distribuovaných zdravotnických týmů. Brno: MU, 2022, 76 s.

RAČEK, Tomáš, Ondřej SCHINDLER, Lenka PTÁČNÍKOVÁ a Radka SVOBODOVÁ. Atomic Charge Calculator II – a web service for calculating partial atomic charges. In ENBIK2022. 2022. ISBN 978-80-7592-127-7.

BRÁZDIL, Tomáš, Matej GALLO, Rudolf NENUTIL, Andrej KUBANDA, Martin TOUFAR a Petr HOLUB. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining. The Journal of Pathology: Clinical Research. 2022, roč. 8, č. 2, s. 129-142. ISSN 2056-4538. Dostupné z: https://dx.doi.org/10.1002/cjp2.249.

SVOBODA, Tomáš, Aleš KŘENEK a Josef HANDL. Automatic storing, sharing and archiving datasets with Onedata. In EGI Conference 2022. 2022.

SVOBODA, Tomáš, Aleš KŘENEK a Josef HANDL. Automating scientific dataset management and processing using Onedata. In IBERGRID 2022. 2022.

MIHÁLIKOVÁ, Ivana, Martin FRIÁK, Matej PIVOLUSKA, Martin PLESCH, Martin SAIP a Mojmír ŠOB. Best-Practice Aspects of Quantum-Computer Calculations: A Case Study of the Hydrogen Molecule. MOLECULES. SWITZERLAND: MDPI, 2022, roč. 27, č. 3, s. 1-15. ISSN 1420-3049. Dostupné z: https://dx.doi.org/10.3390/molecules27030597.

SPIWOK, Vojtěch, Martin KUREČKA a Aleš KŘENEK. Collective Variable for Metadynamics Derived From AlphaFold Output. FRONTIERS IN MOLECULAR BIOSCIENCES. SWITZERLAND: FRONTIERS MEDIA SA, 2022, roč. 2022, č. 9, s. 1-10. ISSN 2296-889X. Dostupné z: https://dx.doi.org/10.3389/fmolb.2022.878133.

HUSÁK, Martin, Lukáš SADLEK, Stanislav ŠPAČEK, Martin LAŠTOVIČKA, Michal JAVORNÍK a Jana KOMÁRKOVÁ. CRUSOE: A Toolset for Cyber Situational Awareness and Decision Support in Incident Handling. Computers & Security. Elsevier, 2022, roč. 115, April, s. 1-19. ISSN 0167-4048. Dostupné z: https://dx.doi.org/10.1016/j.cose.2022.102609.

RUMAN, Ádám a Daniel KOUŘIL. Detection of Malicious Code in SSH programs. In Sborník příspěvků z 54. konference EurOpen.CZ. 2022, s. 115-124.

SCHWARZ, Josef a Vlastimil KREJČÍŘ. Digitalia MUNI ARTS – více než digitální knihovna : výzkumná infrastruktura Filozofické fakulty Masarykovy univerzity a systém Islandora. In Archivy, knihovny, muzea v digitálním světě 2022. 2022.

APPEL, Paul, Alexander J. HEILMAN, Ezekiel W. WERTZ, David W. LYONS, Marcus HUBER, Matej PIVOLUSKA a Giuseppe VITAGLIANO. Finite-Function-Encoding Quantum States. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2022, roč. 6, č. 708, s. 1-34. ISSN 2521-327X. Dostupné z: https://dx.doi.org/10.22331/q-2022-05-09-708.

KREJČÍŘ, Vlastimil. From DSpace to Islandora : why and how. In Innovative Library in Digital Era (ILIDE) 2022. 2022.

PIVOLUSKA, Matej a Martin PLESCH. Implementation of quantum compression on IBM quantum computers. Nature Scientific Reports. USA: NATURE PUBLISHING GROUP, 2022, roč. 12, č. 1, s. 5841-5849. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/s41598-022-09881-8.

NĚMCOVÁ, Petra, Jana HOZZOVÁ a Jiří FILIPOVIČ. Improving ligand transport trajectory within flexible receptor in CaverDock. Online. In SAC '22: Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing. USA: Association for Computing Machinery, 2022, s. 619-626. ISBN 978-1-4503-8713-2. Dostupné z: https://dx.doi.org/10.1145/3477314.3506988.

OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL a Vlastislav DOHNAL. Learned Indexing in Proteins: Extended Work on Substituting Complex Distance Calculations with Embedding and Clustering Techniques. arXiv, 2022. Dostupné z: https://dx.doi.org/10.48550/ARXIV.2208.08910.

OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL a Vlastislav DOHNAL. Learned Indexing in Proteins: Substituting Complex Distance Calculations with Embedding and Clustering Techniques. In Tomáš Skopal, Fabrizio Falchi, Jakub Lokoč, Maria Luisa Sapino, Ilaria Bartolini, Marco Patella. Similarity Search and Applications, 15th International Conference, SISAP 2022, Bologna, Italy, October 5–7, 2022, Proceedings. 1. vyd. Cham: Springer Cham, 2022, s. 274-282. ISBN 978-3-031-17848-1. Dostupné z: https://dx.doi.org/10.1007/978-3-031-17849-8_22.

WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Jörg GEIGER a Petr HOLUB. Lightweight Distributed Provenance Model for Complex Real–world Environments. Scientific Data. Berlin: Nature Research, 2022, roč. 2022, č. 9, s. 1-19. ISSN 2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-022-01537-6.

KUREČKA, Martin. Lower bound on the size of a quasirandom forcing set of permutations. COMBINATORICS PROBABILITY & COMPUTING. 2022, roč. 31, č. 2, s. 304-319. ISSN 0963-5483. Dostupné z: https://dx.doi.org/10.1017/S0963548321000298.

SPIŠAKOVÁ, Viktória, Adrián ROŠINEC, Lukáš HEJTMÁNEK a Matej ANTOL. Managed Kubernetes — Next Gen Academic Infrastructure? In EGI Conference 2022. 2022.

JAVORNÍK, Michal a Martin HUSÁK. Mission-centric Decision Support in Cybersecurity via Bayesian Privilege Attack Graph. Engineering Reports. John Wiley & Sons, Inc, 2022, roč. 4, č. 12, s. "e12538", 25 s. ISSN 2577-8196. Dostupné z: https://dx.doi.org/10.1002/eng2.12538.

SORZANO, Carlos, Amaya JIMÉNEZ-MORENO, David MALUENDA, Marta MARTÍNEZ, Erney RAMÍREZ-APORTELA, James KRIEGER, Roberto MELERO, Ana CUERVO, Javier CONESA, Jiří FILIPOVIČ, Pablo CONESA, Laura del CAÑO, Yunior FONSECA, Jorge Jiménez-de LA MORENA, Patricia LOSANA, Ruben SÁNCHEZ-GARCÍA, David STŘELÁK, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, David HERREROS, Jose Luis VILAS, Roberto MARABINI a Jose Maria CARAZO. On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy. Acta Crystallographica Section D: Structural Biology. Chester: International Union of Crystallography, 2022, roč. 78, č. 4, s. 410-423. ISSN 2059-7983. Dostupné z: https://dx.doi.org/10.1107/S2059798322001978.

PORTEŠOVÁ, Šárka, Eva NOVÁKOVÁ, Růžena BLAŽKOVÁ, Michal JABŮREK, Ondřej STRAKA, Michal RŮŽIČKA, Matěj SMETANA, Jaroslav TOČÍK, Jana UNČOVSKÁ, Kateřina KREPSOVÁ, Ondřej DVOŘÁK, Ondřej VORÁČ, Jan KOTTMAN, Zdeněk NOVÁK, Petra BUŠKOVÁ, Jindřiška SVOBODOVÁ, Eva MALACHOVÁ a Tereza HRSTKOVÁ. Podporujeme nadané prvňáčky. 2022.

GOVARTS, Eva, Liese GILLES, Stephanie BOPP, Petr HOLUB, Leslie MATALONGA, Roel VERMEULEN, Martine VRIJHEID, Sergi BELTRAN, Mette HARTLEV, Sarah JONES, Laura Rodriguez MARTIN, Arnout STANDAERT, Morris A SWERTZ, Jan THEUNIS, Xenia TRIER, Nina VOGEL, Koert VAN ESPEN, Sylvie REMY a Greet SCHOETERS. Position paper on management of personal data in environment and health research in Europe. Environment International. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2022, roč. 165. ISSN 0160-4120. Dostupné z: https://dx.doi.org/10.1016/j.envint.2022.107334.

SCHINDLER, Ondřej, Tomáš RAČEK a Radka SVOBODOVÁ. Prediction of QM-like partial atomic charges for alphafold. In XXII. Workshop of biophysical chemists and electrochemists. 2022. ISBN 978-80-280-0087-5.

TRAPL, Dalibor, MArtin KRUPIČKA, Vladimír VIŠŇOVSKÝ, Jana HOZZOVÁ, Jaroslav OĽHA, Aleš KŘENEK a Vojtěch SPIWOK. Property Map Collective Variable as a Useful Tool for a Force Field Correction. Journal of Chemical Information and Modeling. American Chemical Society, 2022, roč. 62, č. 3, s. 567-576. ISSN 1549-9596. Dostupné z: https://dx.doi.org/10.1021/acs.jcim.1c00651.

SCHINDLER, Ondřej, Tomáš RAČEK, Kamil JELÍNEK a Radka SVOBODOVÁ. QM-like partial atomic charges for AlphaFold available online. In ENBIK2022. 2022. ISBN 978-80-7592-127-7.

PARDY, Filip, Jakub HYNŠT, Dana FIALOVÁ, Kristýna BRZOBOHATÁ, Lukáš HEJTMÁNEK a Šárka POSPÍŠILOVÁ. Reconstructing of the genome of Gregor Johann Mendel using state-of-the-art molecular and bioinformatics tools. In Mendel Genetics Conference 2022. 2022.

RAI, Ashutosh, Matej PIVOLUSKA, Souradeep SASMAL, Manik BANIK, Sibasish GHOSH a Martin PLESCH. Self-testing quantum states via nonmaximal violation in Hardy's test of nonlocality. PHYSICAL REVIEW A. UNITED STATES: AMER PHYSICAL SOC, 2022, roč. 105, č. 5, s. 1-8. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.105.052227.

FREXIA, Francesca, Cecilia MASCIA, Rudolf WITTNER, Markus PLASS, Heimo MÜLLER, Jörg GEIGER a Petr HOLUB. The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes. In Challenges of Trustable AI and Added-Value on Health. 2022. Dostupné z: https://dx.doi.org/10.3233/SHTI220489.

MIHÁLIKOVÁ, Ivana, Matej PIVOLUSKA, Martin PLESCH, Martin FRIÁK, Daniel NAGAJ a Mojmír ŠOB. The Cost of Improving the Precision of the Variational Quantum Eigensolver for Quantum Chemistry. Nanomaterials. London: MDPI, 2022, roč. 12, č. 2, s. 1-22. ISSN 2079-4991. Dostupné z: https://dx.doi.org/10.3390/nano12020243.

DUDOVÁ, Zdenka, Nathalie CONTE, Jeremy MASON, Dalibor STUCHLÍK, Radim PEŠA, Csaba HALMAGYI, Zinaida PEROVA, Abayomi MOSAKU, Ross THORNE, Alex FOLLETTE, Ľuboslav PIVARČ, Radim ŠAŠINKA, Muhammad USMAN, Steven NEUHAUSER, Dale A BEGLEY, Debra M KRUPKE, Massimiliano FRASSÀ, Alessandro FIORI, Riccardo CORSI, Luca VEZZADINI, Claudio ISELLA, Andrea BERTOTTI, Carol BULT, Helen PARKINSON, Enzo MEDICO, Terrence MEEHAN a Aleš KŘENEK. The EurOPDX Data Portal: an open platform for patient-derived cancer xenograft data sharing and visualization. BMC Genomics. BioMed Central, 2022, roč. 23, č. 1, s. 1-11. ISSN 1471-2164. Dostupné z: https://dx.doi.org/10.1186/s12864-022-08367-1.

FILIPOVIČ, Jiří, Jana HOZZOVÁ, Amin NEZARAT, Jaroslav OĽHA a Filip PETROVIČ. Using hardware performance counters to speed up autotuning convergence on GPUs. Journal of Parallel and Distributed Computing. Elsevier, 2022, roč. 160, February, s. 16-35. ISSN 0743-7315. Dostupné z: https://dx.doi.org/10.1016/j.jpdc.2021.10.003.

TÓTH, Adrián a Mouzhi GE. A Deployable Data as a Service Architecture for Enterprises. Online. In 978-989-758-504-3. PROCEEDINGS OF THE 6TH INTERNATIONAL CONFERENCE ON INTERNET OF THINGS, BIG DATA AND SECURITY (IOTBDS). SETUBAL: SCITEPRESS, 2021, s. 278-285. ISBN 978-989-758-504-3. Dostupné z: https://dx.doi.org/10.5220/0010470702780285.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. A Hybrid Data-driven Model for Intrusion Detection in VANET. Online. In Shakshuki, E; Yasar, A. The 12th International Conference on Ambient Systems, Networks and Technologies (ANT 2021). Warsaw, Poland: Elsevier Science, 2021, s. 516-523. ISSN 1877-0509. Dostupné z: https://dx.doi.org/10.1016/j.procs.2021.03.065.

STŘELÁK, David, Amaya JIMÉNEZ-MORENO, José VILAS, Erney RAMÍREZ-APORTELA, Ruben SÁNCHEZ-GARCÍA, David MALUENDA, Javier VARGAS, David HERREROS, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, Jan HORÁČEK, David MYŠKA, Martin HORÁČEK, Pablo CONESA, Yunior FONSECA-REYNA, Jorge JIMÉNEZ, Marta MARTÍNEZ, Mohamad HARASTANI, Slavica JONIĆ, Jiří FILIPOVIČ, Roberto MARABINI, José CARAZO a Carlos SORZANO. Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion. Molecules. Mayer und Muller, 2021, roč. 26, č. 20, s. 1-14. ISSN 1420-3049. Dostupné z: https://dx.doi.org/10.3390/molecules26206224.

HERREROS, David, Roy R LEDERMAN, James KRIEGER, Amaya JIMENEZ-MORENO, Marta MARTINEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Ivet BAHAR, Jose Maria CARAZO a Carlos Oscar S SANCHEZ. Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials. International Union of Crystallography Journals. online, 2021, roč. 8, č. 6, s. 992-1005. ISSN 2052-2525. Dostupné z: https://dx.doi.org/10.1107/S2052252521008903.

REIHS, Robert, Rumyana PROYNOVA, Saher MAQSOOD, Maxmilian ATAIAN, Martin LABLANS, Philip R. QUINLAN, Emma LAWRENCE, Erinna BOWMAN, Esther VAN ENCKEVORT, Dominik František BUČÍK, Heimo MÜLLER a Petr HOLUB. BBMRI-ERIC Negotiator: Implementing Efficient Access to Biobanks. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2021, 8 s. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2020.0144.

SILLITOE, Ian, Nicola BORDIN, Natalie DAWSON, Vaishali P. WAMAN, Paul ASHFORD, Harry M. SCHOLES, Camilla S.M. PANG, Laurel WOODRIDGE, Clemens RAUER, Neeladri SEN, Mahnaz ABBASIAN, Sean LE CORNU, Su Datt LAM, Karel BERKA, Ivana HUTAŘOVÁ VAŘEKOVÁ, Radka SVOBODOVÁ, Jon LEES a Christine A. ORENGO. CATH: increased structural coverage of functional space. Nucleic Acids Research. Oxford: Oxford University Press, 2021, roč. 49, D1, s. "D266"-"D273", 8 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkaa1079.

LÍŠKA, Martin, Dávid LUPTÁK, Vít STARÝ NOVOTNÝ, Michal RŮŽIČKA, Boris SHMINKE, Petr SOJKA, Michal ŠTEFÁNIK a Makarius WENZEL. CICM'21 Systems Entries. Online. In 978-3-030-81097-9. INTELLIGENT COMPUTER MATHEMATICS (CICM 2021). CHAM: SPRINGER INTERNATIONAL PUBLISHING AG, 2021, s. 245-248. ISBN 978-3-030-81096-2. Dostupné z: https://dx.doi.org/10.1007/978-3-030-81097-9_20.

HOŠEK, Štěpán, Oldřich FALDÍK, Oldřich TRENZ a Barbora BÜHNOVÁ. Cloud platforms: An overview considering options for Digital Twin implementation. In 23rd international conference Economic Competitiveness and Sustainability (ECOS). 2021.

VIŠŇOVSKÝ, Vladimír, Viktória SPIŠAKOVÁ, Jana HOZZOVÁ, Jaroslav OĽHA, Dalibor TRAPL, Vojtěch SPIWOK, Lukáš HEJTMÁNEK a Aleš KŘENEK. Complex simulation workflows in containerized high-performance environment. In Armenia S., Geril P. Proc. ESM 2021. Brusel: EUROSIS, 2021, s. 42-45. ISBN 978-94-92859-18-1.

DAMBORSKÝ, Jiří, David BEDNÁŘ, Zbyněk PROKOP, Martin MAREK, Stanislav MAZURENKO, Jan ŠTOURAČ, Sérgio Manuel MARQUES, Gabriela Filipa FONSECA PINTO, Joan PLANAS IGLESIAS, Miloš MUSIL, Jiří HON, Ondřej VÁVRA, Rayyan Tariq KHAN, Jiří FILIPOVIČ a Barbora KOZLÍKOVÁ. Computational enzyme design for metabolic engineering. In The 45th FEBS Congress. 2021. ISSN 2211-5463.

RAČEK, Tomáš a Ondřej SCHINDLER. COMPUTER-AIDED MODEL DESIGN OF EMPIRICAL METHODS FOR CALCULATING PARTIAL ATOMIC CHARGES. Online. In 978-9-492-85918-1. MODELLING AND SIMULATION 2021: 35TH ANNUAL EUROPEAN SIMULATION AND MODELLING CONFERENCE 2021 (ESM 2021). GHENT: EUROSIS, 2021, s. 16-20. ISBN 978-94-92859-18-1.

GRYGA, Lukáš a Bruno ROSSI. Co-simulation of Smart Grids: Dynamically Changing Topologies in Failure Scenarios. Online. In International Conference on Complexity, Future Information Systems and Risk (Complexis 2021). Setúbal, Portugal: SciTePress, 2021, s. 63-69. ISBN 978-989-758-505-0. Dostupné z: https://dx.doi.org/10.5220/0010448700630069.

SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA a Vlastislav DOHNAL. Data-driven Learned Metric Index: an Unsupervised Approach. In 14th International Conference on Similarity Search and Applications (SISAP 2021). Cham: Springer, 2021, s. 81-94. ISBN 978-3-030-89656-0. Dostupné z: https://dx.doi.org/10.1007/978-3-030-89657-7_7.

JIMÉNEZ-MORENO, Amaya, David STŘELÁK, Jiří FILIPOVIČ, José María CARAZO a Carlos Óscar S. SORZANO. DeepAlign, a 3D Alignment Method based on Regionalized Deep Learning for Cryo-EM. Journal of Structural Biology. San Diego,USA: Academic Press, 2021, roč. 213, č. 2, s. "107712", 14 s. ISSN 1047-8477. Dostupné z: https://dx.doi.org/10.1016/j.jsb.2021.107712.

RAI, A., Matej PIVOLUSKA, Martin PLESCH, S. SASMAL, M. BANIK a S. GHOSH. Device-independent bounds from Cabello's nonlocality argument. Physical review A. New York: The American Physical Society, 2021, roč. 103, č. 6, s. 1-7. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.103.062219.

HAPPE, Lucia, Barbora BÜHNOVÁ, Anne KOZIOLEK a Ingo WAGNER. Effective measures to foster girls’ interest in secondary computer science education. Education and Information Technologies. Neuveden: Springer, 2021, roč. 2020, November, s. 1-19. ISSN 1360-2357. Dostupné z: https://dx.doi.org/10.1007/s10639-020-10379-x.

WITTNER, Rudolf, Jörg GEIGER, Cecilia MASCIA, Francesca FREXIA, Heimo MULLER a Petr HOLUB. Enabling Trustworthy and Traceable Research by Non-Repudiable Opaque Provenance in a Distributed Environment. In Provenance Week 2021; Workshop on Provenance for Transparent Research. 2021.

IQBAL, Danish a Barbora BÜHNOVÁ. Fog Based Energy Efficient Process Framework for Smart Building. In EASE 2021: Evaluation and Assessment in Software Engineering. Trondheim, Norway: ACM, 2021, s. 387-393. ISBN 978-1-4503-9053-8. Dostupné z: https://dx.doi.org/10.1145/3463274.3463364.

REHM, Heidi L, Angela J H PAGE, Lindsay SMITH, Jeremy B ADAMS, Gil ALTEROVITZ, Lawrence J BABB, Maxmillian P BARKLEY, Michael BAUDIS, Michael J S BEAUVAIS, Tim BECK, Jacques S BECKMANN, Sergi BELTRAN, David BERNICK, Alexander BERNIER, James K BONFIELD, Tiffany F BOUGHTWOOD, Guillaume BOURQUE, Sarion R BOWERS, Anthony J BROOKES, Michael BRUDNO, Matthew H BRUSH, David BUJOLD, Tony BURDETT, Orion J BUSKE, Moran N CABILI, Daniel L CAMERON, Robert J CARROLL, Esmeralda CASAS-SILVA, Debyani CHAKRAVARTY, Bimal P CHAUDHARI, Shu Hui CHEN, J Michael CHERRY, Justina CHUNG, Melissa CLINE, Hayley L CLISSOLD, Robert M COOK-DEEGAN, Melanie COURTOT, Fiona CUNNINGHAM, Miro CUPAK, Robert M DAVIES, Danielle DENISKO, Megan J DOERR, Lena I DOLMAN, Edward S DOVE, L Jonathan DURSI, Stephanie O M DYKE, James A EDDY, Karen EILBECK, Kyle P ELLROTT, Susan FAIRLEY, Khalid A FAKHRO, Helen V FIRTH, Michael S FITZSIMONS, Marc FIUME, Paul FLICEK, Ian M FORE, Mallory A FREEBERG, Robert R FREIMUTH, Lauren A FROMONT, Jonathan FUERTH, Clara L GAFF, Weiniu GAN, Elena M GHANAIM, David GLAZER, Robert C GREEN, Malachi GRIFFITH, Obi L GRIFFITH, Robert L GROSSMAN, Tudor GROZA, Jaime M Guidry AUVIL, Roderic GUIGO, Dipayan GUPTA, Melissa A HAENDEL, Ada HAMOSH, David P HANSEN, Reece K HART, Dean Mitchell HARTLEY, David HAUSSLER, Rachele M HENDRICKS-STURRUP, Calvin W L HO, Ashley E HOBB, Michael M HOFFMAN, Oliver M HOFMANN, Petr HOLUB, Jacob Shujui HSU, Jean-Pierre HUBAUX, Sarah E HUNT, Ammar HUSAMI, Julius O JACOBSEN, Saumya S JAMUAR, Elizabeth L JANES, Francis JEANSON, Aina JENE, Amber L JOHNS, Yann JOLY, Steven J M JONES, Alexander KANITZ, Kazuto KATO, Thomas M KEANE, Kristina KEKESI-LAFRANCE, Jerome KELLEHER, Giselle KERRY, Seik-Soon KHOR, Bartha M KNOPPERS, Melissa A KONOPKO, Kenjiro KOSAKI, Martin KUBA, Jonathan LAWSON, Rasko LEINONEN, Stephanie LI, Michael F LIN, Mikael LINDEN, Xianglin LIU, Isuru Udara LIYANAGE, Javier LOPEZ, Anneke M LUCASSEN, Michael LUKOWSKI, Alice L MANN, John MARSHALL, Michele MATTIONI, Alejandro METKE-JIMENEZ, Anna MIDDLETON, Richard J MILNE, Fruzsina MOLNAR-GABOR, Nicola MULDER, Monica C MUNOZ-TORRES, Rishi NAG, Hidewaki NAKAGAWA, Jamal NASIR, Arcadi NAVARRO, Tristan H NELSON, Ania NIEWIELSKA, Amy NISSELLE, Jeffrey NIU, Tommi H NYRONEN, Brian D CONNOR, Sabine OESTERLE, Soichi OGISHIMA, Vivian Ota WANG, Laura A D PAGLIONE, Emilio PALUMBO, Helen E PARKINSON, Anthony A PHILIPPAKIS, Angel D PIZARRO, Andreas PRLIC, Jordi RAMBLA, Augusto RENDON, Renee A RIDER, Peter N ROBINSON, Kurt W RODARMER, Laura Lyman RODRIGUEZ, Alan F RUBIN, Manuel RUEDA, Gregory A RUSHTON, Rosalyn S RYAN, Gary I SAUNDERS, Helen SCHUILENBURG, Torsten SCHWEDE, Serena SCOLLEN, Alexander SENF, Nathan C SHEFFIELD, Neerjah SKANTHARAJAH, Albert V SMITH, Heidi J SOFIA, Dylan SPALDING, Amanda B SPURDLE, Zornitza STARK, Lincoln D STEIN, Makoto SUEMATSU, Patrick TAN, Jonathan A TEDDS, Alastair A THOMSON, Adrian THOROGOOD, Timothy L TICKLE, Katsushi TOKUNAGA, Juha TOMROOS, David TORRENTS, Sean UPCHURCH, Alfonso VALENCIA, Roman Valls GUIMERA, Jessica VAMATHEVAN, Susheel VARMA, Danya F VEARS, Coby VINER, Craig VOISIN, Alex H WAGNER, Susan E WALLACE, Brian P WALSH, Marc S WILLIAMS, Eva C WINKLER, Barbara J WOLD, Grant M WOOD, J Patrick WOOLLEY, Chisato YAMASAKI, Andrew D YATES, Christina K YUNG, Lyndon J ZASS, Ksenia ZAYTSEVA, Junjun ZHANG, Peter GOODHAND, Kathryn NORTH a Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. AMSTERDAM: Cell Press, 2021, roč. 1, č. 2, s. 1-33. ISSN 2666-979X. Dostupné z: https://dx.doi.org/10.1016/j.xgen.2021.100029.

REHM, Heidi, Angela PAGE, Lindsay SMITH, Jeremy ADAMS, Gil ALTEROVITZ, Lawrence BABB, Maxmillian BARKLEY, Michael BAUDIS, Michael BEAUVAIS, Tim BECK, Jacques BECKMANN, Sergi BELTRAN, David BERNICK, Alexander BERNIER, James BONFIELD, Tiffany BOUGHTWOOD, Guillaume BOURQUE, Sarion BOWERS, Anthony BROOKES, Michael BRUDNO, Matthew BRUSH, David BUJOLD, Tony BURDETT, Orion BUSKE, Moran CABILI, Daniel CAMERON, Robert CARROLL, Esmeralda CASAS-SILVA, Debyani CHAKRAVARTY, Bimal CHAUDHARI, Shu Hui CHEN, Michael CHERRY, Justina CHUNG, Melissa CLINE, Hayley CLISSOLD, Robert COOK-DEEGAN, Mélanie COURTOT, Fiona CUNNINGHAM, Miro CUPAK, Robert DAVIES, Danielle DENISKO, Megan DOERR, Lena DOLMAN, Edward DOVE, Jonathan DURSI, Stephanie DYKE, James EDDY, Karen EILBECK, Kyle ELLROTT, Susan FAIRLEY, Khalid FAKHRO, Helen FIRTH, Michael FITZSIMONS, Marc FIUME, Paul FLICEK, Ian FORE, Mallory FREEBERG, Robert FREIMUTH, Lauren FROMONT, Jonathan FUERTH, Clara GAFF, Weiniu GAN, Elena GHANAIM, David GLAZER, Robert GREEN, Malachi GRIFFITH, Obi GRIFFITH, Robert GROSSMAN, Tudor GROZA, Jaime Guidry AUVIL, Roderic GUIGÓ, Dipayan GUPTA, Melissa HAENDEL, Ada HAMOSH, David HANSEN, Reece HART, Dean Mitchell HARTLEY, David HAUSSLER, Rachele HENDRICKS-STURRUP, Calvin HO, Ashley HOBB, Michael HOFFMAN, Oliver HOFMANN, Petr HOLUB, Jacob Shujui HSU, Jean-Pierre HUBAUX, Sarah HUNT, Ammar HUSAMI, Julius JACOBSEN, Saumya JAMUAR, Elizabeth JANES, Francis JEANSON, Aina JENÉ, Amber JOHNS, Yann JOLY, Steven JONES, Alexander KANITZ, Kazuto KATO, Thomas KEANE, Kristina KEKESI-LAFRANCE, Jerome KELLEHER, Giselle KERRY, Seik-Soon KHOR, Bartha KNOPPERS, Melissa KONOPKO, Kenjiro KOSAKI, Martin KUBA, Jonathan LAWSON, Rasko LEINONEN, Stephanie LI, Michael LIN, Mikael LINDEN, Xianglin LIU, Isuru Udara LIYANAGE, Javier LOPEZ, Anneke LUCASSEN, Michael LUKOWSKI, Alice MANN, John MARSHALL, Michele MATTIONI, Alejandro METKE-JIMENEZ, Anna MIDDLETON, Richard MILNE, Fruzsina MOLNÁR-GÁBOR, Nicola MULDER, Monica MUNOZ-TORRES, Rishi NAG, Hidewaki NAKAGAWA, Jamal NASIR, Arcadi NAVARRO, Tristan NELSON, Ania NIEWIELSKA, Amy NISSELLE, Jeffrey NIU, Tommi NYRÖNEN, O Connor BRIAN, Sabine OESTERLE, Soichi OGISHIMA, Vivian Ota WANG, Laura PAGLIONE, Emilio PALUMBO, Helen PARKINSON, Anthony PHILIPPAKIS, Angel PIZARRO, Andreas PRLIC, Jordi RAMBLA, Augusto RENDON, Renee RIDER, Peter ROBINSON, Kurt RODARMER, Laura Lyman RODRIGUEZ, Alan RUBIN, Manuel RUEDA, Gregory RUSHTON, Rosalyn RYAN, Gary SAUNDERS, Helen SCHUILENBURG, Torsten SCHWEDE, Serena SCOLLEN, Alexander SENF, Nathan SHEFFIELD, Neerjah SKANTHARAJAH, Albert SMITH, Heidi SOFIA, Dylan SPALDING, Amanda SPURDLE, Zornitza STARK, Lincoln STEIN, Makoto SUEMATSU, Patrick TAN, Jonathan TEDDS, Alastair THOMSON, Adrian THOROGOOD, Timothy TICKLE, Katsushi TOKUNAGA, Juha TÖRNROOS, David TORRENTS, Sean UPCHURCH, Alfonso VALENCIA, Roman VALLS GUIMERA, Jessica VAMATHEVAN, Susheel VARMA, Danya VEARS, Coby VINER, Craig VOISIN, Alex WAGNER, Susan WALLACE, Brian WALSH, Marc WILLIAMS, Eva WINKLER, Barbara WOLD, Grant WOOD, Patrick WOOLLEY, Chisato YAMASAKI, Andrew YATES, Christina YUNG, Lyndon ZASS, Ksenia ZAYTSEVA, Junjun ZHANG, Peter GOODHAND, Kathryn NORTH a Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. Cell Press, 2021, roč. 2021, č. 1, s. 1-9. ISSN 2666-979X. Dostupné z: https://dx.doi.org/10.1016/j.xgen.2021.100029.

VOISIN, Craig, Mikael LINDEN, Stephanie DYKE, Sarion BOWERS, Pinar ALPER, Maxmillian BARKLEY, David BERNICK, Jianpeng CHAO, Mélanie COURTOT, Francis JEANSON, Melissa KONOPKO, Martin KUBA, Jonathan LAWSON, Jaakko LEINONEN, Stephanie LI, Vivian WANG, Anthony PHILIPPAKIS, Kathy REINOLD, Gregory RUSHTON, J. Dylan SPALDING, Juha TÖRNROOS, Ilya TULCHINSKY, Jaime M. Guidry AUVIL a Tommi NYRÖNEN. GA4GH Passport standard for digital identity and access permissions. Cell Genomics. Elsevier, 2021, roč. 1, č. 2, s. "100030", 16 s. ISSN 2666-979X. Dostupné z: https://dx.doi.org/10.1016/j.xgen.2021.100030.

CIOROAICA, Emilia, Akanksha PUROHIT, Barbora BÜHNOVÁ a Daniel SCHNEIDER. Goals within Trust-based Digital Ecosystems. In SESoS/WDES 2021, the joint 9th International Workshop on Software Engineering for Systems-of-Systems (SESoS) and the 15th Workshop on Distributed Software Development, Software Ecosystems and Systems-of-Systems (WDES). USA: IEEE, 2021, s. 1-7. ISBN 978-1-6654-4561-0. Dostupné z: https://dx.doi.org/10.1109/SESoS-WDES52566.2021.00006.

DODA, M., Matej PIVOLUSKA a Martin PLESCH. Choice of mutually unbiased bases and outcome labeling affecting measurement outcome secrecy. Physical review A. New York: The American Physical Society, 2021, roč. 103, č. 3, s. 032206-32213. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.103.032206.

MACÁK, Martin, Štefan BOJNÁK a Barbora BÜHNOVÁ. Identification of Unintentional Perpetrator Attack Vectors using Simulation Game: A Case Study. Online. In Proceedings of the 16th Conference on Computer Science and Intelligence Systems. New York: IEEE, 2021, s. 349-356. ISBN 978-83-959183-8-4. Dostupné z: https://dx.doi.org/10.15439/2021F85.

S. SORZANO, Carlos Oscar, Amaya JIMÉNEZ-MORENO, David MALUENDA, Erney RAMÍREZ-APORTELA, Marta MARTÍNEZ, Ana CUERVO, Roberto MELERO, Jose Javier CONESA, Ruben SÁNCHEZ-GARCÍA, David STŘELÁK, Jiří FILIPOVIČ, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, David HERREROS, Pablo CONESA, Laura DEL CAÑO, Yunior FONSECA, Jorge JIMÉNEZ DE LA MORENA, Jose Ramon MACÍAS, Patricia LOSANA, Roberto MARABINI a Jose-Maria CARAZO. Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods. In Structural Proteomics. Clifton, N.J.: Springer US, 2021, s. 257-289. Methods in Molecular Biology. ISBN 978-1-0716-1405-1. Dostupné z: https://dx.doi.org/10.1007/978-1-0716-1406-8_13.

ŽEŽULKA, Miloslav, Ondřej CHALOUPKA a Bruno ROSSI. Integrating Distributed Tracing into the Narayana Transaction Manager. Online. In International Conference on Complexity, Future Information Systems and Risk (Complexis 2021). Setúbal, Portugal: SciTePress, 2021, s. 55-62. ISBN 978-989-758-505-0. Dostupné z: https://dx.doi.org/10.5220/0010448200550062.

ANTONIADES, Athos, Maria PAPAIOANNOU, Apostolos MALATRAS, Gregory PAPAGREGORIOU, Heimo MULLER, Petr HOLUB, Constantinos DELTAS a Christos N SCHIZAS. Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR. Online. Frontiers in Digital Health. 2021.

WITTNER, Rudolf, Petr HOLUB, Heimo MÜLLER, Joerg GEIGER, Carole GOBLE, Stian SOILAND-REYES, Luca PIREDDU, Francesca FREXIA, Cecilia MASCIA, Elliot FAIRWEATHER, Jason R SWEDLOW, Josh MOORE, Caterina STRAMBIO, David GRUNWALD a Hiroki NAKAE. ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data. In Lecture Notes in Computer Science. Cham: Springer, 2021, s. 222-225. ISBN 978-3-030-80959-1. Dostupné z: https://dx.doi.org/10.1007/978-3-030-80960-7_16.

PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK, Jana HOZZOVÁ a Richard TREMBECKÝ. Kernel Tuning Toolkit 2.0. 2021.

ANTOL, Matej, Jaroslav OĽHA, Terézia SLANINÁKOVÁ a Vlastislav DOHNAL. Learned metric index - proposition of learned indexing for unstructured data. Information Systems. Elsevier, 2021, roč. 100, č. 101774, s. 1-12. ISSN 0306-4379. Dostupné z: https://dx.doi.org/10.1016/j.is.2021.101774.

ANTOL, Matej, Miriama JÁNOŠOVÁ a Vlastislav DOHNAL. Metric hull as similarity-aware operator for representing unstructured data. Pattern Recognition Letters. Amsterdam: Elsevier, 2021, roč. 149, September 2021, s. 91-98. ISSN 0167-8655. Dostupné z: https://dx.doi.org/10.1016/j.patrec.2021.05.011.

NEUMANN, S.P., T. SCHEIDL, M. SELIMOVIC, Matej PIVOLUSKA, B. LIU, M. BOHMANN a R. URSIN. Model for optimizing quantum key distribution with continuous-wave pumped entangled-photon sources. Physical review A. New York: The American Physical Society, 2021, roč. 104, č. 2, s. 022406-22416. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.104.022406.

BLANCO SÁNCHEZ, José Miguel, Mouzhi GE a Tomáš PITNER. Modeling Inconsistent Data for Reasoners in Web of Things. Online. In Procedia Computer Science, Volume 192, 25th KES International Conference on Knowledge-Based and Intelligent Information and Engineering Systems, KES 2021. Szczecin: Elsevier, 2021, s. 1265-1273. ISSN 1877-0509. Dostupné z: https://dx.doi.org/10.1016/j.procs.2021.08.130.

SEHNAL, David, S. BITTRICH, M. DESHPANDE, Radka SVOBODOVÁ, K. BERKA, V. BAZGIER, S. VELANKAR, S.K. BURLEY, Jaroslav KOČA a A.S. ROSE. Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic acids research. Oxford: Oxford University Press, 2021, roč. 49, W1, s. "W431"-"W437", 7 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkab314.

FAIRWEATHER, Elliot, Rudolf WITTNER, Martin CHAPMAN, Petr HOLUB a Vasa CURCIN. Non-repudiable provenance for clinical decision support systems. In Lecture Notes in Computer Science. Cham: Springer, 2021, s. 165-182. ISBN 978-3-030-80959-1. Dostupné z: https://dx.doi.org/10.1007/978-3-030-80960-7_10.

SCHINDLER, Ondřej, Tomáš RAČEK, Aleksandra MARŠAVELSKI, Jaroslav KOČA, Karel BERKA a Radka SVOBODOVÁ. Optimized SQE atomic charges for peptides accessible via a web application. Journal of Cheminformatics. Chemistry Central Ltd. in association with BioMed Central, 2021, roč. 13, č. 1, s. 45-55. ISSN 1758-2946. Dostupné z: https://dx.doi.org/10.1186/s13321-021-00528-w.

SCHINDLER, Ondřej, Tomáš RAČEK, Aleksandra MARŠAVELSKI, Radka SVOBODOVÁ a Jaroslav KOČA. Partial atomic charges for proteins. In 1st Student Conference in Structural Biology, 2021. 2021.

HU, X.M., C. ZHANG, Y. GUO, F.X. WANG, W.B. XING, C.X. HUANG, B.H. LIU, Y.F. HUANG, C.F. LI, G.C. GUO, X.Q. GAO, Matej PIVOLUSKA a M. HUBER. Pathways for Entanglement-Based Quantum Communication in the Face of High Noise. Physical Review Letters. COLLEGE PK: The American Physical Society, 2021, roč. 127, č. 11, s. 1-7. ISSN 0031-9007. Dostupné z: https://dx.doi.org/10.1103/PhysRevLett.127.110505.

SCHINDLER, Ondřej, Tomáš RAČEK, Radka SVOBODOVÁ a Karel BERKA. QM-like partial atomic charges for proteins available online. In ELIXIR CZ Annual Conference 2021. 2021. ISBN 978-80-86241-67-8.

DODA, M., M. HUBER, G. MURTA, Matej PIVOLUSKA, Martin PLESCH a C. VLACHOU. Quantum Key Distribution Overcoming Extreme Noise: Simultaneous Subspace Coding Using High-Dimensional Entanglement. PHYSICAL REVIEW APPLIED. COLLEGE PK: AMER PHYSICAL SOC, 2021, roč. 15, č. 3, s. 034003-34017. ISSN 2331-7019. Dostupné z: https://dx.doi.org/10.1103/PhysRevApplied.15.034003.

BANGUI, Hind a Barbora BÜHNOVÁ. Recent Advances in Machine-Learning Driven Intrusion Detection in Transportation: Survey. Online. In Shakshuki, E; Yasar, A. The 11th International Symposium on Frontiers in Ambient and Mobile Systems. Warsaw, Poland: Elsevier Science, 2021, s. 877-886. ISSN 1877-0509. Dostupné z: https://dx.doi.org/10.1016/j.procs.2021.04.014.

RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Sérgio Manuel MARQUES, Jiří FILIPOVIČ, David BEDNÁŘ a Jiří DAMBORSKÝ. Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning. Computational and Structural Biotechnology Journal. Amsterdam: Elsevier, 2021, roč. 19, May, s. 3187-3197. ISSN 2001-0370. Dostupné z: https://dx.doi.org/10.1016/j.csbj.2021.05.043.

HOZZOVÁ, Jana, Jiří FILIPOVIČ, Amin NEZARAT, Jaroslav OĽHA a Filip PETROVIČ. Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures. Data in Brief. Elsevier, 2021, roč. 39, December, s. 1-12. ISSN 2352-3409. Dostupné z: https://dx.doi.org/10.1016/j.dib.2021.107631.

PIVOLUSKA, Matej, Martin PLESCH, M. FARKAS, Natália RUŽIČKOVÁ, C. FLEGEL, N.H. VALENCIA, W. MCCUTCHEON, M. MALIK a EA AGUILAR. Semi-device-independent random number generation with flexible assumptions. NPJ QUANTUM INFORMATION. BERLIN: NATURE RESEARCH, 2021, roč. 7, č. 1, s. 1-12. ISSN 2056-6387. Dostupné z: https://dx.doi.org/10.1038/s41534-021-00387-1.

MÍČ, Vladimír, Tomáš RAČEK, Aleš KŘENEK a Pavel ZEZULA. Similarity Search for an Extreme Application: Experience and Implementation. In Nora Reyes, Richard Connor, Nils Kriege, Daniyal Kazempour, Ilaria Bartolini, Erich Schubert, Jian-Jia Chen. Similarity Search and Applications: 14th International Conference, SISAP 2021, Dortmund, Germany, September 29 - October 1, 2021, Proceedings. Cham: Springer, 2021, s. 265-279. ISBN 978-3-030-89656-0. Dostupné z: https://dx.doi.org/10.1007/978-3-030-89657-7_20.

HOZZOVÁ, Jana, Ondřej VÁVRA, David BEDNÁŘ a Jiří FILIPOVIČ. Simulation of Ligand Transport in Receptors Using CaverDock. In Flavio Ballante. Protein-Ligand Interactions and Drug Design. New York: Humana, New York, NY, 2021, s. 105-124. Methods in Molecular Biology, vol 2266. ISBN 978-1-0716-1208-8. Dostupné z: https://dx.doi.org/10.1007/978-1-0716-1209-5_6.

SIEGL, František, Marek VEČEŘA, Karolína TRACHTOVÁ, Dagmar AL TUKMACHI, Petr BUŠEK, Pavel FADRUS, Ondřej SLABÝ a Jiří ŠÁNA. Studium PIWI-interagujících RNA v rámci patologie glioblastomu - nová úroveň regulace glioblastomových kmenových buněk? In XLV. Brněnské onkologické dny. XXXV. Konference pro nelékařské zdravotnické pracovníky Laboratorní diagnostika v onkologii 2021. 2021.

SIEGL, František, Marek VEČEŘA, Karolína TRACHTOVÁ, Dagmar AL TUKMACHI, Petr BUŠEK, Pavel FADRUS, Martin SMRČKA, Ondřej SLABÝ a Jiří ŠÁNA. Study of PIWI-Interacting RNAs in the pathology of glioblastoma: a new level of glioblastoma stem cell regulation? In Sborník abstrakt – VII. Sjezd Ukrajinské neurochirurgické společnosti. 2021.

LAWSON, Jonathan, Moran N CABILI, Giselle KERRY, Tiffany BOUGHTWOOD, Adrian THOROGOOD, Pinar ALPER, Sarion R BOWERS, Rebecca R BOYLES, Anthony J BROOKES, Matthew BRUSH, Tony BURDETT, Hayley CLISSOLD, Stacey DONNELLY, Stephanie O M DYKE, Mallory A FREEBERG, Melissa A HAENDEL, Chihiro HATA, Petr HOLUB, Francis JEANSON, Aina JENE, Minae KAWASHIMA, Shuichi KAWASHIMA, Melissa KONOPKO, Irene KYOMUGISHA, Haoyuan LI, Mikael LINDEN, Laura Lyman RODRIGUEZ, Mizuki MORITA, Nicola MULDER, Jean MULLER, Satoshi NAGAIE, Jamal NASIR, Soichi OGISHIMA, Vivian Ota WANG, Laura D PAGLIONE, Ravi N PANDYA, Helen PARKINSON, Anthony A PHILIPPAKIS, Fabian PRASSER, Jordi RAMBLA, Kathy REINOLD, Gregory A RUSHTON, Andrea SALTZMAN, Gary SAUNDERS, Heidi J SOFIA, John D SPALDING, Morris A SWERTZ, Ilia TULCHINSKY, J ESTHER, van ENCKEVORT, Susheel VARMA, Craig VOISIN, Natsuko YAMAMOTO, Chisato YAMASAKI, Lyndon ZASS, M JAIME, Guidry AUVIL, Tommi H NYRÖNEN a Mélanie COURTOT. The Data Use Ontology to streamline responsible access to human biomedical datasets. Cell Genomics. 2021, roč. 1, č. 2, s. 1-9, 12 s. ISSN 2666-979X. Dostupné z: https://dx.doi.org/10.1016/j.xgen.2021.100028.

FARIA ZENI, Pedro, Michaela MEDKOVÁ, Karolína TRACHTOVÁ, Václav ŠEDA, Sonali SHARMA, Josef VEČEŘA, Laura ONDRIŠOVÁ, Miroslav BOUDNÝ, Veronika PALUŠOVÁ, Veronika ŠANDOVÁ, Daniel FILIP, Lenka KOŠŤÁLOVÁ a Marek MRÁZ. The role of long non-coding RNAs in the BCR-mediated activation of malignant B cells. In Ceitec PhD Conference. 2021.

BANGUI, Hind, Mouzhi GE, Barbora BÜHNOVÁ a Le Hong TRANG. Towards Faster Big Data Analytics for Anti-Jamming Applications in vehicular ad-hoc network. Transactions on Emerging Telecommunications Technologies. ENGLAND: WILEY, 2021, roč. 32, č. 10, s. 1-18. ISSN 2161-3915. Dostupné z: https://dx.doi.org/10.1002/ett.4280.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Trust-based Authentication for Smart Home Systems. Wireless Personal Communications. Springer, 2021, roč. 117, č. 3, s. 2157-2172. ISSN 0929-6212. Dostupné z: https://dx.doi.org/10.1007/s11277-020-07965-0.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Trust-based Detection Strategy against Replication Attacks in IoT. Online. In Makoto Takizawa, Leonard Barolli, Donald Elmazi. The 35th International Conference on Advanced Information Networking and Applications (AINA-2021). Springer International Publi. Toronto, Canada: Springer, 2021, s. 646-656. ISBN 978-3-030-75074-9. Dostupné z: https://dx.doi.org/10.1007/978-3-030-75075-6_53.

MIDLIK, Adam, Veronika NAVRÁTILOVÁ, Tarakaramji MOTURU, Jaroslav KOČA, Radka SVOBODOVÁ a K. BERKA. Uncovering of cytochrome P450 anatomy by SecStrAnnotator. Nature Scientific Reports. London: NATURE RESEARCH, 2021, roč. 11, č. 1, s. 12345-12356. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/s41598-021-91494-8.

MACÁK, Martin, Daniela KRÚŽELOVÁ, Stanislav CHREN a Barbora BÜHNOVÁ. Using Process Mining for Git Log Analysis of Projects in a Software Development Course. Education and Information Technologies. 2021, roč. 26, č. 5, s. 5939-5969. ISSN 1360-2357. Dostupné z: https://dx.doi.org/10.1007/s10639-021-10564-6.

ČEGAN, Jakub, Tomáš KACVINSKÝ, Zdeněk VYDRA, Martin LEBEDA, Jakub Bartolomej KOŠUTH, Petr VELAN, Milan ČERMÁK, Andrej TOMČI, Ivo NUTÁR, Martin LAŠTOVIČKA, Natálie VELECKÁ, Pavla VIZVÁRY, Vojtěch HAMERSKÝ, Daniel KOUŘIL, Ondřej BUDAY, Martin KOTLÍK, Vladimír ROHEL, Jiří SÝKORA, Michal ZVÁNOVEC, Filip GRÉGR a Petr SLAVÍK. Virtualizované prostředí pro trénink CSIRT týmu. 2021.

ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK a Otto DOSTÁL. Zero Watermarking: Critical Analysis of Its Role in Current Medical Imaging. Journal of Digital Imaging. 2021, roč. 34, č. 1, s. 204-211. ISSN 0897-1889. Dostupné z: https://dx.doi.org/10.1007/s10278-020-00396-0.

HUTAŘOVÁ VAŘEKOVÁ, Ivana, Jan HUTAŘ, Adam MIDLIK, Vladimír HORSKÝ, Eva HLADKÁ, Radka SVOBODOVÁ a Karel BERKA. 2DProts: database of family-wide protein secondary structure diagrams. Bioinformatics. Oxford University Press, 2021, roč. 37, č. 23, s. 4599-4601. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btab505.

BRÁZDIL, Tomáš, David PORTEŠ, Jiří FILIPOVIČ, Jana HOZZOVÁ, Thomas EVANGELIDIS a Konstantinos TRIPSIANES. 4D-GRAPHS. 2021.

PETROVIČ, Filip, David STŘELÁK, Jana HOZZOVÁ, Jaroslav OĽHA, Richard TREMBECKÝ, Siegfried BENKNER a Jiří FILIPOVIČ. A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Generation Computer Systems. Elsevier, 2020, roč. 108, July, s. 161-177. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2020.02.069.

MACÁK, Martin, Mouzhi GE a Barbora BÜHNOVÁ. A Cross-domain Comparative Study of Big Data Architectures. International Journal of Cooperative Information Systems. 2020, roč. 29, č. 4, s. 1-27. ISSN 0218-8430. Dostupné z: https://dx.doi.org/10.1142/S0218843020300016.

ROSSI, Bruno. A Large-Scale Replication of Smart Grids Power Consumption Anomaly Detection. Online. In Gary Wills, Péter Kacsuk, and Victor Chang. Proceedings of the 5th International Conference on Internet of Things, Big Data and Security (IoTBDS). Setubal, Portugal: SciTePress, 2020, s. 288-295. ISBN 978-989-758-426-8. Dostupné z: https://dx.doi.org/10.5220/0009396402880295.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. An Efficient Mutual Authentication Scheme for Internet of Things. Internet of Things Journal. ELSEVIER, 2020, roč. 9, č. 1, s. 1-9. ISSN 2543-1536. Dostupné z: https://dx.doi.org/10.1016/j.iot.2020.100160.

MBAREK, Bacem, Stanislav CHREN, Bruno ROSSI a Tomáš PITNER. An Enhanced Blockchain-Based Data Management Scheme for Microgrids. Online. In Barolli, L., Amato, F., Moscato, F., Enokido, T., Takizawa, M. Web, Artificial Intelligence and Network Applications (WAINA 2020). Caserta, Italy: Springer International Publishing, 2020, s. 766-775. ISBN 978-3-030-44037-4. Dostupné z: https://dx.doi.org/10.1007/978-3-030-44038-1_70.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Daniel TOVARŇÁK, Pavel ZEZULA, Martin MACÁK, Matúš GUOTH, Matej BABEJ, Dávid BRILLA a Martin KAŽIMÍR. ANALYZA – Datový sklad. 2020.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Jarešová MIROSLAVA, Barbora KOZLÍKOVÁ, Kristína ZÁKOPČANOVÁ, Pavel ZEZULA, Katarína FURMANOVÁ, Marko ŘEHÁČEK, Jozef BÁTRNA a Daniel PLAKINGER. ANALYZA – Vizualizační komponenta – Visilant. 2020.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Barbora KOZLÍKOVÁ, Vladimír MÍČ, Filip NÁLEPA, David NOVÁK, Daniel TOVARŇÁK, Pavel ZEZULA, Jakub PESCHEL, Kasanič DENIS, Denisa ŠRÁMKOVÁ, Erik HRICIŠÁK, Vladimír LAZÁRIK a Kristián GUTIČ. ANALYZA – Výpočetní a orchestrační subsystém. 2020.

LHOTÁK, Marin, Martin DUDA, Andrea FOJTŮ, Jan HEJZL, Jan HUTAŘ, Filip KERSCH, Jana KŘÍŽOVÁ, Marek MELICHAR, Martina NEZBEDOVÁ, Miroslav PAVELKA, Eliška PAVLÁSKOVÁ, Jan POKORSKÝ, Michal PŠENIČKA, Ivana ŠLAPÁKOVÁ, Zdeněk TICHÝ, Miroslav BARTOŠEK, Jan BILWACHS, Lukáš HEJTMÁNEK, Zdeněk HRUŠKA, Václav JIROUŠEK, Pavlína KOČIŠOVÁ, Vlastimil KREJČÍŘ, Iveta LODROVÁ, Natalie OSTRÁKOVÁ, Michal RŮŽIČKA, Zdeněk VAŠEK a Petr ŽABIČKA. ARCLib. 2020.

GEŠVINDR, David, Ondřej GASIOR a Barbora BÜHNOVÁ. Architecture design evaluation of PaaS cloud applications using generated prototypes: PaaSArch Cloud Prototyper tool. Journal of Systems and Software. Elsevier, 2020, roč. 169, November, s. 1-21. ISSN 0164-1212. Dostupné z: https://dx.doi.org/10.1016/j.jss.2020.110701.

RAČEK, Tomáš, Ondřej SCHINDLER, Dominik TOUŠEK, Vladimír HORSKÝ, Karel BERKA, Jaroslav KOČA a Radka SVOBODOVÁ. Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. Nucleic acids research. Oxford: Oxford University Press, 2020, roč. 48, W1, s. "W591"-"W596", 6 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkaa367.

DUDOVÁ, Zdenka, Alice HÁLOVÁ, Dalibor VALÍK a Petr HOLUB. BBMRI-CZ as a Partner for Personalized Medicine and Translational Medical Research. In RANK 2020. 2020. ISBN 978-80-87436-17-2.

HOLUB, Petr, Lukasz KOZERA, Francesco FLORINDI, Esther van ENCKEVORT, Morris SWERTZ, Robert REIHS, Andrea WUTTE, Dalibor VALÍK a Michaela Th MAYRHOFER. BBMRI-ERIC’s contributions to research and knowledge exchange on COVID-19. European Journal of Human Genetics. London: Nature Publishing Group, 2020, roč. 28, č. 6, s. 728-731. ISSN 1018-4813. Dostupné z: https://dx.doi.org/10.1038/s41431-020-0634-8.

MACÁK, Martin, Hind BANGUI, Barbora BÜHNOVÁ, András J. MOLNÁR a Csaba István SIDLÓ. Big Data Processing Tools Navigation Diagram. Online. In Proceedings of the 5th International Conference on Internet of Things, Big Data and Security - Volume 1: IoTBDS. Setubal, Portugal: SciTePress, 2020, s. 304-312. ISBN 978-989-758-426-8. Dostupné z: https://dx.doi.org/10.5220/0009406403040312.

SEHNAL, David, Sebastian BITTRICH, Sameer VELANKAR, Jaroslav KOČA, Radka SVOBODOVÁ, Stephen K. BURLEY a Alexander S. ROSE. BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. PLoS Computational Biology. San Francisco: Public Library of Science, 2020, roč. 16, č. 10, s. 1-13. ISSN 1553-734X. Dostupné z: https://dx.doi.org/10.1371/journal.pcbi.1008247.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Blockchain-based Access Control for IoT in Smart Home Systems. Online. In Proceedings of the 31st International Conference on Database and Expert Systems Applications - DEXA 2020. Bratislava, Slovakia: Springer, 2020, s. 17-32. ISBN 978-3-030-59050-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-59051-2_2.

CIOROAICA, Emilia, Barbora BÜHNOVÁ, Thomas KUHN a Daniel SCHNEIDER. Building trust in the untrustable. Online. In Proceedings of the ACM/IEEE 42nd International Conference on Software Engineering: Software Engineering in Society. USA: ACM, 2020, s. 21-24. ISBN 978-1-4503-7125-4. Dostupné z: https://dx.doi.org/10.1145/3377815.3381378.

FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Los Alamitos: IEEE Computer Society, 2020, roč. 17, č. 5, s. 1625-1638. ISSN 1545-5963. Dostupné z: https://dx.doi.org/10.1109/TCBB.2019.2907492.

ISON, Jon, Hervé MÉNAGER, Brancotte BRYAN, Erik JAANISO, Ahto SALUMETS, Tomáš RAČEK, Anna-Lena LAMPRECHT, Magnus PALMBLAD, Matúš KALAŠ, Piotr CHMURA, John M HANCOCK, Veit SCHWÄMMLE a Hans-Ioan IENASESCU. Community curation of bioinformatics software and data resources. Briefings in Bioinformatics. Oxford University Press, 2020, roč. 21, č. 5, s. 1697-1705. ISSN 1467-5463. Dostupné z: https://dx.doi.org/10.1093/bib/bbz075.

STREČANSKÝ, Peter, Stanislav CHREN a Bruno ROSSI. Comparing Maintainability Index, SIG Method, and SQALE for Technical Debt Identification. Scientific programming. Hindawi, 2020, roč. 2020, 20 Jul 2020, s. 1-14. ISSN 1058-9244. Dostupné z: https://dx.doi.org/10.1155/2020/2976564.

STREČANSKÝ, Peter, Stanislav CHREN a Bruno ROSSI. Comparing Maintainability Index, SIG Method, and SQALE for Technical Debt Identification. In 35th ACM/SIGAPP Symposium On Applied Computing. Brno, Czech Republic: ACM, 2020, s. 121-124. ISBN 978-1-4503-6866-7. Dostupné z: https://dx.doi.org/10.1145/3341105.3374079.

JAVORNÍK, Michal, Jana KOMÁRKOVÁ, Lukáš SADLEK a Martin HUSÁK. Decision Support for Mission-Centric Network Security Management. Online. In NOMS 2020 - 2020 IEEE/IFIP Network Operations and Management Symposium. Budapest, Hungary: IEEE, 2020, s. 1-6. ISBN 978-1-7281-4973-8. Dostupné z: https://dx.doi.org/10.1109/NOMS47738.2020.9110261.

YANG, Qishan, Mouzhi GE a Markus HELFERT. Developing Reliable Taxonomic Features for Data Warehouse Architectures. Online. In Proceedings of the 22nd IEEE International Conference on Business Informatics - CBI 2020. Antwerp, Belgium: IEEE, 2020, s. 241-249. ISBN 978-1-7281-9926-9. Dostupné z: https://dx.doi.org/10.1109/CBI49978.2020.00033.

GE, Mouzhi a Wlodzimierz LEWONIEWSKI. Developing the Quality Model for Collaborative Open Data. Online. In Proceedings of the 24th International Conference on Knowledge-Based and Intelligent Information and Engineering Systems - KES 2020. 176. vyd. Verona, Italy: Elsevier Procedia Computer Science, 2020, s. 1883-1892. ISSN 1877-0509. Dostupné z: https://dx.doi.org/10.1016/j.procs.2020.09.228.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Enhanced Network Intrusion Detection System Protocol for Internet of Things. Online. In Proceedings of the 35th ACM/SIGAPP Symposium On Applied Computing. Brno, Czech Republic: ACM Publishing, 2020, s. 1156-1163. ISBN 978-1-4503-6866-7. Dostupné z: https://dx.doi.org/10.1145/3341105.3373867.

CATCHPOOLE, Daniel R, Francesco FLORINDI, Caitlin AHERN, Debra Leiolani GARCIA, Piper MULLINS, Esther Van ENCKEVORT, Andy ZAAYENGA, Michaela Th MAYRHOFER a Petr HOLUB. Expanding the BBMRI-ERIC Directory into a Global Catalogue of COVID-19–Ready Collections: A Joint Initiative of BBMRI-ERIC and ISBER. Biopreservation and Biobanking. 2020, roč. 18, č. 5, s. 479-480. Dostupné z: https://dx.doi.org/10.1089/bio.2020.29075.drc.

HU, Xiao-Min, WB. XING, C. ZHANG, BH. LIU, Matej PIVOLUSKA, M. HUBER, YF. HUANG, CF. LI a GC. GUO. Experimental creation of multi-photon high-dimensional layered quantum states. NPJ QUANTUM INFORMATION. BERLIN: NATURE RESEARCH, 2020, roč. 6, č. 1, s. 1-5. ISSN 2056-6387. Dostupné z: https://dx.doi.org/10.1038/s41534-020-00318-6.

OĽHA, Jaroslav, Jana HOZZOVÁ, Jan FOUSEK a Jiří FILIPOVIČ. Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE. HOBOKEN: WILEY, 2020, roč. 32, č. 21, s. 1-15. ISSN 1532-0626. Dostupné z: https://dx.doi.org/10.1002/cpe.5962.

BERAN, Michal, František HRDINA, Daniel KOUŘIL, Radek OŠLEJŠEK a Kristína ZÁKOPČANOVÁ. Exploratory Analysis of File System Metadata for Rapid Investigation of Security Incidents. Online. In 2020 IEEE Symposium on Visualization for Cyber Security (VizSec). Salt Lake City, US: IEEE, 2020, s. 11-20. ISBN 978-1-7281-8262-9. Dostupné z: https://dx.doi.org/10.1109/VizSec51108.2020.00008.

ELAHI, Mehdi, Nabil EL IOINI, Anna LAMBRIX a Mouzhi GE. Exploring Personalized University Ranking and Recommendation. Online. In Proceedings of the 28th ACM Conference on User Modeling, Adaptation and Personalization - UMAP 2020. Genoa, Italy: ACM, 2020, s. 6-10. ISBN 978-1-4503-6711-0. Dostupné z: https://dx.doi.org/10.1145/3386392.3397590.

KŘENEK, Aleš, Jana HOZZOVÁ, Jaroslav OĽHA, Dalibor TRAPL a Vojtěch SPIWOK. Exploring Protein Folding Space with Neural Network Guided Simulations. In Alexandre Nketsa. MODELLING AND SIMULATION 2020. Brusel: EUROSIS-ETI, 2020, s. 305-309. ISBN 978-94-92859-12-9.

STŘELÁK, David, Jiří FILIPOVIČ, Amaya JIMÉNEZ-MORENO, Jose María CARAZO a Carlos Óscar SÁNCHEZ SORZANO. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy. Electronics. Switzerland: MDPI, 2020, roč. 9, č. 6, s. 1-25. ISSN 2079-9292. Dostupné z: https://dx.doi.org/10.3390/electronics9061040.

BÜHNOVÁ, Barbora a Lucia HAPPE. Girl-Friendly Computer Science Classroom: Czechitas Experience Report. Online. In European Conference on Software Architecture. Neuveden: Springer, 2020, s. 125-137. ISBN 978-3-030-59154-0. Dostupné z: https://dx.doi.org/10.1007/978-3-030-59155-7_10.

VALENCIA, N.H., V. SRIVASTAV, Matej PIVOLUSKA, M. HUBER, N. FRIIS, W. MCCUTCHEON a M. MALIK. High-Dimensional Pixel Entanglement: Efficient Generation and Certification. QUANTUM. WIEN: VEREIN FORDERUNG OPEN ACCESS PUBLIZIERENS QUANTENWISSENSCHAF, 2020, roč. 4, December, s. 376-394. ISSN 2521-327X. Dostupné z: https://dx.doi.org/10.22331/q-2020-12-24-376.

SEHNAL, David, Radka SVOBODOVÁ, Karel BERKA, Alexander S. ROSE, Stephen K. BURLEY, Sameer VELANKAR a Jaroslav KOČA. High-performance macromolecular data delivery and visualization for the web. Acta Crystallographica Section D: Structural Biology. Chester: International Union of Crystallography, 2020, roč. 76, December 2020, s. 1167-1173. ISSN 2059-7983. Dostupné z: https://dx.doi.org/10.1107/S2059798320014515.

MACÁK, Martin, Matúš ŠTOVČIK, Barbora BÜHNOVÁ a Michal MERJAVÝ. How well a multi-model database performs against its single-model variants: Benchmarking OrientDB with Neo4j and MongoDB. Online. In Proceedings of the 2020 Federated Conference on Computer Science and Information Systems. New York: IEEE, 2020, s. 463-470. ISBN 978-83-955416-7-4. Dostupné z: https://dx.doi.org/10.15439/2020F76.

GABŁO, Natalia Anna, Karolína TRACHTOVÁ, Vladimír PROCHÁZKA, Jan HLAVSA, Tomáš GROLICH, Igor KISS, Josef SROVNAL, Alona REHULKOVA, Martin LOVECEK, Pavel SKALICKY, Ioana BERINDAN-NEAGOE, Zdeněk KALA a Ondřej SLABÝ. Identification and Validation of Circulating Micrornas as Prognostic Biomarkers in Pancreatic Ductal Adenocarcinoma Patients Undergoing Surgical Resection. Journal of Clinical Medicine. BASEL: MDPI, 2020, roč. 9, č. 8, s. 1-12. ISSN 2077-0383. Dostupné z: https://dx.doi.org/10.3390/jcm9082440.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. Improving Big Data Clustering for Jamming Detection in Smart Mobility. Online. In Proceedings of the 35th International Conference on ICT Systems Security and Privacy Protection - IFIP SEC. Maribor, Slovenia: Springer IFIP AICT series, 2020, s. 78-91. ISBN 978-3-030-58200-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-58201-2_6.

PERSIA, Fabio, Daniela D'AURIA a Mouzhi GE. Improving Learning System Performance with Multimedia Semantics. Online. In Proceedings of the 14th IEEE International Conference on Semantic Computing. San Diego, California, USA: IEEE, 2020, s. 238-241. ISBN 978-1-7281-6332-1. Dostupné z: https://dx.doi.org/10.1109/ICSC.2020.00050.

PERSIA, Fabio, Giovanni PILATO, Mouzhi GE, Paolo BOLZONI, Daniela D'AURIA a Helmer SVEN. Improving Orienteering-based Tourist Trip Planning with Social Sensing. Future Generation Computer Systems. Elsevier, 2020, roč. 110, č. 1, s. 931-945. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2019.10.028.

HRUBÁ, Marika. Library advocacy ve vysokoškolské knihovně. 2020.

MACHÁČKOVÁ, Táňa, Petra VYCHYTILOVÁ, Kamila SOUČKOVÁ, Karolína TRACHTOVÁ, Dominika BRCHNELOVÁ, Marek SVOBODA, Igor KISS, Vladimír PROCHÁZKA, Zdeněk KALA a Ondřej SLABÝ. MiR-215-5p Reduces Liver Metastasis in an Experimental Model of Colorectal Cancer through Regulation of ECM-Receptor Interactions and Focal Adhesion. Cancers. BASEL: MDPI, 2020, roč. 12, č. 12, s. 1-21. ISSN 2072-6694. Dostupné z: https://dx.doi.org/10.3390/cancers12123518.

WALLETZKÝ, Leonard, Luca CARRUBBO, Angeliki Maria TOLI, Mouzhi GE a Františka ROMANOVSKÁ. Multi-contextual View to Smart City Architecture. In AHFE Virtual Conference on the Human Side of Service Engineering. San Diego, United States: Springer, 2020, s. 306-312. ISBN 978-3-030-51056-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-51057-2_42.

FRIÁK, Martin, Dušan LAGO, Nikola KOUTNÁ, David HOLEC, Tomáš REBOK a Mojmír ŠOB. Multi-phase ELAStic Aggregates (MELASA) software tool for modeling anisotropic elastic properties of lamellar composites. Computer Physics Communications. Amsterdam: Elsevier, 2020, roč. 247, FEB 2020, s. 1-9. ISSN 0010-4655. Dostupné z: https://dx.doi.org/10.1016/j.cpc.2019.106863.

JELÍNEK, Kamil, Jan ŠLESINGER a Michal PROCHÁZKA. Právní aspekty sdílení dat v rámci informačních technologií konceptu Smart City v dopravě a jejich dopady do práva veřejných zakázek. 1. vyd. Brno: Masarykova univerzita, Právnická fakulta, 2020, 91 s. Edice Scientia, sv. 702. ISBN 978-80-210-9777-3.

DUDOVÁ, Zdenka, Dalibor VALÍK, Kristína GREPLOVÁ a Alice HÁLOVÁ. Představení BBMRI-CZ jako partnera pro výzkum v oblasti translační medicíny. In 41. Imunoanalytické dny 2020. 2020. ISBN 978-80-88120-28-5.

CIOROAICA, Emilia, Stanislav CHREN, Barbora BÜHNOVÁ, Thomas KUHN a Dimitar DIMTROV. Reference Architecture for Trust-Based Digital Ecosystems. Online. In 2020 IEEE International Conference on Software Architecture Companion (ICSA-C). Salvador; Brazil: IEEE Press, 2020, s. 266-273. ISBN 978-1-7281-7415-0. Dostupné z: https://dx.doi.org/10.1109/ICSA-C50368.2020.00051.

WALLETZKÝ, Leonard, Františka ROMANOVSKÁ, Angeliki Maria TOLI a Mouzhi GE. Research Challenges of Open Data as a Service for Smart Cities. Online. In Proceedings of the 10th International Conference on Cloud Computing and Services Science. Prague, Czech Republic: SCITEPRESS, 2020, s. 468-472. ISBN 978-989-758-424-4. Dostupné z: https://dx.doi.org/10.5220/0009578604680472.

AHMAD, Parwez, Marek SLÁVIK, Karolína TRACHTOVÁ, Natalia Anna GABŁO, Tomáš KAZDA, Dominik GURÍN, Pavel SMILEK, Zuzana HORÁKOVÁ, Břetislav GÁL, Markéta HERMANOVÁ, Pavel ŠLAMPA, Jiří ŠÁNA a Ondřej SLABÝ. Salivary microRNAs identified by small RNA sequencing as potential predictors of response to intensity-modulated radiotherapy in head and neck cancer patients. CELLULAR ONCOLOGY. DORDRECHT: SPRINGER, 2020, roč. 43, č. 3, s. 505-511. ISSN 2211-3428. Dostupné z: https://dx.doi.org/10.1007/s13402-020-00507-7.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Self-adaptive RFID Authentication for Internet of Things. In Proceedings of the 33rd International Conference on Advanced Information Networking and Applications (AINA-2019). Matsue, Japan: Springer, Advances in Intelligent Systems and Computing, 2020, s. 1094-1105. ISBN 978-3-030-15031-0. Dostupné z: https://dx.doi.org/10.1007/978-3-030-15032-7_92.

MAREK, Jiří. Seminář Open Science. 2020.

DRAGOICEA, Monica, Leonard WALLETZKÝ, Luca CARRUBBO, Nabil GEORGES BADR, Angeliki MARIA TOLI, Františka ROMANOVSKÁ a Mouzhi GE. Service Design for Resilience: A Multi-contextual Modeling Perspective. IEEE Access. IEEE, 2020, roč. 8, October, s. 185526-185543. ISSN 2169-3536. Dostupné z: https://dx.doi.org/10.1109/ACCESS.2020.3029320.

MACÁK, Martin, Agáta KRUŽÍKOVÁ, Lukáš DAUBNER a Barbora BÜHNOVÁ. Simulation Games Platform for Unintentional Perpetrator Attack Vector Identification. Online. In ICSEW'20: Proceedings of the IEEE/ACM 42nd International Conference on Software Engineering Workshops. New York, NY, USA: Association for Computing Machinery, 2020, s. 222-229. ISBN 978-1-4503-7963-2. Dostupné z: https://dx.doi.org/10.1145/3387940.3391475.

ROSSI, Bruno a Stanislav CHREN. Smart Grids Data Analysis: A Systematic Mapping Study. IEEE Transactions on Industrial Informatics. IEEE, 2020, roč. 16, č. 6, s. 3619-3639. ISSN 1551-3203. Dostupné z: https://dx.doi.org/10.1109/TII.2019.2954098.

SADLEK, Lukáš, Michal JAVORNÍK a Martin HUSÁK. Software pro podporu rozhodování při řešení bezpečnostního incidentu. 2020.

SCHINDLER, Ondřej, Tomáš RAČEK, Radka SVOBODOVÁ, Karel BERKA a Jaroslav KOČA. SQE charge calculation and its applicability for proteins. In ELIXIR CZ Annual Conference 2020. 2020. ISBN 978-80-86241-65-4.

MACÁK, Martin, Matúš ŠTOVČIK a Barbora BÜHNOVÁ. The Suitability of Graph Databases for Big Data Analysis: A Benchmark. Online. In Proceedings of the 5th International Conference on Internet of Things, Big Data and Security - Volume 1: IoTBDS. Neuveden: SciTePress, 2020, s. 213-220. ISBN 978-989-758-426-8. Dostupné z: https://dx.doi.org/10.5220/0009350902130220.

MACÁK, Martin, Ivan VANÁT, Michal MERJAVÝ, Tomáš JEVOČIN a Barbora BÜHNOVÁ. Towards Process Mining Utilization in Insider Threat Detection from Audit Logs. Online. In 2020 Seventh International Conference on Social Networks Analysis, Management and Security (SNAMS). New York: IEEE, 2020, s. 250-255. ISBN 978-0-7381-1180-3. Dostupné z: https://dx.doi.org/10.1109/SNAMS52053.2020.9336573.

DAUBNER, Lukáš, Martin MACÁK, Barbora BÜHNOVÁ a Tomáš PITNER. Towards verifiable evidence generation in forensic-ready systems. Online. In 2020 IEEE International Conference on Big Data (Big Data). Atlanta, United States: IEEE, 2020, s. 2264-2269. ISBN 978-1-7281-6251-5. Dostupné z: https://dx.doi.org/10.1109/BigData50022.2020.9378035.

MACHÁČKOVÁ, Táňa, Karolína TRACHTOVÁ, Vladimír PROCHÁZKA, Tomáš GROLICH, Martina FARKAŠOVÁ, Lukáš FIALA, Roman ŠEFR, Igor KISS, Matej SKROVINA, Michal DOSOUDIL, Ioana BERINDAN-NEAGOE, Marek SVOBODA, Ondřej SLABÝ a Zdeněk KALA. Tumor microRNAs Identified by Small RNA Sequencing as Potential Response Predictors in Locally Advanced Rectal Cancer Patients Treated With Neoadjuvant Chemoradiotherapy. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2020, roč. 17, č. 3, s. 249-257. ISSN 1109-6535. Dostupné z: https://dx.doi.org/10.21873/cgp.20185.

HRUBÁ, Marika. Úvod do library advocacy pro veřejné knihovny : e-learningový kurz. Online. 2020.

DAUBNER, Lukáš, Martin MACÁK, Barbora BÜHNOVÁ a Tomáš PITNER. Verification of Forensic Readiness in Software Development: A Roadmap. Online. In Proceedings of the 35th Annual ACM Symposium on Applied Computing. New York, NY, USA: Association for Computing Machinery, 2020, s. 1658-1661. ISBN 978-1-4503-6866-7. Dostupné z: https://dx.doi.org/10.1145/3341105.3374094.

SEHNAL, David, Radka SVOBODOVÁ, K. BERKA, Lukáš PRAVDA, Adam MIDLIK a Jaroslav KOČA. Visualization and Analysis of Protein Structures with LiteMol Suite. Online. In STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS. TOTOWA: HUMANA PRESS INC, 2020, s. 1-13. 2112. ISBN 978-1-0716-0270-6. Dostupné z: https://dx.doi.org/10.1007/978-1-0716-0270-6_1.

VODÁK, Rostislav, Michal BÍL, Tomáš SVOBODA, Zuzana KŘIVÁNKOVÁ, Jan KUBEČEK, Tomáš REBOK a Petr HLINĚNÝ. A deterministic approach for rapid identification of the critical links in networks. PLOS ONE. United States: Public Library of Science, 2019, roč. 14, č. 7, s. 1-18. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0219658.

STŘELÁK, David, Carlos Óscar S. SORZANO, José María CARAZO a Jiří FILIPOVIČ. A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. The International Journal of High Performance Computing Applications. SAGE Publishing, 2019, roč. 33, č. 5, s. 948-959. ISSN 1094-3420. Dostupné z: https://dx.doi.org/10.1177/1094342019832958.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. A Research Roadmap of Big Data Clustering Algorithms for Future Internet of Things. International Journal of Organizational and Collective Intelligence. IGI, 2019, roč. 9, č. 2, s. 16-30. ISSN 1947-9344. Dostupné z: https://dx.doi.org/10.4018/IJOCI.2019040102.

GE, Mouzhi, Fabio PERSIA a Daniela D'AURIA. Advanced Recommender Systems by Exploiting Social Networks. In Proceedings of the IEEE International Conference on Humanized Computing and Communication. Laguna Hills, CA, USA: IEEE, 2019, s. 118-125. ISBN 978-1-72814-125-1. Dostupné z: https://dx.doi.org/10.1109/HCC46620.2019.00025.

QISHAN, Yang, Mouzhi GE a Markus HELFERT. Analysis of Data Warehouse Architectures: Modeling and Classification. In Proceedings of the 21st International Conference on Enterprise Information Systems. Crete, Greece: SciTePress, 2019, s. 604-611. ISBN 978-989-758-372-8. Dostupné z: https://dx.doi.org/10.5220/0007728006040611.

SMRČKA, Martin, Alena KOPKOVÁ, Jiří ŠÁNA, Marek VEČEŘA, J OPPELT, Karolína TRACHTOVÁ, R JANČÁLEK, Pavel FADRUS a Ondřej SLABÝ. Analysis of microRNA levels in cerebrospinal fluid of patients with primary brain tumors and metastases. In 2019 WFNS Special World Congress, 9. – 12. 9. 2019, Peking, Čína. 2019.

BÜHNOVÁ, Barbora, Lucie JURYSTOVÁ a Dita PŘIKRYLOVÁ. Assisting women in career change towards software engineering: experience from Czechitas NGO. Online. In Proceedings of the 13th European Conference on Software Architecture - Volume 2. New York, NY, USA: ACM, 2019, s. 88-93. ISBN 978-1-4503-7142-1. Dostupné z: https://dx.doi.org/10.1145/3344948.3344967.

RAČEK, Tomáš, Ondřej SCHINDLER, Vladimír HORSKÝ, Jaroslav KOČA, Dominik TOUŠEK a Radka SVOBODOVÁ VAŘEKOVÁ. AtomicChargeCalculator II. In ELIXIR CZ Annual Conference 2019. 2019. ISBN 978-80-86241-61-6.

REBOK, Tomáš. Big Data - overview, basic concepts and practical use in research. In Alliance4Life 5th project meeting. 2019.

LIPČÁK, Peter, Martin MACÁK a Bruno ROSSI. Big Data Platform for Smart Grids Power Consumption Anomaly Detection. Online. In Proceedings of the 2019 Federated Conference on Computer Science and Information Systems. New York: IEEE, 2019, s. 771-780. ISBN 978-1-5386-8005-6. Dostupné z: https://dx.doi.org/10.15439/2019F210.

MÍČ, Vladimír, David NOVÁK a Pavel ZEZULA. Binary Sketches for Secondary Filtering. ACM Transactions on Information Systems. New York: ACM Press, 2019, roč. 37, č. 1, s. "1:1"-"1:28", 28 s. ISSN 1046-8188. Dostupné z: https://dx.doi.org/10.1145/3231936.

ANTOL, Matej a Vlastislav DOHNAL. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 23th East European Conference, ADBIS 2019. LNCS 11695. Cham: Springer International Publishing, 2019, s. 337-353. ISBN 978-3-030-28729-0. Dostupné z: https://dx.doi.org/10.1007/978-3-030-28730-6_21.

ŠTOURAČ, Jan, O. VAVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, Gabriela Filipa FONSECA PINTO, Andrea SCHENKMAYEROVÁ, Jiří DAMBORSKÝ a David BEDNÁŘ. Caver web: identification of tunnels and channels in proteins and analysis of ligand transport. In European Biotechnology Congress. 2019. ISSN 0168-1656. Dostupné z: https://dx.doi.org/10.1016/j.jbiotec.2019.05.251.

ŠTOURAČ, Jan, Ondřej VÁVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Jan BREZOVSKÝ, Jiří DAMBORSKÝ a David BEDNÁŘ. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic acids research. Oxford: Oxford University Press, 2019, roč. 47, W1, s. 414-422. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkz378.

VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, roč. 35, č. 23, s. 4986-4993. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btz386.

KOPKOVÁ, Alena, Jiří ŠÁNA, Táňa MACHÁČKOVÁ, Marek VEČEŘA, Lenka RADOVÁ, Karolína TRACHTOVÁ, Václav VYBÍHAL, Martin SMRČKA, Tomáš KAZDA, Ondřej SLABÝ a Pavel FADRUS. Cerebrospinal Fluid MicroRNA Signatures as Diagnostic Biomarkers in Brain Tumors. Cancers. BASEL: MDPI, 2019, roč. 11, č. 10, s. 1-12. ISSN 2072-6694. Dostupné z: https://dx.doi.org/10.3390/cancers11101546.

GE, Mouzhi, Stanislav CHREN, Bruno ROSSI a Tomáš PITNER. Data Quality Management Framework for Smart Grid Systems. Online. In Abramowicz W., Corchuelo R. Proceedings of the 22nd International Conference on Business Information Systems. Switzerland: Springer, 2019, s. 299-310. ISBN 978-3-030-20481-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-20482-2_24.

JAVORNÍK, Michal, Jana KOMÁRKOVÁ a Martin HUSÁK. Decision Support for Mission-Centric Cyber Defence. Online. In Proceedings of the 14th International Conference on Availability, Reliability and Security (ARES 2019). New York: ACM, 2019, s. "34:1"-"34:8", 8 s. ISBN 978-1-4503-7164-3. Dostupné z: https://dx.doi.org/10.1145/3339252.3340522.

CAPUTO, Francesco, Vincenzo FORMISANO, Barbora BÜHNOVÁ a Leonard WALLETZKÝ. Depicting a Conceptual Framework for Smart City. World Review of Entrepreneurship, Management and Sustainable Development. Inderscience Publishers (IEL), 2019, roč. 15, č. 3, s. 379-392. ISSN 1746-0573. Dostupné z: https://dx.doi.org/10.1504/WREMSD.2019.099418.

GEŠVINDR, David, Barbora BÜHNOVÁ a Jaroslav DAVÍDEK. Design of Scalable and Resilient Applications using Microservice Architecture in PaaS Cloud. Online. In Proceedings of the 14th International Conference on Software Technologies - Volume 1: ICSOFT. Neuveden: SciTePress, 2019, s. 619-630. ISBN 978-989-758-379-7. Dostupné z: https://dx.doi.org/10.5220/0007842906190630.

CIOROAICA, Emilia, Thomas KUHN a Barbora BÜHNOVÁ. (Do not) trust in ecosystems. Online. In Proceedings of the 41st International Conference on Software Engineering: New Ideas and Emerging Results. USA: IEEE Press, 2019, s. 9-12. ISBN 978-1-72811-758-4. Dostupné z: https://dx.doi.org/10.1109/ICSE-NIER.2019.00011.

OĽHA, Jaroslav, Jana HOZZOVÁ, Jan FOUSEK a Jiří FILIPOVIČ. Exploiting historical data: pruning autotuning spaces and estimating the number of tuning steps. In Ulrich Schwardmann, Christian Boehme, Dora B. Heras, Valeria Cardellini, Emmanuel Jeannot, Antonio Salis, Claudio Schifanella, Ravi Reddy Manumachu, Dieter Schwamborn, Laura Ricci, Oh Sangyoon, Thomas Gruber, Laura Antonelli, Stephen L. Scott. Lecture Notes in Computer Science. Cham, Switzerland: Springer, Cham, 2019, s. 295-307. ISBN 978-3-030-48339-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-48340-1_23.

D'AURIA, Daniela, Mouzhi GE a Fabio PERSIA. Exploiting Recommender Systems in Collaborative Healthcare. In Proceedings of the 16th International Symposium on Pervasive Systems, Algorithms and Networks. Naples, Italy: Springer Communications in Computer and Information Science, 2019, s. 71-82. ISBN 978-3-030-30142-2. Dostupné z: https://dx.doi.org/10.1007/978-3-030-30143-9_6.

WALLETZKÝ, Leonard, Luca CARRUBBO a Mouzhi GE. Exploring complex service design: Understanding the Diamonds of Context. Online. In Francesco Polese. Online Proceedings of Naples Forum on Service. Italy: University of Salerno, 2019.

GE, Mouzhi a Fabio PERSIA. Factoring Personalization in Social Media Recommendations. In Proceedings of the 13th IEEE International Conference on Semantic Computing. California, USA: IEEE, 2019, s. 344-347. ISBN 978-1-5386-6783-5. Dostupné z: https://dx.doi.org/10.1109/ICOSC.2019.8665624.

RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Jiří FILIPOVIČ, Jan ŠTOURAČ, David BEDNÁŘ a Jiří DAMBORSKÝ. Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock. FRONTIERS IN CHEMISTRY. LAUSANNE: FRONTIERS MEDIA SA, 2019, roč. 7, OCT 29 2019, s. 1-14. ISSN 2296-2646. Dostupné z: https://dx.doi.org/10.3389/fchem.2019.00709.

CHREN, Stanislav, Bruno ROSSI, Barbora BÜHNOVÁ, Mouzhi GE a Tomáš PITNER. Industrial Involvement In Information System Education: Lessons Learned from a Software Quality Course. Online. In Proceedings of 28th International Conference on Information Systems Development. Toulon, France: AIS, 2019, s. 1-12. ISBN 978-2-9571876-0-7.

SAUNDERS, Gary, Michael BAUDIS, Regina BECKER, Sergi BELTRAN, Christophe BÉROUD, Ewan BIRNEY, Cath BROOKSBANK, Søren BRUNAK, Marc Van den BULCKE, Rachel DRYSDALE, Salvador CAPELLA-GUTIERREZ, Paul FLICEK, Francesco FLORINDI, Peter GOODHAND, Ivo GUT, Jaap HERINGA, Petr HOLUB, Jef HOOYBERGHS, Nick JUTY, Thomas M KEANE, Jan O KORBEL, Ilkka LAPPALAINEN, Brane LESKOSEK, Gert MATTHIJS, Michaela Th MAYRHOFER, Andres METSPALU, Arcadi NAVARRO, Steven NEWHOUSE, Tommi NYRÖNEN, Angela PAGE, Bengt PERSSON, Aarno PALOTIE, Helen PARKINSON, Jordi RAMBLA, David SALGADO, Erik STEINFELDER, Morris A SWERTZ, Alfonso VALENCIA, Susheel VARMA, Niklas BLOMBERG a Serena SCOLLEN. Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews Genetics. 2019, roč. 20, č. 11, s. 692-701, 9 s. ISSN 1471-0056. Dostupné z: https://dx.doi.org/10.1038/s41576-019-0156-9.

HRUBÁ, Marika. Library advocacy– efektivní prosazování zájmů knihoven : představení e-learningového kurzu „Úvod do library advocacy pro veřejné knihovny". Praha: Sdružení knihoven ČR, 2019.

RŮŽIČKA, Michal, Andrea MIRANDA, Lukáš HEJTMÁNEK, Zdeněk VAŠEK, Vlastimil KREJČÍŘ a Miroslav BARTOŠEK. Metodika bitové ochrany digitálních dat. 2019.

VADICAMO, Lucia, Vladimír MÍČ, Falchi FABRIZIO a Pavel ZEZULA. Metric Embedding into the Hamming Space with the n-Simplex Projection. In Giuseppe Amato, Claudio Gennaro, Vincent Oria, Milos Radovanovic. Similarity Search and Applications: 12th International Conference, SISAP 2019, Newark, New Jersey, USA, October 2-4, 2019, Proceedings. Cham: Springer International Publishing, 2019, s. 265-272. ISBN 978-3-030-32046-1. Dostupné z: https://dx.doi.org/10.1007/978-3-030-32047-8_23.

CHREN, Stanislav, Barbora BÜHNOVÁ, Martin MACÁK, Lukáš DAUBNER a Bruno ROSSI. Mistakes in UML Diagrams: Analysis of Student Projects in a Software Engineering Course. Online. In Sarah Beecham, Daniela Damian. Proceedings of the 41st International Conference on Software Engineering: Software Engineering Education and Training. Piscataway, NJ, USA: IEEE Press, 2019, s. 100-109. ISBN 978-1-7281-1000-4. Dostupné z: https://dx.doi.org/10.1109/ICSE-SEET.2019.00019.

WALLETZKÝ, Leonard, Luca CARUBBO a Mouzhi GE. Modelling Service Design and Complexity for Multi-contextual Applications in Smart Cities. Online. In 2019 23rd International Conference on System Theory, Control and Computing (ICSTCC). Sinaia, Romania: IEEE, 2019, s. 101-106. ISBN 978-1-7281-0699-1. Dostupné z: https://dx.doi.org/10.1109/ICSTCC.2019.8885800.

BLAŽEK, Pavel, Petr KOVÁCS, David MIKSTEIN, Jitka SPURNÁ a Jan TAJOVSKÝ. MUNI 100 — Příběh GISu. Online. In Sborník příspěvků 28. konference GIS ESRI. 2019. vyd. Praha: ARCDATA PRAHA, s.r.o., 2019, s. 39-42. ISBN 978-80-905316-7-3.

ČELEDA, Pavel, Jakub ČEGAN, Martin DRAŠAR, Ivo NUTÁR, Jiří RÁJA, Tomáš REBOK, Andrej TOMČI a Daniel TOVARŇÁK. Nástroje pro ověřování bezpečnosti SW/HW a simulaci útoků na prvky kritické informační infrastruktury. 2019.

GEŠVINDR, David, Ondřej GASIOR a Barbora BÜHNOVÁ. PaaSArch Cloud Prototyper Tool. 2019.

GEŠVINDR, David a Barbora BÜHNOVÁ. PaaSArch: Quality Evaluation Tool for PaaS Cloud Applications Using Generated Prototypes. Online. In 2019 IEEE International Conference on Software Architecture Companion (ICSA-C). Neuveden: IEEE, 2019, s. 170-173. ISBN 978-1-7281-1876-5. Dostupné z: https://dx.doi.org/10.1109/ICSA-C.2019.00038.

MATE, Sebastian, Marvin KAMPF, Wolfgang RÖDLE, Stefan KRAUS, Rumyana PROYNOVA, Kaisa SILANDER, Lars EBERT, Martin LABLANS, Christina SCHÜTTLER, Christian KNELL, Niina EKLUND, Michael HUMMEL, Petr HOLUB a Hans-Ulrich PROKOSCH. Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC. Appl Clin Inform. 2019, roč. 10, č. 04, s. 679-692. Dostupné z: https://dx.doi.org/10.1055/s-0039-1695793.

SCHINDLER, Ondřej, Tomáš RAČEK, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. Partial atomic charges for proteins. In ELIXIR CZ Annual Conference 2019. 2019. ISBN 978-80-86241-61-6.

PETERS, K, J BRADBURY, S BERGMANN, M CAPUCCINI, M CASCANTE, Atauri P DE, TMD EBBELS, C FOGUET, R GLEN, A GONZALEZ-BELTRAN, UL GUNTHER, E HANDAKAS, T HANKEMEIER, K HAUG, S HERMAN, Petr HOLUB, M IZZO, D JACOB, D JOHNSON, F JOURDAN, N KALE, I KARAMAN, B KHALILI, PE KHONSARI, K KULTIMA, S LAMPA, A LARSSON, C LUDWIG, P MORENO, S NEUMANN, JA NOVELLA, O Donovan C, JTM PEARCE, A PELUSO, ME PIRAS, L PIREDDU, MAC REED, P ROCCA-SERRA, P ROGER, A ROSATO, R RUEEDI, C RUTTKIES, N SADAWI, RM SALEK, SA SANSONE, V SELIVANOV, O SPJUTH, D SCHOBER, EA THEVENOT, M TOMASONI, M VAN RIJSWIJK, M VAN VLIET, MR VIANT, RJM WEBER, G ZANETTI a C STEINBECK. PhenoMeNal: processing and analysis of metabolomics data in the cloud. GIGASCIENCE. OXFORD: OXFORD UNIV PRESS, 2019, roč. 8, č. 2, 12 s. ISSN 2047-217X. Dostupné z: https://dx.doi.org/10.1093/gigascience/giy149.

HRUBÁ, Marika. Pozvání do kurzu Úvod do library advocacy pro veřejné knihovny. Duha. Brno: Moravská zemská knihovna, 2019, roč. 33, č. 4, s. 30-31. ISSN 0862-1985.

LHOTÁK, Martin, Zdeněk VAŠEK a Michal RŮŽIČKA. Projekt ARCLib – vývoj open-source řešení pro dlouhodobou archivaci digitálních dokumentů pro knihovny a další paměťové instituce – aktuální stav. In LTP 2019: Nové trendy a východiská pri budovaní LTP archívov: zborník príspevkov zo 4. medzinárodnej konferencie o dlhodobej archivácii. Bratislava: Univerzitná knižnica v Bratislave, 2019, s. 53-63. ISBN 978-80-89303-77-9.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. Quality Management for Big 3D Data Analytics: A Case Study of Protein Data Bank. Online. In Proceedings of the 4th International Conference on Internet of Things, Big Data and Security - Volume 1. Crete, Greece: SciTePress, 2019, s. 286-293. ISBN 978-989-758-369-8. Dostupné z: https://dx.doi.org/10.5220/0007717402860293.

LAMBA, Vikas, Nikola ŠIMKOVÁ a Bruno ROSSI. Recommendations for Smart Grid Security Risk Management. Cyber-Physical Systems. Taylor & Francis, 2019, roč. 5, č. 2, s. 92-118. ISSN 2333-5785. Dostupné z: https://dx.doi.org/10.1080/23335777.2019.1600035.

TRANG, Le Hong, Hind BANGUI, Mouzhi GE a Barbora BÜHNOVÁ. Scaling Big Data Applications in Smart City with Coresets. Online. In Proceedings of the 8th International Conference on Data Science, Technology and Applications - Volume 1. Prague, Czech Republic: SciTePress, 2019, s. 357-363. ISBN 978-989-758-377-3. Dostupné z: https://dx.doi.org/10.5220/0007958803570363.

HRABOVSKÁ, Katarína, Nikola ŠIMKOVÁ, Bruno ROSSI a Tomáš PITNER. Smart Grids and Software Testing Process Models. Online. In Ruzicka, J. 2019 Smart City Symposium Prague (SCSP). New York: IEEE, 2019, s. 1-6. ISBN 978-1-72810-497-3. Dostupné z: https://dx.doi.org/10.1109/SCSP.2019.8805718.

ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Michal BERAN, František HRDINA, Tomáš JIRSÍK, Daniel KOUŘIL, Michal MAZOUREK, Radek OŠLEJŠEK, Michal PROCHÁZKA, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Vadim JANOVSKIJ a Kristína ZÁKOPČANOVÁ. Software pro detekci a analýzu napadení KII. 2019.

ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Milan ČERMÁK, Jan DUDA, Vlastimil HOLER, Ľuboš HYŽÁK, Boris JADUŠ, Jakub KADAŠI, David LEŠKA, Martin MACHÁČ, Ivo NUTÁR, Radek OŠLEJŠEK, Dominik PILÁR, Tomáš PLESNÍK, Michal PROCHÁZKA, Tomáš REBOK, Vít RUSŇÁK, Miloslav STANĚK, Pavel ŠEDA, Valdemar ŠVÁBENSKÝ, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Jan VYKOPAL a Tatiana ZBONČÁKOVÁ. Software pro simulaci obecných i kritických informačních infrastruktur. 2019.

CHREN, Stanislav, Radoslav MIČKO, Barbora BÜHNOVÁ a Bruno ROSSI. STRAIT: A Tool for Automated Software Reliability Growth Analysis. Online. In Margaret-Anne Storey. Proceedings of the 16th International Conference on Mining Software Repositories. Piscataway, NJ, USA: ACM, 2019, s. 105-110. ISBN 978-1-7281-3412-3. Dostupné z: https://dx.doi.org/10.1109/MSR.2019.00025.

ISON, Jon, Hans IENASESCU, Piotr CHMURA, Emil RYDZA, Hervé MÉNAGER, Matúš KALAŠ, Veit SCHWÄMMLE, Björn GRÜNING, Niall BEARD, Rodrigo LOPEZ, Severine DUVAUD, Heinz STOCKINGER, Bengt PERSSON, Radka SVOBODOVÁ VAŘEKOVÁ, Tomáš RAČEK, Jiří VONDRÁŠEK, Hedi PETERSON, Ahto SALUMETS, Inge JONASSEN, Rob HOOFT, Tommi NYRÖNEN, Alfonso VALENCIA, Salvador CAPELLA, Josep GELPÍ, Federico ZAMBELLI, Babis SAVAKIS, Brane LESKOŠEK, Kristoffer RAPACKI, Christophe BLANCHET, Rafael JIMENEZ, Arlindo OLIVEIRA, Gert VRIEND, Olivier COLLIN, Jacques van HELDEN, Peter LØNGREEN a Søren BRUNAK. The bio.tools registry of software tools and data resources for the life sciences. GENOME BIOLOGY. LONDON: BIOMED CENTRAL LTD, 2019, roč. 20, č. 164, s. 1-4. ISSN 1474-760X. Dostupné z: https://dx.doi.org/10.1186/s13059-019-1772-6.

ŠTEFANKO, Martin, Ondřej CHALOUPKA a Bruno ROSSI. The Saga Pattern in a Reactive Microservices Environment. Online. In Marten van Sinderen and Leszek Maciaszek. 14th International Conference on Software Technologies (ICSOFT 2019). Prague: SciTePress, 2019, s. 483-490. ISBN 978-989-758-379-7. Dostupné z: https://dx.doi.org/10.5220/0007918704830490.

MAŠKA, Martin, Tereza NEČASOVÁ, David WIESNER, Dmitry SOROKIN, Igor PETERLÍK, Vladimír ULMAN a David SVOBODA. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. Online. In 26th IEEE International Conference on Image Processing. Taipei: IEEE, 2019, s. 819-823. ISBN 978-1-5386-6249-6. Dostupné z: https://dx.doi.org/10.1109/ICIP.2019.8803721.

CIOROAICA, Emilia, Stanislav CHREN, Thomas KUHN, Barbora BÜHNOVÁ a Dimitar DIMITROV. Towards Creation of a Reference Architecture for Trust-Based Digital Ecosystems. In Proceedings of European Conference on Software Architecture (ECSA 2019) Workshops. Paris, France: ACM, 2019, s. 273-276. ISBN 978-1-4503-7142-1. Dostupné z: https://dx.doi.org/10.1145/3344948.3344973.

MORRIS, Chris, Paolo ANDREETTO, Lucia BANCI, Alexandre M J J BONVIN, Grzegorz CHOJNOWSKI, Laura del CANO, José Marıa CARAZO, Pablo CONESA, Susan DAENKE, George DAMASKOS, Andrea GIACHETTI, Natalie E C HALEY, Maarten L HEKKELMAN, Philipp HEUSER, Robbie P JOOSTEN, Daniel KOUŘIL, Aleš KŘENEK, Tomáš KULHÁNEK, Victor S LAMZIN, Nurul NADZIRIN, Anastassis PERRAKIS, Antonio ROSATO, Fiona SANDERSON, Joan SEGURA, Joerg SCHAARSCHMIDT, Egor SOBOLEV, Sergio TRALDI, Mikael E TRELLET, Sameer VELANKAR, Marco VERLATO a Martyn WINN. West-Life: A Virtual Research Environment for structural biology. Journal of Structural Biology: X. 2019, roč. 1, January - March 2019, s. 1-8. ISSN 2590-1524. Dostupné z: https://dx.doi.org/10.1016/j.yjsbx.2019.100006.

BÜHNOVÁ, Barbora a Dita PŘIKRYLOVÁ. Women Want to Learn Tech: Lessons from the Czechitas Education Project. Online. In Proceedings of the 2nd International Workshop on Gender Equality in Software Engineering. USA: IEEE Press, 2019, s. 25-28. ISBN 978-1-72812-245-8. Dostupné z: https://dx.doi.org/10.1109/GE.2019.00013.

GE, Mouzhi a Fabio PERSIA. A Generalized Evaluation Framework for Multimedia Recommender Systems. International Journal of Semantic Computing. World Scientific, 2018, roč. 12, č. 4, s. 541-557. ISSN 1793-351X. Dostupné z: https://dx.doi.org/10.1142/S1793351X18500046.

LIPČÁK, Jakub a Bruno ROSSI. A Large-Scale Study on Source Code Reviewer Recommendation. Online. In 44th Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2018. Not specified: IEEE, 2018, s. 378-387. ISBN 978-1-5386-7383-6. Dostupné z: https://dx.doi.org/10.1109/SEAA.2018.00068.

PAZÚRIKOVÁ, Jana, Jaroslav OĽHA, Aleš KŘENEK a Vojtěch SPIWOK. Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations. arXiv, 2018, 22 s. arXiv:1801.02362.

KIŠŠ, Filip a Bruno ROSSI. Agile to Lean Software Development Transformation: A Systematic Literature Review. Online. In 2018 Federated Conference on Computer Science and Information Systems (FedCSIS). Not specified: IEEE, 2018, s. 969-973. ISBN 978-83-949419-5-6. Dostupné z: https://dx.doi.org/10.15439/2018F53.

GE, Mouzhi, Hind BANGUI a Barbora BÜHNOVÁ. Big Data for Internet of Things: A Survey. Future Generation Computer Systems. Elsevier, 2018, roč. 87, č. 1, s. 601-614. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2018.04.053.

TRACHTOVÁ, Karolína, Jan OPPELT, Kateřina AMRUZ ČERNÁ a Marek MRÁZ. Bioinformatic analysis of microRNAs and long non-coding RNAs in malignant B cells. In RNA and Disease, Uppsala, Sweden. 2018.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Dan POLANSKÝ, Karel BERKA a Jaroslav KOČA. bio.tools Sum – tool for exploration of summary information about bioinformatics services in bio.tools. In F1000Research. 2018. Dostupné z: https://dx.doi.org/10.7490/f1000research.1115564.1.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. CCL - Charge Calculation Language. In ELIXIR CZ Annual Conference 2018. 2018. ISBN 978-80-86241-60-9.

LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA a Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, roč. 7, č. 2018, s. 1-16. ISSN 2046-1402. Dostupné z: https://dx.doi.org/10.12688/f1000research.15161.1.

KNÍŽEK, Jiří, Lubomír PAVLIŠKA, Václav PROCHÁZKA, Adéla VRTKOVÁ, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL a Martin KUBA. Computation of Identification of a Gnostical Regression Model, Robust to Both Input and Output Disturbances with the Help of Parallel Computing–Basic Version. International Journal of Mathematics and Computation™. CESER, 2018, roč. 29, č. 2, s. 29-58. ISSN 0974-5718.

SUCHÁNKOVÁ, Pavla a Radka SVOBODOVÁ VAŘEKOVÁ. Connection of glycoinformatics databases with Pubchem. In ENBIK. 2018. ISBN 978-80-7592-017-1.

STŘELÁK, David a Jiří FILIPOVIČ. cuFFTAdvisor. 2018.

MINISTR, Jan, Tomáš PITNER a Nikola ŠIMKOVÁ. Cybersecurity Qualifications. Online. In Ministr Jan, Tvrdíková Milena. Proceedings of the 21st International Conference on Information Technology for Practice. Ostrava: VŠB-Technical University of Ostrava, 2018, s. 141-146. ISBN 978-80-248-4196-0.

YANG, Qishan, Mouzhi GE a Markus HELFERT. Data Quality Problems in TPC-DI Based Data Integration Processes. Online. In Enterprise Information Systems. Germany: Springer Lecture Notes in Business Information Processing, 2018, s. 57-73. 321. ISBN 978-3-319-93374-0. Dostupné z: https://dx.doi.org/10.1007/978-3-319-93375-7_4.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Dynamic Reconfiguration in Multigroup Multicast Routing under Uncertainty. Journal of Heuristics. Springer, 2018, roč. 24, č. 3, s. 395-423. ISSN 1381-1231. Dostupné z: https://dx.doi.org/10.1007/s10732-017-9339-8.

FOUSEK, Jan. Efficient sparse matrix-delayed vector multiplication for discretized neural field model. The Journal of Supercomputing. Springer US, 2018, roč. 74, č. 5, s. 1863-1884. ISSN 0920-8542. Dostupné z: https://dx.doi.org/10.1007/s11227-017-2194-4.

RAČEK, Tomáš, Ondřej SCHINDLER, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. Empirical methods for calculation of partial atomic charges – applicability for proteins? In ENBIK2018. 2018. ISBN 978-80-7592-017-1.

HOLUB, Petr, Florian KOHLMAYER, Fabian PRASSER, Michaela Theresia MAYRHOFER, Irene SCHLUNDER, Gillian M. MARTIN, Sara CASATI, Lefteris KOUMAKIS, Andrea WUTTE, Lukas KOZERA, Dominik STRAPAGIEL, Gabriele ANTON, Gianluigi ZANETTI, Osman Ugur SEZERMAN, Maimuna MENDY, Dalibor VALÍK, Marialuisa LAVITRANO, Georges DAGHER, Kurt ZATLOUKAL, GertJan B. VAN OMMEN a Jan-Eric LITTON. Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2018, roč. 16, č. 2, s. 97-105. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2017.0110.

GE, Mouzhi a Fabio PERSIA. Evaluation in Multimedia Recommender Systems: A Practical Guide. In Proceedings of the 12th IEEE International Conference on Semantic Computing. California, USA: IEEE, 2018, s. 294-297. ISBN 978-1-5386-4407-2. Dostupné z: https://dx.doi.org/10.1109/ICSC.2018.00050.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. Exploring Big Data Clustering Algorithms for Internet of Things Applications. Online. In Proceedings of the 3rd International Conference on Internet of Things, Big Data and Security. Madeira, Portugal: SCITEPRESS, 2018, s. 269-276. ISBN 978-989-758-296-7. Dostupné z: https://dx.doi.org/10.5220/0006773402690276.

PERSIA, Fabio, Mouzhi GE a Daniela D'AURIA. How to exploit Recommender Systems in Social Media. Online. In Proceedings of the IEEE 19th International Conference on Information Reuse and Integration for Data Science. Salt Lake City: IEEE, 2018, s. 537-541. ISBN 978-1-5386-2659-7. Dostupné z: https://dx.doi.org/10.1109/IRI.2018.00085.

KREJČÍŘ, Vlastimil. Indexování a vyhledávání matematických formulí. Online. Praha: Albertina icome Praha, 2018, 6 s. ISSN 1801-2213.

SALOMONI, Davide, Luciano GAIDO, Isabel Campos PLASENCIA, Jesus E Marco de LUCAS, Peter SOLAGNA, Jorge GOMES, Luděk MATYSKA, P FUHRMAN, Marcus HARDT, Giacinto DONVITO, L DUTKA, Marcin Pl o CIENNIK, Roberto BARBERA, Cristina AIFTIMIEI, Ignacio BLANQUER, Andrea CECCANTI, Mario DAVID, Alvaro Lopez GARCIA, German MOLTO, P ORVIZ, Zdeněk SUSTR, M VILJOEN, Fernando AGUILAR, L ALVES, Alexandre BONVING, Riccardo BRUNO, D DAVIDOVIC, Marco FARGETTA, Yen CHEN, Sandro FIORE, Z KURKCUOGLU, L LLORET, J MARTINS, Alessandra NUZZO, Paola NASSISI, J PINA, Eva SCIACCA, Daniele SPIGA, M TANGARO, Michal URBANIAK, Bas WEGH a T ZOK. INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures. Journal of Grid Computing. Springer Science+Business Media B.V., 2018, roč. 16, č. 3, s. 381-408. ISSN 1570-7873. Dostupné z: https://dx.doi.org/10.1007/s10723-018-9453-3.

PITNER, Tomáš, Jan MINISTR, Jan TOMÁŠEK, Martin LHOTÁK a Vyacheslav CHAPLYHA. Innovation of the Information System in the Field of Data Archiving. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 26th Interdisciplinary Information Management Talks (IDIMT) 2018 Strategic Modeling in Management, Economy and Society. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2018, s. 127-135. ISBN 978-3-99062-339-8.

CAPUTO, Francesco, Barbora BÜHNOVÁ a Leonard WALLETZKÝ. Investigating the role of smartness for sustainability: Insights from the Smart Grid domain. Sustainability Science. Tokyo: Springer, 2018, roč. 13, č. 5, s. 1299-1309. ISSN 1862-4065. Dostupné z: https://dx.doi.org/10.1007/s11625-018-0555-4.

PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK a Jana PAZÚRIKOVÁ. Kernel Tuning Toolkit. 2018.

PIVOLUSKA, Matej, Marcus HUBER a Mehul MALIK. Layered quantum key distribution. Physical Review A. 2018, roč. 97, č. 3, s. "032312:1"-"032312:10", 10 s. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.97.032312.

PLESCH, Martin a Matej PIVOLUSKA. Loss of information in quantum guessing game. New Journal of Physics. IOP publishing, 2018, roč. 20, 07 02 2018, s. "023018:1"-"023018:10", 10 s. ISSN 1367-2630. Dostupné z: https://dx.doi.org/10.1088/1367-2630/aaa5f8.

BAVARESCO, Jessica, Natalia Herrera VALENCIA, Claude KLÖCKL, Matej PIVOLUSKA, Paul ERKER, Nicolai FRIIS, Mehul MALIK a Marcus HUBER. Measurements in two bases are sufficient for certifying high-dimensional entanglement. Nature Physics. Nature Publishing Group, 2018, roč. 14, č. 10, s. 1032-1040. ISSN 1745-2473. Dostupné z: https://dx.doi.org/10.1038/s41567-018-0203-z.

PELÁNEK, Radek, Tomáš EFFENBERGER, Matěj VANĚK, Vojtěch SASSMANN a Dominik GMITERKO. Measuring Item Similarity in Introductory Programming. Online. In Rose Luckin, Scott Klemmer, Kenneth R. Koedinger. Proceedings of the Fifth Annual ACM Conference on Learning at Scale. New York, NY, USA: ACM, 2018, s. "19:1"-"19:4", 4 s. ISBN 978-1-4503-5886-6. Dostupné z: https://dx.doi.org/10.1145/3231644.3231676.

POLČÁK, Radim, Leoš ŠEVČÍK, Michal KOŠČÍK, Jakub KLODWIG a Petr HOLUB. Metodika aplikace GDPR na výzkumná data v prostředí vysokých škol v ČR. 1. vydání. Brno: Neuveden, 2018, 156 s. Dostupné z: https://dx.doi.org/10.5281/zenodo.2532860.

SOJKA, Petr, Michal RŮŽIČKA a Vít NOVOTNÝ. MIaS: Math-Aware Retrieval in Digital Mathematical Libraries. Online. In Proceedings of the 27th ACM International Conference on Information and Knowledge Management (CIKM '18). Torino, Italy: Association for Computing Machinery, 2018, s. 1923-1926. ISBN 978-1-4503-6014-2. Dostupné z: https://dx.doi.org/10.1145/3269206.3269233.

OPPELT, Jan, Karolína TRACHTOVÁ a Marek MRÁZ. microRNA – are you real? In ENBIK2018 conference proceedings, Skalský dvůr. 2018.

OPPELT, Jan, Karolína TRACHTOVÁ a Marek MRÁZ. microRNA – are you real?! In ENBIK2018 - National Bioinformatics Conference. 2018. ISBN 978-80-7592-017-1.

BANGUI, Hind, Said RAKRAK, Said RAGHAY a Barbora BÜHNOVÁ. Moving to the Edge-Cloud-of-Things: Recent Advances and Future Research Directions. Electronics. Switzerland: MDPI, 2018, roč. 7, č. 11, s. 1-31. ISSN 2079-9292. Dostupné z: https://dx.doi.org/10.3390/electronics7110309.

BANGUI, Hind, Said RAKRAK, Said RAGHAY a Barbora BÜHNOVÁ. Moving towards Smart Cities: A Selection of Middleware for Fog-to-Cloud Services. Applied Sciences. Switzerland: MDPI, 2018, roč. 8, č. 11, s. 1-20. ISSN 2076-3417. Dostupné z: https://dx.doi.org/10.3390/app8112220.

WALLETZKÝ, Leonard a Mouzhi GE. MULTIDISCIPLINARY EDUCATION INFLUENCED BY COMPLEX SERVICES. Online. In 11th Annual International Conference of Education, Research and Innovation (ICERI 2018). Sevilla, Spain: IATED, 2018, s. 7802-7806. ISBN 978-84-09-05948-5.

STŘELÁK, David a Jiří FILIPOVIČ. Performance analysis and autotuning setup of the cuFFT library. Online. In ACM International Conference Proceeding Series. Limassol, Cyprus: ACM, 2018, s. nestránkováno, 6 s. ISBN 978-1-4503-6591-8. Dostupné z: https://dx.doi.org/10.1145/3295816.3295817.

HELFERT, Markus a Mouzhi GE. Perspectives of Big Data Quality in Smart Service Ecosystem. Journal of Information Technology Management. 2018, roč. 10, č. 4, s. 72-83. ISSN 2008-5893. Dostupné z: https://dx.doi.org/10.22059/JITM.2019.72763.

GE, Mouzhi a Vlastislav DOHNAL. Quality Management in Big Data. Informatics. Switzerland, 2018, roč. 5, č. 2. ISSN 2227-9709. Dostupné z: https://dx.doi.org/10.3390/informatics5020019.

KLUSÁČEK, Dalibor, Boris PARÁK, Václav CHLUMSKÝ a Lukáš HEJTMÁNEK. Real-life Experience with Private Cloud hosting Heterogeneous Scientific Workloads. Online. In 2018 IEEE/ACM INTERNATIONAL CONFERENCE ON UTILITY AND CLOUD COMPUTING COMPANION (UCC COMPANION). NEW YORK: IEEE, 2018, s. 115-120. ISBN 978-1-72810-359-4. Dostupné z: https://dx.doi.org/10.1109/UCC-Companion.2018.00044.

CAPUTO, Francesco, Barbora BÜHNOVÁ a Leonard WALLETZKÝ. Reflecting upon the role of smart grids in linking smartness and sustainability. Online. In Sergio Barile, Raul Espejo, Igor Perko, Marialuisa Saviano. Cybernetics and Systems: Social and Business Decisions. Neuveden: Routledge, 2018, s. 205-210. ISBN 978-0-367-66324-7. Dostupné z: https://dx.doi.org/10.4324/9780429486982-43.

CHREN, Stanislav, Bruno ROSSI, Barbora BÜHNOVÁ a Tomáš PITNER. Reliability Data for Smart Grids: Where the Real Data can be Found. Online. In Ruzicka, J. 2018 Smart City Symposium Prague (SCSP). New York: IEEE, 2018, s. 1-6. ISBN 978-1-5386-5017-2. Dostupné z: https://dx.doi.org/10.1109/SCSP.2018.8402648.

KALENDA, Martin, Petr HYNA a Bruno ROSSI. Scaling Agile in Large Organizations: Practices, Challenges, and Success Factors. Journal of Software: Evolution and Process. 2018, roč. 30, č. 10, s. 1-24. ISSN 2047-7473. Dostupné z: https://dx.doi.org/10.1002/smr.1954.

KUČERA, Adam a Tomáš PITNER. Semantic BMS: Allowing usage of building automation data in facility benchmarking. Advanced Engineering Informatics. 2018, roč. 35, January, s. 69-84. ISSN 1474-0346. Dostupné z: https://dx.doi.org/10.1016/j.aei.2018.01.002.

SCHVARCBACHER, Martin, Katarína HRABOVSKÁ, Bruno ROSSI a Tomáš PITNER. Smart Grid Testing Management Platform (SGTMP). Applied Sciences-Basel. BASEL, SWITZERLAND: MDPI AG, 2018, roč. 8, č. 11, s. 1-23. ISSN 2076-3417. Dostupné z: https://dx.doi.org/10.3390/app8112278.

PITNER, Tomáš, Mirjana IVANOVIČ, Miloš SAVIĆ a Stelios XINOGALOS. Students’ perspective on the first programming language: C-like or Pascal-like languages? Journal Education and Information Technologies. New York, USA: Springer US, 2018, roč. 23, č. 1, s. 287-302. ISSN 1360-2357. Dostupné z: https://dx.doi.org/10.1007/s10639-017-9601-6.

ALOCCI, Davide, Pavla SUCHÁNKOVÁ, Renaud COSTA, Nicolas HORY, Julien MARIETHOZ, Radka SVOBODOVÁ VAŘEKOVÁ, Philip TOUKACH a Frederique LISACEK. SugarSketcher: Quick and Intuitive Online Glycan Drawing. Molecules. Mayer und Muller, 2018, roč. 23, č. 12, s. 3206-3216. ISSN 1420-3049. Dostupné z: https://dx.doi.org/10.3390/molecules23123206.

PAPOUŠEK, Dalibor, Vojtěch KAŠE, Zdeněk POSPÍŠIL, Adam MERTEL, Jan FOUSEK a Eva VÝTVAROVÁ. Šíření křesťanství v antickém Středomoří. In Kognice a umělý život, Brno (30.5. - 1.6. 2018). 2018.

CHALUPA, Aleš, Tomáš GLOMB, Adam MERTEL, Eva VÝTVAROVÁ, Zdeněk STACHOŇ, Zdeněk POSPÍŠIL a Jan FOUSEK. Šíření „orientálních kultů“ po cestách starověkého Středomoří : Případové studie egyptských kultů a Mithraismu. In Kognice a umělý život 2018, Brno, 30.5.-1.6.2018. 2018.

POPESCU, Mirona, Mouzhi GE a Markus HELFERT. The Social Media Perception and Reality -Possible Data Quality Deficiencies between Social Media and ERP. In Proceedings of the 20th International Conference on Enterprise Information Systems. Madeira, Portugal: SCITEPRESS, 2018, s. 198-204. ISBN 978-989-758-298-1. Dostupné z: https://dx.doi.org/10.5220/0006788801980204.

ANTOL, Matej a Vlastislav DOHNAL. Towards Artificial Priority Queues for Similarity Query Execution. Online. In 2018 IEEE 34th International Conference on Data Engineering Workshops (ICDEW). Paris, France: IEEE, 2018, s. 78-83. ISBN 978-1-5386-6306-6. Dostupné z: https://dx.doi.org/10.1109/ICDEW.2018.00020.

KADLEC, Miroslav, Jan ROSECKÝ, Filip PROCHÁZKA, Barbora BÜHNOVÁ a Tomáš PITNER. Towards Discovering the Limits of Smart Grid Communication Infrastructure. In Gandolfo Dominici. Governing Business Systems. Cham, Switzerland: Springer, 2018, s. 87-99. ISBN 978-3-319-66034-9. Dostupné z: https://dx.doi.org/10.1007/978-3-319-66036-3_5.

ŠTĚPÁNEK, Petr a Mouzhi GE. Validation and Extension of the Smart City Ontology. Online. In Proceedings of the 20th International Conference on Enterprise Information Systems - Volume 2: ICEIS. Madeira, Portugal: SciTePress, 2018, s. 406-413. ISBN 978-989-758-298-1. Dostupné z: https://dx.doi.org/10.5220/0006818304060413.

WALLETZKÝ, Leonard, Barbora BÜHNOVÁ a Luca CARRUBBO. Value-Driven Conceptualization of Services in the Smart City: A Layered Approach. In Social Dynamics in a Systems Perspective. Cham, Germany: Springer, 2018, s. 85-98. ISBN 978-3-319-61966-8. Dostupné z: https://dx.doi.org/10.1007/978-3-319-61967-5_5.

PROYNOVA, Rumyana, Diogo ALEXANDRE, Martin LABLANS, David VAN ENCKEVORT, Sebastian MATE, Niina EKLUND, Kaisa SILANDER, Michael HUMMEL, Petr HOLUB a Frank ÜCKERT. A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. Stud Health Technol Inform. Netherlands: IOS Press, 2017, roč. 243, s. 75-79, 6 s. ISSN 0926-9630. Dostupné z: https://dx.doi.org/10.3233/978-1-61499-808-2-75.

GE, Mouzhi a Fabio PERSIA. A Survey of Multimedia Recommender Systems: Challenges and Opportunities. International Journal of Semantic Computing. World Scientific Publishing, 2017, roč. 11, č. 3, s. 411-428. ISSN 1793-351X. Dostupné z: https://dx.doi.org/10.1142/S1793351X17500039.

HELFERT, Markus a Mouzhi GE. A Tool for Demonstrating the Data Quality Bullwhip Effect. In Proceedings of the Innovative Teaching Approaches in Business Informatics. Wroclaw, Poland: IEEE, 2017.

GE, Mouzhi a Theodoros CHONDROGIANNIS. Assessing the Quality of Spatio-textual Datasets in the Absence of Ground Truth. In Proceedings of the 21st European Conference on Advances in Databases and Information Systems. Cham: Springer, 2017, s. 12-20. ISBN 978-3-319-67161-1. Dostupné z: https://dx.doi.org/10.1007/978-3-319-67162-8_2.

FILIPOVIČ, Jiří, Filip PETROVIČ a Siegfried BENKNER. Autotuning of OpenCL Kernels with Global Optimizations. Online. In 1st Workshop on Autotuning and Adaptivity Approaches for Energy Efficient HPC Systems (ANDARE'2017). Portland (USA): ACM, 2017, s. nestránkováno, 6 s. ISBN 978-1-4503-5363-2. Dostupné z: https://dx.doi.org/10.1145/3152821.3152877.

PANG, Chao, Fleur KELPIN, David VAN ENCKEVORT, Niina EKLUND, Kaisa SILANDER, Dennis HENDRIKSEN, Mark DE HAAN, Jonathan JETTEN, Tommy DE BOER, Bart CHARBON, Petr HOLUB, Hans HILLEGE a Morris A. SWERTZ. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinformatics. Oxford: Oxford University Press, 2017, roč. 33, č. 22, s. 3627-3634. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btx478.

RAČEK, Tomáš, Dan POLANSKÝ, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. bio.tools Sum. In ELIXIR CZ Annual Conference 2017. 2017. ISBN 978-80-86241-57-9.

FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock 1.0. 2017.

KNÍŽEK, Jiří, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL, Martin KUBA, Lubomír PAVLIŠKA a Václav PROCHÁZKA. Computation of Kovanic's Expectedness Distributions with the Help of Parallel Computing - Basic Version (with Special References of Health and Environment). INTERNATIONAL JOURNAL OF ECOLOGICAL ECONOMICS & STATISTICS. UTTARAKHAND: CENTRE ENVIRONMENT SOCIAL & ECONOMIC RESEARCH PUBL-CESER, 2017, roč. 38, č. 1, s. 96-119. ISSN 0973-1385.

HOFER-PICOUT, Philipp, Horst PICHLER, Johann EDER, Sabrina B. NEURURER, Heimo MÜLLER, Robert REIHS, Petr HOLUB, Thomas INSAM a Georg GOEBEL. Conception and Implementation of an Austrian Biobank Directory Integration Framework. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2017, roč. 15, č. 4, s. 332-340. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2016.0113.

CHALUPA, Aleš, Eva VÝTVAROVÁ, Jan FOUSEK a Adam MERTEL. Connection Between Mithraism and Roman Army Garrisons. In Historical Network Research Conference, 17.-18.10.2017, Turku, Finland. 2017.

SINGHA ROY, Nivir Kanti a Bruno ROSSI. Cost-Sensitive Strategies for Data Imbalance in Bug Severity Classification: Experimental Results. Online. In 43rd Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2017. Not specified: IEEE, 2017, s. 426-429. ISBN 978-1-5386-2140-0. Dostupné z: https://dx.doi.org/10.1109/SEAA.2017.71.

HELFERT, Markus a Mouzhi GE. Developing an Enterprise Architecture Framework and Services for Smart Cities. In Proceedings of the 25th Interdisciplinary Information Management Talks. Poděbrady, Czech Republic: Trauner Verlag, 2017, s. 383-390. ISBN 978-3-99062-119-6.

KRÁL, Jaroslav, Tomáš PITNER a Michal ŽEMLIČKA. Document-Oriented Middleware: The Way to High-Quality Software. In International Conference on Computational Science and Its Applications. 1. vyd. Cham: Springer, Cham, 2017, s. 607-619. ISBN 978-3-319-62403-7. Dostupné z: https://dx.doi.org/10.1007/978-3-319-62404-4_45.

HŘEBÍČEK, Jiří, Ralf DENZER, Gerald SCHIMAK a Tomáš PITNER. Environmental Software Systems. Computer Science for Environmental Protection12th IFIP WG 5.11 International Symposium. In IFIPAICT, volume 507. 1. vyd. Cham: Springer, Cham, 2017, 486 s. ISBN 978-3-319-89934-3. Dostupné z: https://dx.doi.org/10.1007/978-3-319-89935-0.

VÝTVAROVÁ, Eva a Jan FOUSEK. Evaluation of community detection algorithms applied to time-series connectivity networks with dynamical structure. In CompleNet'17, Dubrovnik, Croatia. 2017.

RŮŽIČKA, Michal, Vít NOVOTNÝ, Petr SOJKA, Jan POMIKÁLEK a Radim ŘEHŮŘEK. Flexible Similarity Search of Semantic Vectors Using Fulltext Search Engines. Online. In CEUR Workshop Proceedings, Vol. 1923. Vienna, Austria: Neuveden, 2017, s. 1-12. ISSN 1613-0073.

JIMÉNEZ, Rafael C, Mateusz KUZAK, Monther ALHAMDOOSH, Michelle BARKER, Bérénice BATUT, Mikael BORG, Salvador CAPELLA-GUTIERREZ, Neil Chue HONG, Martin COOK, Manuel CORPAS, Madison FLANNERY, Leyla GARCIA, Josep Ll GELPÍ, Simon GLADMAN, Carole GOBLE, Montserrat González FERREIRO, Alejandra GONZALEZ-BELTRAN, Philippa C GRIFFIN, Björn GRÜNING, Jonas HAGBERG, Petr HOLUB, Rob HOOFT, Jon ISON, Daniel S KATZ, Brane LESKOŠEK, Federico López GÓMEZ, Luis J OLIVEIRA, David MELLOR, Rowland MOSBERGEN, Nicola MULDER, Yasset PEREZ-RIVEROL, Robert PERGL, Horst PICHLER, Bernard POPE, Ferran SANZ, Maria V SCHNEIDER, Victoria STODDEN, Radosław SUCHECKI, Radka SVOBODOVÁ VAŘEKOVÁ, Harry-Anton TALVIK, Ilian TODOROV, Andrew TRELOAR, Sonika TYAGI, Maarten van GOMPEL, Daniel VAUGHAN, Allegra VIA, Xiaochuan WANG, Nathan S WATSON-HAIGH a Crouch STEVE. Four simple recommendations to encourage best practices in research software. F1000Research. 2017, roč. 6, JUN, s. 876-888. ISSN 2046-1402. Dostupné z: https://dx.doi.org/10.12688/f1000research.11407.1.

YANG, Qishan, Mouzhi GE a Markus HELFERT. Guildlines of Data Quality Issues for Data Integration in the Context of the TPC-DI Benchmark. In Proceedings of the 19th International Conference on Enterprise Information Systems. Porto, Portugal: SciTePress, 2017, s. 135-144. ISBN 978-989-758-247-9. Dostupné z: https://dx.doi.org/10.5220/0006334301350144.

POPOVICI, Vlad, Aleš KŘENEK a Eva BUDINSKÁ. Identification of "BRAF-Positive" Cases Based on Whole-Slide Image Analysis. Biomed Research International. New York: HINDAWI LTD, 2017, Neuveden, April, s. nestránkováno, 7 s. ISSN 2314-6133. Dostupné z: https://dx.doi.org/10.1155/2017/3926498.

PITNER, Tomáš, Jan MINISTR a Andreja PUCIHAR. Innovation and diversity. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 25th Interdisciplinary Information Management Talks (IDIMT) 2017 Digitalization in Management, Society and Economy. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2017, s. 63-69. ISBN 978-3-99062-119-6.

PITNER, Tomáš a Jan MINISTR. Innovation Of The Information Management In Compliance Management Area. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 25th Interdisciplinary Information Management Talks (IDIMT) 2017 Digitalization in Management, Society and Economy. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2017, s. 71-78. ISBN 978-3-99062-119-6.

VÝTVAROVÁ, Eva, Jan FOUSEK, Michal MIKL, Irena REKTOROVÁ a Eva HLADKÁ. Investigating Community Detection Algorithms and their Capacity as Markers of Brain Diseases. Online. In International Symposium on Grids and Clouds (ISGC) 2017. Academia Sinica, Taipei, Taiwan: Proceedings of Science. Taipei; Taiwan: Sissa Medialab Srl, 2017, s. 1-14. ISSN 1824-8039. Dostupné z: https://dx.doi.org/10.22323/1.293.0018.

VÝTVAROVÁ, Eva, Jan FOUSEK, Michal MIKL a Irena REKTOROVÁ. Investigating Modularity and Its Capacity As a Marker of Neurodegenerative Diseases. In 64. Společný sjezd české a slovenské společnosti pro klinickou neurofyziologii, České Budějovice. 2017.

MASSIMO, David, Mehdi ELAHI, Francesco RICCI a Mouzhi GE. Item Contents Good, User Tags Better: Empirical Evaluation of a Food Recommender System. Online. In Proceedings of the 25th Conference on User Modeling, Adaptation and Personalization. Bratislava, Slovakia: ACM, 2017, s. 373-374. ISBN 978-1-4503-4635-1. Dostupné z: https://dx.doi.org/10.1145/3079628.3079640.

ŠTĚPÁNEK, Petr, Mouzhi GE a Leonard WALLETZKÝ. IT-enabled Digital Service Design Principles - Lessons Learned from Digital Cities. Online. In Themistocleous, Marinos, Morabito, Vincenzo. Proceedings of the 14th European Mediterranean & Middle Eastern Conference on Information Systems. Coimbra, Portugal: Springer, 2017, s. 186-196. ISBN 978-3-319-65929-9. Dostupné z: https://dx.doi.org/10.1007/978-3-319-65930-5_15.

VÝTVAROVÁ, Eva, Radek MAREČEK, Jan FOUSEK, Ondřej STRÝČEK a Ivan REKTOR. Large-scale cortico-subcortical functional networks in focal epilepsies: The role of the basal ganglia. NeuroImage-Clinical. Oxford: Elsevier BV, 2017, roč. 2017, č. 14, s. 28-36. ISSN 2213-1582. Dostupné z: https://dx.doi.org/10.1016/j.nicl.2016.12.014.

RŮŽIČKA, Michal. Math Information Retrieval for Digital Libraries. Brno: Masaryk University, Faculty of Informatics, 2017, 144 s. Doctoral Thesis.

KREJČÍŘ, Vlastimil. Mathematics Index and Search in DSpace. In OAI10 DSpace user group meeting (Pre-conference of OAI 10 - The CERN - UNIGE Workshop on Innovations in Scholarly Communication). 2017.

CAPUTO, Francesco, Mouzhi GE a Leonard WALLETZKÝ. Modelling the Service Value Chain for Smart City. In Proceedings of the 25th Interdisciplinary Information Management Talks. Poděbrady, Czech Republic: Trauner Verlag, 2017, s. 375-382. ISBN 978-3-99062-119-6.

BANGUI, Hind, Mouzhi GE, Barbora BÜHNOVÁ, Said RAKRAK, Said RAGHAY a Tomáš PITNER. Multi-Criteria Decision Analysis Methods in the Mobile Cloud Offloading Paradigm. Journal of Sensor and Actuator Networks. MDPI, 2017, roč. 6, č. 4, s. 1-19. ISSN 2224-2708. Dostupné z: https://dx.doi.org/10.3390/jsan6040025.

BARTOŠEK, Miroslav, Michal RŮŽIČKA a Václav STUPKA. Nařízení GDPR a jeho implementace na vysokých školách v ČR – jak na to. In EUNIS-CZ. Dopad zavedení novely VŠ zákona do IS vysokých škol. 1. vyd. Plzeň: Západočeská univerzita v Plzni, 2017, s. 5-14. ISBN 978-80-261-0713-2.

KADLEC, Miroslav, Barbora BÜHNOVÁ a Tomáš PITNER. Planning and Scheduling for Optimizing Communication in Smart Grids. Online. In 12th International Symposium on Environmental Software Systems, ISESS 2017;. Zadar: Springer New York LLC, 2017, s. 446-456. ISBN 978-3-319-89934-3. Dostupné z: https://dx.doi.org/10.1007/978-3-319-89935-0_37.

ANTOL, Matej a Vlastislav DOHNAL. Popularity-Based Ranking for Fast Approximate kNN Search. Informatica. Lithuanian Academy of Sciences, 2017, roč. 28, č. 1, s. 1-21. ISSN 0868-4952. Dostupné z: https://dx.doi.org/10.15388/Informatica.2017.118.

DOSTÁL, Otto, Otto DOSTÁL a Michal JAVORNÍK. Právní limity nakládání s údaji o zdravotním stavu. In XIII. mezinárodní kongres informačních technologií ve zdravotnictví. 2017.

GE, Mouzhi, Markus HELFERT a Tony O'BRIEN. Predicting Data Quality Success - The Bullwhip Effect in Data Quality. In Björn Johansson. Proceedings of the 16th International Conference on Perspectives in Business Informatics Research. Copenhagen, Denmark: Springer, 2017, s. 157-165. ISBN 978-3-319-64929-0. Dostupné z: https://dx.doi.org/10.1007/978-3-319-64930-6_12.

MINISTR, Jan a Tomáš PITNER. Process Support of Information Security according to COBIT® 5. In NEMEC, R., CHYTILOVA, L. Proceedings of the 12 th International Conference on Strategic Management and its Support by Information Systems 2017. Ostrava, Czech Republic: VŠB – Technical University of Ostrava, Faculty of Economics, 2017, s. 418-424. ISBN 978-80-248-4046-8.

KOBUSIŃSKA, Anna, Adam WOLSKI, Jerzy BRZEZIŃSKI a Mouzhi GE. P2P Web Browser Middleware to Enhance Service Oriented Computing - Analysis and Evaluation. In 10th IEEE International Conference on Service-Oriented Computing and Applications (SOCA 2017). New York: IEEE, 2017, s. 58-65. ISBN 978-1-5386-1326-9. Dostupné z: https://dx.doi.org/10.1109/SOCA.2017.16.

PAZÚRIKOVÁ, Jana, Aleš KŘENEK, Vojtěch SPIWOK a Mária ŠIMKOVÁ. Reducing the number of mean-square deviation calculations with floating close structure in metadynamics. Journal of Chemical Physics. Melville: American Institute of Physics, 2017, roč. 146, č. 11, s. "115101:1"-"115101:8", 8 s. ISSN 0021-9606. Dostupné z: https://dx.doi.org/10.1063/1.4978296.

FOUSEK, Jan, Vojtěch KAŠE, Eva VÝTVAROVÁ a Adam MERTEL. Relating the Spread of Early Christianity to the Transportation Network of Ancient Mediterranean. In Historical Network Research Conference, Turku, Finland. 2017.

GE, Mouzhi a Fabio PERSIA. Research Challenges in Multimedia Recommender Systems. Online. In Proceedings of the IEEE International Conference on Semantic Computing. San Diego, USA: IEEE, 2017, s. 344-347. ISBN 978-1-5090-4896-0. Dostupné z: https://dx.doi.org/10.1109/ICSC.2017.31.

ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK a Otto DOSTÁL. Reversible Watermarking in Medical Imaging with Zero Distortion in ROI. Online. In Proceedings of 24th IEEE International Conference on Electronics, Circuits and Systems (ICECS 2017). New York: IEEE, 2017, s. 356-359. ISBN 978-1-5386-1911-7. Dostupné z: https://dx.doi.org/10.1109/ICECS.2017.8292071.

KUČERA, Adam a Tomáš PITNER. Semantic BMS: Ontology for Analysis of Building Operation Efficiency. In Hřebíček J., Denzer R., Schimak G., Pitner T. Environmental Software Systems. Computer Science for Environmental Protection. Cham: Springer, 2017, s. 349-359. ISBN 978-3-319-89934-3. Dostupné z: https://dx.doi.org/10.1007/978-3-319-89935-0_29.

RYGL, Jan, Jan POMIKÁLEK, Radim ŘEHŮŘEK, Michal RŮŽIČKA, Vít NOVOTNÝ a Petr SOJKA. Semantic Vector Encoding and Similarity Search Using Fulltext Search Engines. Online. In Proceedings of the 2nd Workshop on Representation Learning for NLP, RepL4NLP 2017 c/o ACL 2017. Vancouver, Canada: Association for Computational Linguistics, ACL, 2017, s. 81-90. ISBN 978-1-945626-62-3. Dostupné z: https://dx.doi.org/10.18653/v1/W17-2611.

KLUSÁČEK, Dalibor, Boris PARÁK a Lukáš HEJTMÁNEK. Scheduling Challenges in a Shared Private Cloud Infrastructure. CGW Workshop'17 Proceedings. 2017, roč. 2017, č. 1, s. 23-24.

SCHVARCBACHER, Martin a Bruno ROSSI. Smart Grids Co-Simulations with Low-Cost Hardware. Online. In 43rd Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2017. Not specified: IEEE, 2017, s. 252-255. ISBN 978-1-5386-2140-0. Dostupné z: https://dx.doi.org/10.1109/SEAA.2017.43.

BANGUI, Hind, Barbora BÜHNOVÁ, Said RAKRAK a Said RAGHAY. Smart mobile technologies for the city of the future. Online. In Smart City Symposium Prague (SCSP), 2017. Neuveden: IEEE, 2017, s. 1-6. ISBN 978-1-5386-3825-5. Dostupné z: https://dx.doi.org/10.1109/SCSP.2017.7973851.

IVANOVIČ, Mirjana, Stelios XINOGALOS, Tomáš PITNER a Miloš SAVIĆ. Technology enhanced learning in programming courses – international perspective. Education and Information Technologies. New York, NY, USA: Springer US, 2017, roč. 22, č. 6, s. 2981-3003. ISSN 1360-2357. Dostupné z: https://dx.doi.org/10.1007/s10639-016-9565-y.

VÝTVAROVÁ, Eva, Jan FOUSEK, Marek BARTOŇ, Radek MAREČEK, Martin GAJDOŠ, Martin LAMOŠ, Marie NOVÁKOVÁ, Tomáš SLAVÍČEK, Igor PETERLÍK a Michal MIKL. The Impact of Diverse Preprocessing Pipelines on Brain Functional Connectivity. Online. In 25th European Signal Processing Conference (EUSIPCO), Kos, Greece. Kos, Greece: IEEE, 2017, s. 2644-2648. ISBN 978-0-9928626-7-1. Dostupné z: https://dx.doi.org/10.23919/EUSIPCO.2017.8081690.

PITNER, Tomáš, Jan MINISTR, Daniel TOVARŇÁK, Filip KŠENZULIAK a Adam KUČERA. Towards a Common Logging and Monitoring Framework for Critical Infrastructures. In Radek Němec, Lucie Chytilová. Strategic Management and its Support by Information Systems (SMSIS). Ostrava: VŠB - Technical University of Ostrava, 2017, s. 488-495. ISBN 978-80-248-4046-8.

KADLEC, Miroslav, Barbora BÜHNOVÁ, Jan TOMŠÍK, Jan HERMAN a Kateřina DRUŽBÍKOVÁ. Weather forecast based scheduling for demand response optimization in smart grids. Online. In Smart City Symposium Prague (SCSP), 2017. Prague: IEEE, 2017, s. 1-6. ISBN 978-1-5386-3825-5. Dostupné z: https://dx.doi.org/10.1109/SCSP.2017.7973867.

ROČEK, Aleš, Karel SLAVÍČEK, Otto DOSTÁL a Michal JAVORNÍK. A new approach to fully-reversible watermarking in medical imaging with breakthrough visibility parameters. Biomedical Signal Processing and Control. Elsevier, 2016, roč. 29, č. 7, s. 44-52. ISSN 1746-8094. Dostupné z: https://dx.doi.org/10.1016/j.bspc.2016.05.005.

FILIPOVIČ, Jiří, Jana PAZÚRIKOVÁ, Aleš KŘENEK a Vojtěch SPIWOK. Accelerated RMSD Calculation for Molecular Metadynamics. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgie: EUROSIS - ETI, 2016, s. 278-280. ISBN 978-90-77381-95-3.

HOLUB, Petr, Morris A. SWERTZ, Robert REIHS, David VAN ENCKEVORT, Heimo MÜLLER a Jan-Eric LITTON. BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2016, roč. 14, č. 6, s. 559-562. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2016.0088.

MAYRHOFER, Michaela Th., Petr HOLUB, Andrea WUTTE a Jan-Eric LITTON. BBMRI-ERIC: the novel gateway to biobanks. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz. 2016, roč. 2016, s. 1-6. ISSN 1437-1588. Dostupné z: https://dx.doi.org/10.1007/s00103-015-2301-8.

RUSŇÁK, Vít, Pavel TROUBIL, Eva HLADKÁ, Desana DAXNEROVÁ, Pavel KAJABA, Matej MINÁRIK, Svatoslav ONDRA a Tomáš SKLENÁK. CoUnSiL: A Videoconferencing Environment for Interpretation of Sign Language. Online. In Okyay Kaynak. 2016 15th International Conference on Information Technology Based Higher Education and Training (ITHET). Istanbul, Turkey: IEEE, 2016, s. 1-8. ISBN 978-1-5090-0778-3. Dostupné z: https://dx.doi.org/10.1109/ITHET.2016.7760711.

RUSŇÁK, Vít, Pavel TROUBIL, Svatoslav ONDRA, Tomáš SKLENÁK, Desana DAXNEROVÁ, Eva HLADKÁ, Pavel KAJABA, Matej MINÁRIK, Peter NOVÁK, Christoph DAMM a Jaromír KALA. CoUnSiL: Collaborative Universe for Remote Interpreting of Sign Language in Higher Education. Online. In Klaus Miesenberger. Computers Helping People with Special Needs: 15th International Conference, ICCHP 2016, Linz, Austria, July 13-15, 2016, Proceedings, Part II. ICCHP 2016. Neuveden: Springer International Publishing, 2016, s. 392-399. ISBN 978-3-319-41267-2. Dostupné z: https://dx.doi.org/10.1007/978-3-319-41267-2_55.

RUSŇÁK, Vít. CoUnSiL: Videoconferencing Environment for Remote Interpreting of Sign Language in Higher Education. In Sign Languages in Tertiary Education and Scholarly Publications in Sign Languages. 2016.

KŘENEK, Aleš, Tomáš RAČEK a Jana PAZÚRIKOVÁ. Direct SAXS Curve Fitting with an Ensable of Conformations. In Molecular Machines 2016. 2016.

PAZÚRIKOVÁ, Jana, Aleš KŘENEK a Luděk MATYSKA. Guided Optimization Method for Fast and Accurate Atomic Charges Computation. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgicko: EUROSIS - ETI, 2016, s. 267-274. ISBN 978-90-77381-95-3.

KABÁT, Milan, Vojtěch DAVID, Petr HOLUB a Martin PULEC. High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, roč. 54, č. 1, s. 326 - 335. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2015.04.007.

KOZEL, Jiří, Andrea KÝNOVÁ, Petr KOVÁCS, Pavel BOHUMEL a Jan SIKORA. Mapová knihovna munimap. 2016.

RŮŽIČKA, Michal, Petr SOJKA a Martin LÍŠKA. Math Indexer and Searcher under the Hood: Fine-Tuning Query Expansion and Unification Strategies. Online. In Noriko Kando and Kazuaki Kishida and Makoto P. Kato and Shuhei Yamamoto. Proceedings of the 12th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2016, s. 331-337. ISBN 978-4-86049-071-3.

SOJKA, Petr a Michal RŮŽIČKA. Math-Aware Search Interfaces for Digital Mathematical Libraries (DML). 2016.

KREJČÍŘ, Vlastimil. Memento – cestování časem na webu. Online. In INFORUM 2016: 22. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2016, s. nestránkováno, 11 s. ISSN 1801-2213.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Jana PAZÚRIKOVÁ, Stanislav GEIDL a Jaroslav KOČA. NEEMP – nástroj pro parametrizaci EEM. In ENBIK2016. 2016. ISBN 978-80-7080-960-0.

RAČEK, Tomáš, Jana PAZÚRIKOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ, Stanislav GEIDL, Aleš KŘENEK, Francesco Luca FALGINELLA, Vladimír HORSKÝ, Václav HEJRET a Jaroslav KOČA. NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2016, roč. 8, October, s. nestránkováno, 14 s. ISSN 1758-2946. Dostupné z: https://dx.doi.org/10.1186/s13321-016-0171-1.

SEDLÁŘ, Milan, Bin JI, Tomáš KRÁTKÝ, Tomáš REBOK a Rostislav HUZLÍK. Numerical and experimental investigation of three-dimensional cavitating flow around the straight NACA2412 hydrofoil. Ocean Engineering. Elsevier Ltd., 2016, roč. 123, č. 123, s. 357-382. ISSN 0029-8018. Dostupné z: https://dx.doi.org/10.1016/j.oceaneng.2016.07.030.

ANTOL, Matej a Vlastislav DOHNAL. Optimizing Query Performance with Inverted Cache in Metric Spaces. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 20th East European Conference, ADBIS 2016. Cham: Springer, 2016, s. 60-73. ISBN 978-3-319-44038-5. Dostupné z: https://dx.doi.org/10.1007/978-3-319-44039-2_5.

PAZÚRIKOVÁ, Jana, Tomáš RAČEK, Stanislav GEIDL, Radka SVOBODOVÁ VAŘEKOVÁ a Aleš KŘENEK. Parametrizace ekvalizace elektronegativity metodou diferenciální evoluce. In ENBIK 2016. 2016.

PLANTEFÈVE, Rosalie, Igor PETERLÍK, Nazim HAOUCHINE a Stéphane COTIN. Patient-Specific Biomechanical Modeling for Guidance During Minimally-Invasive Hepatic Surgery. ANNALS OF BIOMEDICAL ENGINEERING. NEW YORK: SPRINGER, 2016, roč. 44, č. 1, s. 139-153. ISSN 0090-6964. Dostupné z: https://dx.doi.org/10.1007/s10439-015-1419-z.

HAMZÉ, Noura, Igor PETERLÍK, Stéphane COTIN a Caroline ESSERT. Preoperative trajectory planning for percutaneous procedures in deformable environments. Computerized Medical Imaging and Graphics. Elsevier, 2016, roč. 47, č. 1, s. 16-28. ISSN 0895-6111. Dostupné z: https://dx.doi.org/10.1016/j.compmedimag.2015.10.002.

MELICHAR, Marek, Jan HUTAŘ, Michal RŮŽIČKA, Zdeněk HRUŠKA, Zdeněk VAŠEK, Miroslav BARTOŠEK a Martin LHOTÁK. Projekt ArcLib – budování systému pro dlouhodobou archivaci digitálních dat v českých knihovnách. IT lib. Bratislava: Centrum vedecko-technických informácií SR, 2016, roč. 20, č. 2, s. 13-17. ISSN 1335-793X.

ROČEK, Aleš, Karel SLAVÍČEK a Michal JAVORNÍK. RONI Size and another Attributes of Representative Sample of Medical Images in Common Hospital Operation, Related to Securing by Watermarking Methods. In Prof. Osama Mohamed Mohamed Ahamed. International Conference on Image Processing, Production and Computer Science (ICIPCS'16). London: URENG, 2016, s. 44-51. ISBN 978-93-84422-62-2.

RYGL, Jan, Petr SOJKA, Michal RŮŽIČKA a Radim ŘEHŮŘEK. ScaleText: The Design of a Scalable, Adaptable and User-Friendly Document System for Similarity Searches : Digging for Nuggets of Wisdom in Text. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Tenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2016. Brno: Tribun EU, 2016, s. 79-87. ISBN 978-80-263-1095-2.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. Toward Natural Multi-User Interaction in Advanced Collaborative Display Environments. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, roč. 54, January 2016, s. 313-325. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2015.03.019.

MERINO-MARTINEZ, Roxana, Loreana NORLIN, David VAN ENCKEVORT, Gabriele ANTON, Simone SCHUFFENHAUER, Kaisa SILANDER, Linda MOOK, Petr HOLUB, Raffael BILD, Morris SWERTZ a Jan-Eric LITTON. Towards Global Biobank Integration by Implementation of the Minimum Information About Biobank data Sharing (MIABIS 2.0 Core). Biopreservation and Biobanking. 2016. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2015.0070.

BARTOŠEK, Miroslav. Uchování digitálního dědictví a systém Archivematica. ITlib. Infotmačné technológie a knižnice. Bratislava: Centrum vedecko-technických informácií SR, 2016, roč. 2016, č. 2, s. 32-35. ISSN 1335-793X.

BARTOŠEK, Miroslav. Vývoj postoje k vědeckým informacím a modelu otevřeného přístupu. In Petra Dědičová, Pavla Rygelová, Jiří Marek, Jan Skůpa. Otevřený přístup k vědeckým informacím : současný stav v České republice a ve světě. První vydání. Brno: Nakladatelství VUTIUM, 2016, s. 14-22. ISBN 978-80-214-5282-4.

FILIPOVIČ, Jiří, Jan PLHÁK a David STŘELÁK. Acceleration of dRMSD Calculation and Efficient Usage of GPU Caches. In Waleed Smari. Proceedings of IEEE International Conference on High Performance Computing & Simulation. neuveden: IEEE, 2015, s. 47-54. ISBN 978-1-4673-7812-3. Dostupné z: https://dx.doi.org/10.1109/HPCSim.2015.7237020.

KŘENEK, Aleš, Karel KUBÍČEK, Richard ŠTEFL a Jiří FILIPOVIČ. Accurate Fitting SAXS Curves with NMR Structure Ensembles. Online. In Simon Lin, Vicky Huang. Proceedings of International Symposium on Grids and Clouds 2015. Pissa: Proceedings of Science, 2015, s. nestránkováno, 9 s. ISSN 1824-8039.

BARTOŠEK, Miroslav. Archivematica - open source systém pro digitální archivaci. Knihovna. Praha: Národní knihovna ČR, 2015, Ročník 26, č. 2, s. 25-38. ISSN 1801-3252.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. Combining Text and Formula Queries in Math Information Retrieval: Evaluation of Query Results Merging Strategies. In Davood Rafiei, Katsumi Tanaka. NWSearch '15: Proceedings of the First International Workshop on Novel Web Search Interfaces and Systems. New York, NY, USA: ACM, 2015, s. 7-9. ISBN 978-1-4503-3789-2. Dostupné z: https://dx.doi.org/10.1145/2810355.2810359.

TALBOT, Hugo, Nazim HAOUCHINE, Igor PETERLÍK, Jeremie DEQUIDT, Christian DURIEZ, Hervé DELINGETTE a Stephane COTIN. Dirk Bartz Prize for Visual Computing in Medicine. Eurographics Association, 2015.

TÓTH, Šimon a Miroslav RUDA. Distributed job scheduling in MetaCentrum. Journal of Physics: Conference Series. Institute of Physics, 2015, roč. 608, č. 1, s. 012025-12029. ISSN 1742-6596. Dostupné z: https://dx.doi.org/10.1088/1742-6596/608/1/012025.

BARTOŠEK, Miroslav. Dlouhodobé uchování digitálních informací, Archivematica a projekt LTP-pilot. Duha. Brno: Moravská zemská knihovna v Brně, 2015, roč. 29, č. 3, s. 36-37. ISSN 0862-1985.

KOZEL, Jiří, Pavel BOHUMEL, Petr KOVÁCS a Andrea KÝNOVÁ. GIS of Traditional Folk Culture. Geomatics Workbooks. Politecnico di Milano, 2015, roč. 12, July 2015, s. 113-120. ISSN 1591-092X.

GEIDL, Stanislav, Tomáš BOUCHAL, Tomáš RAČEK, Radka SVOBODOVÁ VAŘEKOVÁ, Václav HEJRET, Aleš KŘENEK, Ruben ABAGYAN a Jaroslav KOČA. High-quality and universal empirical atomic charges for chemoinformatics applications. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2015, roč. 7, DEC, s. 1-10. ISSN 1758-2946. Dostupné z: https://dx.doi.org/10.1186/s13321-015-0107-1.

HAOUCHINE, Nazim, Stephane COTIN, Igor PETERLÍK, Jeremie DEQUIDT, Mario Sanz LOPEZ, Erwan KERRIEN a Marie-Odile BERGER. Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery. IEEE Transactions on Visualization and Computer Graphics. 2015, roč. 21, č. 5, s. 584 - 597. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2014.2377772.

TOMÁŠ, Martin, Tomáš REBOK a Christos EFSTATHIOU. Iterative Optimization of a Multi-compartmental Air Quality Modelling System. In Jan Kofroň and Tomáš Vojnar. Tenth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2015). první. Brno: MEMICS 2015, 2015, s. 70-81. ISBN 978-80-214-5254-1.

ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Radek OŠLEJŠEK, Zdenek EICHLER, Dalibor TOTH, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Václav RAČANSKÝ, Ivo NUTÁR a Dušan LAGO. KYPO - Kybernetický polygon. 2015.

DOSTÁL, Otto, Otto DOSTÁL a Michal JAVORNÍK. Legislativní aspekty dalšího rozvoje v oblasti telemedicíny. In XI. mezinárodní kongres informačních technologií ve zdravotnictví. 2015.

MALACH, Roman, Daniel DRÁPALA, Roman DOUŠEK, Alena KŘÍŽOVÁ, Martina PAVLICOVÁ, Miroslav VÁLKA, Jitka SPURNÁ, Andrea KÝNOVÁ, Petr KOVÁCS, Pavel BOHUMEL, Jiří KOZEL, Jana MALECKÁ, Marie NOVOTNÁ, Terézia GABRHELOVÁ, Anna HORÁKOVÁ, Daniela KOSTRHOUNOVÁ, Veronika KUTHANOVÁ, Barbora MACHOVÁ, Eva ŠIPÖCZOVÁ a Barbora VALEŠOVÁ. Mapa bibliografických informací tradiční lidové kultury. 2015.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Multicast Routing for High-Quality Multimedia Environments: Deployment and New Problems. Online. In Ingo Schwab, Leo van Moergestel, Gil Gonçalves. INTELLI 2015, The Fourth International Conference on Intelligent Systems and Applications. USA: IARIA, 2015, s. 61-65. ISBN 978-1-61208-437-4.

RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL a Petr HOLUB. MUSE framework 2.0. 2015.

SPIWOK, Vojtěch, Pavel OBORSKÝ, Jana PAZÚRIKOVÁ, Aleš KŘENEK a Blanka KRÁLOVÁ. Nonlinear vs. linear biasing in Trp-cage folding simulations. Journal of the chemical society. Faraday transactions II, Journal of chemical physics. London: Chemical society, 2015, roč. 142, č. 11, s. nestránkováno, 8 s. ISSN 0021-9606. Dostupné z: https://dx.doi.org/10.1063/1.4914828.

SVOBODA, David, Vladimír ULMAN a Igor PETERLÍK. On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging. Stoughton (WI, USA): Engineering in Medicine and Biology Society, 2015, s. 712-716. ISBN 978-1-4799-2374-8. Dostupné z: https://dx.doi.org/10.1109/ISBI.2015.7163972.

FILIPOVIČ, Jiří a Siegfried BENKNER. OpenCL Kernel Fusion for GPU, Xeon Phi and CPU. In Proceedings of IEEE International Symposium on Computer Architecture and High Performance Computing. Florianópolis: IEEE, 2015, s. 98-105. ISSN 1550-6533. Dostupné z: https://dx.doi.org/10.1109/SBAC-PAD.2015.29.

FILIPOVIČ, Jiří, Matúš MADZIN, Jan FOUSEK a Luděk MATYSKA. Optimizing CUDA code by kernel fusion: application on BLAS. The Journal of Supercomputing. Springer US, 2015, roč. 71, č. 10, s. 3934-3957. ISSN 0920-8542. Dostupné z: https://dx.doi.org/10.1007/s11227-015-1483-z.

PETERLÍK, Igor. Physics-Based Needle Insertion into Heterogeneous Tissues for Pre-operative Planning. Brno: IHU - Institute of image-guided surgery, 2015, 8 s. 20160201.

POLČÁK, Radim, Zdeněk ŘÍHA a Kamil MALINKA. Právní aspekty interních instrukcí – část II. Data Security Management. Praha: TATE International s.r.o., 2015, XIX., 3., s. 36-38. ISSN 1211-8737.

POLČÁK, Radim, Zdeněk ŘÍHA a Kamil MALINKA. Právní aspekty interních směrnic – část I. Data Security Management. Praha: TATE International s.r.o., 2015, XIX., 2., s. 36-39. ISSN 1211-8737.

PROCHÁZKA, Filip, Tomáš REBOK a Aleš FARDA. První návrh cílové infrastruktury pro provoz systému IRIS. 2015.

PARÁK, Boris, David WALLOM, Slávek LICEHAMMER a Zdeněk ŠUSTR. Public-Private Cloud Federation Challenges. Online. 8th edition. Limassol: IEEE/ACM, 2015, s. 512 - 515. Dostupné z: https://dx.doi.org/10.1109/UCC.2015.91.

NGUYEN, Filip, Tomáš REBOK, Richard LUDVIGH a Václav TUNKA. Ruby Benchmark Suite using Docker. Online. In M. Ganzha, L. Maciaszek, M. Paprzycki. Annals of Computer Science and Information Systems, Volume 5. 2015. vyd. Poland: IEEE, 2015, s. 947-952. ISBN 978-83-60810-66-8. Dostupné z: https://dx.doi.org/10.15439/2015F99.

ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Ivo NUTÁR a Dušan LAGO. Software pro konfiguraci a monitorování virtuálního prostředí KYPO. 2015.

OŠLEJŠEK, Radek, Zdenek EICHLER, Dalibor TOTH, Pavel ČELEDA, Jakub ČEGAN, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Martin VIZVÁRY a Jan VYKOPAL. Software pro vizualizaci virtuálního prostředí KYPO. 2015.

JANČA, Radim, Kamil MALINKA a Vlasta ŠŤAVOVÁ. Systém pro distribuci dotazníků v počítačových učebnách. 2015.

PETERLÍK, Igor a Antonín KLÍMA. Towards an efficient data assimilation in physically-based medical simulations. Online. In Bin Ma et al. Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015. Washington, D.C. , USA: IEEE, 2015, s. 1412-1419. ISBN 978-1-4673-6798-1. Dostupné z: https://dx.doi.org/10.1109/BIBM.2015.7359884.

KOUŘIL, Daniel, Marcel POUL a Michal PROCHÁZKA. Using PKI to Provide Credential Delegation in non Web-based Federations. In Proceedings of the International Conference on Information Science and Applications, Lecture Notes in Electrical Engineering. Pattaya, Thailand: Springer Berlin Heidelberg, 2015, s. 525-532. ISBN 978-3-662-46577-6. Dostupné z: https://dx.doi.org/10.1007/978-3-662-46578-3_62.

SLOVÁK, Petr, Petr HOLUB a Pavel TROUBIL. Videokonferenční prostředí pro komunikaci vzdálených skupin a způsob komunikace vzdálených skupin v systému videokonferenčního prostředí. 2015. Patent. Číslo: 305294. Vydavatel: Úřad průmyslového vlastnictví. Místo vydání: Praha, ČR. Název vlastníka: Masarykova Univerzita & CESNET. Datum registrace: 3. 6. 2009. Datum přijetí: 10. 6. 2015.

JAVORNÍK, Michal, Otto DOSTÁL a Aleš ROČEK. Watermarking in Regional Medical Imaging. Online. In Valeri Mladenov, Elias Giacoumidis, Jinlong Wei. Proceedings of the 13th International Conference on Data Networks, Communications, Computers. Hungary: World Scientific and Engineering Academy and Society, 2015, s. 222-226. ISBN 978-1-61804-355-9.

HARAZIM, Hana, Petr ŠTOURAČ, Martina KOSINOVÁ, Olga SMÉKALOVÁ, Roman ŠTOUDEK, Daniel SCHWARZ, Vít RUSŇÁK a Miloš LIŠKA. Zapojení interaktivní výuky do pregraduálního studia akutní medicíny: virtuální pacient, pokročilé simulace a přenosy z operačních sálů. Anesteziologie & intenzivní medicína. Praha: Česká lékařská společnost J.E. Purkyně, 2015, roč. 26, č. 4, s. 202-212. ISSN 1214-2158.

PROCHÁZKA, Michal. Závěrečná zpráva STORK e-Academia pilot. Brno: Masarykova univerzita, 2015, 29 s.

KOUŘIL, Daniel, Tomáš REBOK, Tomáš JIRSÍK, Jakub ČEGAN, Martin DRAŠAR, Martin VIZVÁRY a Jan VYKOPAL. Cloud-based Testbed for Simulation of Cyber Attacks. In Hanan Lutfiyya and Piotr Cholda. Proceedings of the Network Operations and Management Symposium (NOMS 2014). Krakow, Poland: IEEE Xplore Digital Library, 2014, s. 1-6. ISBN 978-1-4799-0913-1. Dostupné z: https://dx.doi.org/10.1109/NOMS.2014.6838298.

PAZÚRIKOVÁ, Jana a Luděk MATYSKA. Convergence of Parareal Algorithm Applied on Molecular Dynamics Simulations. In Petr Hliněný, Zdeněk Dvořák, Jiří Jaroš, Jan Kofroň, Jan Kořenek, Petr Matula, Karel Pala. MEMICS 2014. Brno: NOVPRESS, 2014, s. 101-111. ISBN 978-80-214-5022-6.

IŠTVÁNEK, Jan, Michal JAROŠ, Aleš KŘENEK a Jana ŘEPKOVÁ. Genome assembly and annotation for red clover (Trifolium pratense; Fabaceae). American Journal of Botany. St Louis: Botanical Soc Amer Inc, 2014, roč. 101, č. 2, s. 327-337. ISSN 0002-9122. Dostupné z: https://dx.doi.org/10.3732/ajb.1300340.

KOZEL, Jiří, Pavel BOHUMEL, Petr KOVÁCS a Jitka SPURNÁ. GIS of Traditional Folk Culture. Online. In ESRI. 2014 Esri User Conference Paper Sessions. Neuveden: ESRI, 2014, s. nestránkováno, 15 s.

KOZEL, Jiří, Petr KOVÁCS, Jitka SPURNÁ, Pavel BOHUMEL a Andrea KÝNOVÁ. Kompas - webový GIS Masarykovy univerzity. 2014.

KOVÁCS, Petr a Jiří KOZEL. Kompas – webový GIS Masarykovy univerzity. Online. In Arcdata Praha. Konference GIS Esri v ČR: Sborník příspěvků. Praha: Arcdata Praha, 2014, s. 28-30. ISBN 978-80-905316-1-1.

MAREK, Jiří, Hana RUDOVÁ a Petr HOLUB. Local Search Heuristics for Media Streams Planning with Transcoding. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, s. 167-170. ISBN 978-1-4799-5393-6. Dostupné z: https://dx.doi.org/10.1109/NCA.2014.32.

RŮŽIČKA, Michal, Petr SOJKA a Martin LÍŠKA. Math Indexer and Searcher under the Hood: History and Development of a Winning Strategy. In Noriko Kando, Hideo Joho, Kazuaki Kishida. Proceedings of the 11th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2014, s. 127-134. ISBN 978-4-86049-065-2.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. Math Indexer and Searcher Web Interface: Towards Fulfillment of Mathematicians' Information Needs. In Stephen M. Watt, James H. Davenport, Alan P. Sexton, Petr Sojka, Josef Urban. Intelligent Computer Mathematics CICM 2014. Proceedings of Calculemus, DML, MKM, and Systems and Projects. LNAI 8543. Zurich: Springer International Publishing Switzerland, 2014, s. 444-448. ISBN 978-3-319-08433-6. Dostupné z: https://dx.doi.org/10.1007/978-3-319-08434-3_36.

SZALAI, Dominik, Robert ŠIŠKA, David FORMÁNEK, Jakub ADLER a Michal RŮŽIČKA. MathCanEval 1.0. 2014.

FORMÁNEK, David, Robert ŠIŠKA, Dominik SZALAI, Jakub ADLER, Michal RŮŽIČKA, Martin LÍŠKA a Petr SOJKA. MathML Canonicalizer 1.0.0. 2014.

RŮŽIČKA, Michal. Maths Information Retrieval for Digital Libraries. 2014. ISBN 978-3-319-08434-3.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Media Streams Planning with Uncertain Link Capacities. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, s. 197-204. ISBN 978-1-4799-5393-6. Dostupné z: https://dx.doi.org/10.1109/NCA.2014.37.

RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL a Petr HOLUB. MUSE framework 1.5. 2014.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Tomáš BOUCHAL a Jaroslav KOČA. NEEMP – Tool for parameterization of empirical charge calculation method EEM. In Chemoinformatics Strasbourg Summer School 2014. 2014.

PROCHÁZKA, Michal, Slávek LICEHAMMER a Luděk MATYSKA. Perun – Modern Approach for User and Service Management. Mauritius: IIMC International Information Management Corporation Ltd, 2014, 11 s. ISBN 978-1-905824-44-1.

KREJČÍŘ, Vlastimil. ResourceSync: Synchronizace zdrojů na internetu. Online. In INFORUM 2014: 20. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2014, s. nestránkováno, 8 s. ISSN 1801-2213.

BÍL, Michal, Rostislav VODÁK, Jan KUBEČEK, Tomáš REBOK, Tomáš SVOBODA a Petr HLINĚNÝ. Vulnerability analysis methods for road networks. In European Geosciences Union General Assembly 2014 (EGU 2014). 2014.

MALÝ, Martin, Martin VLČEK, Tomáš KREČMER, Vladimír MARŠÍK, Petr GLOS, Pavla FRAŇKOVÁ, Jan KAMENICKÝ, Drahomíra LEDVINKOVÁ, Ondřej MALÝ, Petr KOVÁCS a David MIKSTEIN. Vývoj 3D aplikace v plné verzi. Kovács Petr, Mikstein David, Spurná Jitka, Lebeda Jaromír. 2014.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. WebMIaS 1.5. 2014.

SOJKA, Petr, Michal RŮŽIČKA, Maroš KUCBEL a Martin JARMAR. Accessibility Issues in Digital Mathematical Libraries. In Proceedings of the Conference Universal Learning Design 2013. Brno: Masaryk University, 2013, s. 89-97. ISBN 978-80-210-6270-2.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ a Aleš KŘENEK. Advanced implementation of atomic charge calculation with electronegativity equalization. In SVOČ 2013 v Opavě. 2013.

SLOUP, Petr a Tomáš REBOK. Automatic reconstruction of Norway spruce tree models from LiDAR data. In ISPRS2013-SSG. 2013.

SLOUP, Petr, Tomáš REBOK a Jan HANUŠ. Automatic Tree Reconstruction from its Laser Scan [poster]. In Global Change and Resilience. 2013.

HOLUB, Petr, Ondřej VOJTÍŠEK, Dalibor VALÍK, Kristína GREPLOVÁ, Dana KNOFLÍČKOVÁ a Rudolf NENUTIL. BBMRI_CZ Index Service. 2013.

TROUBIL, Pavel, Jiří MAREK, Petr HOLUB a Miloš LIŠKA. CoUniverse 1.0. 2013.

BARTOŠEK, Miroslav, Petr KOVÁŘ a Vlastimil KREJČÍŘ. Digitální knihovna fotografií. 2013.

KREJČÍŘ, Vlastimil, Tomáš HOFMAN, Michal RŮŽIČKA a Miroslav BARTOŠEK. DML-CZ DSpace. 2013.

BARTOŠEK, Miroslav a Jiří RÁKOSNÍK. DML-CZ: The Experience of a Medium-Sized Digital Mathematics Library. Notices of the AMS. Providence (USA): American Mathematical Society, 2013, roč. 60, č. 8, s. 1028-1033. ISSN 0002-9920. Dostupné z: https://dx.doi.org/10.1090/noti1031.

PAZÚRIKOVÁ, Jana a Luděk MATYSKA. Electrostatics' calculation parallel in time. In CECAM workshop on Fast Methods for Long Range Interactions in Complex Particle Systems. 2013.

BOUCHAL, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Tomáš RAČEK, Crina-Maria IONESCU, Stanislav GEIDL, Aleš KŘENEK a Jaroslav KOČA. Empirical charges for chemoinformatics applications. In GCC 2013 - 9th German Conference on Chemoinformatics. 2013. Dostupné z: https://dx.doi.org/10.1186/1758-2946-6-S1-P60.

KREJČÍŘ, Vlastimil, Dominik SZALAI, Miroslav BARTOŠEK a Lucie FABRIKOVÁ. FFdigi DSpace. 2013.

BOUCHE, Thierry, Claude GOUTORBE, Nicolas HOUILLON, Jean-Paul JORDA, Romeo ANGHELACHE, Vittorio COTI ZELATI, Vlastimil KREJČÍŘ a Petr SOJKA. Final report on external imported metadata: Deliverable 3.5 of project EuDML. 1.1 as of 30th January 2013. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2013, 23 s. Deliverable D3.5.

SLOUP, Petr, Tomáš REBOK a Jan HANUŠ. Fully-automated Occlusion-insensitive Norway Spruce Tree Reconstructions from 3D Point Cloud Data [poster]. In ISPRS2013-SSG. 2013.

HOLUB, Petr, Martin ŠROM, Martin PULEC, Jiří MATELA a Martin JIRMAN. GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2013, roč. 29, č. 8, s. 1991-2006. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2013.06.006.

HEJTMÁNEK, Lukáš, David ANTOŠ a Luboš KOPECKÝ. Choice of Data Transfer Protocols in Remote Storage Applications. CESNET, z.s.p.o., 2013, 21 s. CESNET Technical Report 1/2013.

MAREK, Jiří, Petr HOLUB a Hana RUDOVÁ. Local Search Heuristics for Media Streams Planning Problem. In Leonard Barolli, Fatos Xhafa, Makoto Takizawa, Tomoya Enokido, Hui-Huang Hsu. Proceedings of the 7th IEEE International Conference on Advanced Information Networking and Applications. Washington: IEEE Computer Society, 2013, s. 945-953. ISBN 978-0-7695-4953-8. Dostupné z: https://dx.doi.org/10.1109/AINA.2013.132.

RŮŽIČKA, Michal. Masaryk University DOI Tools. 2013.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Media Streams Planning with Transcoding. Online. In 12th IEEE International Symposium on Network Computing and Applications (NCA 2013). USA: IEEE, 2013, s. 41-48. ISBN 978-0-7685-5043-6. Dostupné z: https://dx.doi.org/10.1109/NCA.2013.46.

RŮŽIČKA, Michal, Petr KOVÁŘ a Vlastimil KREJČÍŘ. Metadata Editor FFdigi. 2013.

SITERA, Jiří, Zdeněk ŠUSTR, Boris PARÁK a Daniel KOUŘIL. Monitoring Virtualized Infrastructure in the Context of Grid Job Execution. International Journal On Advances in Systems and Measurements. 2013, roč. 6, 3,4. ISSN 1942-261X.

RUSŇÁK, Vít, Lukáš RUČKA, Martin ĽUPTÁK a Petr HOLUB. MUSE framework 1.1.1. 2013.

ŠTĚPÁN, Jakub, Petr KULHÁNEK, Milan LENČO, Zora STŘELCOVÁ, Aleš KŘENEK a Jaroslav KOČA. Nemesis - a molecular modeling package. Online. In Uli Fechner. Journal of Cheminformatics 2013, 5(Suppl 1). Goslar (GER): Chemistry Central, 2013, s. 13-14. ISSN 1758-2946. Dostupné z: https://dx.doi.org/10.1186/1758-2946-5-S1-P12.

PAZÚRIKOVÁ, Jana a Luděk MATYSKA. Parallel methods for calculation of long-range electrostatic interactions. arXiv, 2013, 18 s.

BARTOŠEK, Miroslav a Vlastimil KREJČÍŘ. Portál elektronických informačních zdrojů. 2013.

MATELA, Jiří, Martin JIRMAN a Petr HOLUB. Real-time JPEG2000 for Digital Cinema and Large-Scale Image Archiving. San Jose, CA, USA: NVIDIA Corporation, 2013. GPU Technology Conference.

PROCHÁZKA, Michal a Daniel KOUŘIL. RemSig - Bezpečné úložiště digitálních certifikátů. 2013.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. Similarity Search for Mathematics: Masaryk University team at the NTCIR-10 Math Task. In Noriko Kando, Kazuaki Kishida. Proceedings of the 10th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2013, s. 686-691. ISBN 978-4-86049-062-1.

SOCHOR, Jan, Petr HOLUB a Ondřej VOJTÍŠEK. THALAMOSS Data Management Platform. 2013.

REBOK, Tomáš, Petr SLOUP, Jan HANUŠ a Věroslav KAPLAN. Three-dimensional Tree Reconstructions from Terrestrial LiDAR Scans. In National Grid Infrastructure Yearbook 2011-12. 2013, s. 91-95. ISBN 978-80-904689-7-9.

WOJCIECHOWSKI, Krzys, Petr SOJKA, Nicolas HOUILLON, Michal RŮŽIČKA, Radim HATLAPATKA, Vlastimil KREJČÍŘ, Miroslav HRDINA, Jiří SOCHOR, Pavel RYCHLÝ, Aleš HORÁK, Alan SEXTON, Gilberto PEDROSA, Franck LONTIN, Thierry BOUCHE a Maciej KOŁUDA. Toolset for Image and Text Processing and Metadata Enhancements — Final Release: Deliverable 7.4 of project EuDML. 1 as of 9th February 2013. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2013, 24 s. Deliverable D7.4.

RŮŽIČKA, Michal, Petr SOJKA a Vlastimil KREJČÍŘ. Towards Machine-Actionable Modules of a Digital Mathematics Library: The Example of DML-CZ. In J. Carette et al. CICM 2013, LNAI 7961. Berlin / Heidelberg: Springer, 2013, s. 263-277. ISBN 978-3-642-39319-8. Dostupné z: https://dx.doi.org/10.1007/978-3-642-39320-4_17.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. Towards User-Aware Multi-Touch Interaction Layer for Group Collaborative Systems. In Kučera, A.; Henzinger, Th.A.; Nešetřil, J.; Vojnar, T.; Antoš, D. Lecture Notes in Computer Science Volume 7721. Revised Selected Papers. Berlin Heidelberg: Springer-Verlag Berlin / Heidelberg, 2013, s. 200-212. ISBN 978-3-642-36044-2. Dostupné z: https://dx.doi.org/10.1007/978-3-642-36046-6_19.

KREJČÍŘ, Vlastimil. Use cases: DML-CZ vs. FFdigi. In OAI8 DSpace User Group Meeting (pre-conference to The CERN Workshop on Innovations in Scholarly Communication (OAI8)). 2013.

TÓTH, Gabriel a Petr HOLUB. VLANManager. 2013.

MALÝ, Martin, Martin VLČEK, Tomáš KREČMER, Vladimír MARŠÍK, Petr GLOS, Pavla FRAŇKOVÁ, Jan KAMENICKÝ, Drahomíra LEDVINKOVÁ, Ondřej MALÝ, Petr KOVÁCS, David MIKSTEIN, Jaromír LEBEDA a Jitka SPURNÁ. Vývoj 3D aplikace v základní verzi. Kovács Petr, Mikstein David, Spurná Jitka, Lebeda Jaromír. 2013.

KOVÁCS, Petr a Jaromír LEBEDA. Zadávací aplikace GISTraLiK. 2013.

KŘENEK, Aleš, Petr HOLUB, Vlastimil HOLER, Daniel KOUŘIL, Filip PROCHÁZKA, Zdeněk HEJNA, Miroslav GURIČAN a František MULLER. 3.5 Million Smartmeters in the Cloud. Online. In Simon Lin. Proceedings ISGC 2013. Trieste: PoS - Proceedings of Science, 2013, s. 180-189. ISSN 1824-8039.

HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin JIRMAN, Joe MAMBRETTI, Jim CHEN, Fei YEH a Luc RENAMBOT. CZ02: Remote Collaboration Over 8K Visualization Using UltraGrid and SAGE. Chicago, USA, 2012. GLIF Technical Working Group Meeting #18.

MÁCKOVÁ, Zdeňka a Miroslav BARTOŠEK. Digitální knihovna Filozofické fakulty Masarykovy univerzity. Duha [online]. Brno: Moravská zemská knihovna, 2012, roč. 26, č. 1. ISSN 1804-4255.

SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Vít RUSŇÁK, Petr HOLUB a Eric C. HOFER. Exploring collaboration in group-to-group videoconferencing. In Julie Dugdale, Cédric Masclet, Maria Antonietta Grasso, Jean François Boujut, Parina Hassanaly. From Research to Practice in the Design of Cooperative Systems: Results and Open Challenges; Proceedings of the 10th International Conference on the Design of Cooperative Systems. London: Springer, 2012, s. 229-244, 15 s. ISBN 978-1-4471-4092-4. Dostupné z: https://dx.doi.org/10.1007/978-1-4471-4093-1_16.

TROUBIL, Pavel a Petr HOLUB. GColl2. 2012.

MATELA, Jiří, Petr HOLUB, Martin JIRMAN a Martin ŠROM. GPU-specific reformulations of image compression algorithms. Online. In Tescher, AG. Proceedings of Applications of Digital Image Processing XXXV. 8499. vyd. BELLINGHAM, WA 98227-0010 USA: SPIE-INT SOC OPTICAL ENGINEERING, 2012, s. nestránkováno, 8 s. ISBN 978-0-8194-9216-6. Dostupné z: https://dx.doi.org/10.1117/12.929971.

FEIT, Josef, Lukáš HEJTMÁNEK, Michal PROCHÁZKA, Slávek LICEHAMMER a Luděk MATYSKA. Hypertext Atlases of Pathology. 2012. ISSN 0945-6317.

RUČKA, Lukáš, Vít RUSŇÁK a Petr HOLUB. Libkerat - TUIO 2.0 implementation, version 1.0. 2012.

KREMSER, Jiří, Božena KOVÁČOVÁ, Marta PAVLOVSKÁ, Lukáš HEJTMÁNEK a David ANTOŠ. Long Term Preservation of Digital Data—Background Research. 2012.

MATELA, Jiří, Martin ŠROM a Petr HOLUB. Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000. In Lecture Notes in Computer Science 7119. Heidelberg: Springer Berlin / Heidelberg, 2012, s. 136-145. ISBN 978-3-642-25928-9. Dostupné z: https://dx.doi.org/10.1007/978-3-642-25929-6_13.

KOTÁSEK, Zdeněk, Jan BOUDA, Ivana ČERNÁ, Lukáš SEKANINA, Tomáš VOJNAR a David ANTOŠ. Mathematical and Engineering Methods in Computer Science MEMICS 2011, Seventh International Doctoral Workshop, Revised Selected Papers. Springer-Verlag, 2012, 215 s. ISBN 978-3-642-25928-9. Dostupné z: https://dx.doi.org/10.1007/978-3-642-25929-6.

LÍŠKA, Martin, David FORMÁNEK, Michal RŮŽIČKA a Petr SOJKA. MathML Canonicalizer. 2012.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. MUSE framework 1.0. 2012.

KLUSÁČEK, Dalibor, Hana RUDOVÁ a Miroslav RUDA. New Fairness and Performance Metrics for Current Grids. In Cracow Grid Workshop 2012. 2012. ISBN 978-83-61433-06-4.

FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA a Petr SOJKA. Normalization of Digital Mathematics Library Content. In Petr Sojka, Michael Kohlhase. DML 2012: Towards a Digital Mathematics Library. Brno: Masaryk University, 2012, s. 91-103. ISSN 1613-0073.

FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA a Petr SOJKA. Normalization of Digital Mathematics Library Content. In CEUR Workshop Proceedings, Volume 921. Aachen: Neuveden, 2012, s. 91-103, 12 s. ISSN 1613-0073.

KREJČÍŘ, Vlastimil. Oktávo – digitální knihovna FF MU. In 5. setkání českých uživatelů systému DSpace. 2012.

KABÁT, Milan a Petr HOLUB. Parallelized LDGM Coding for Demanding Multimedia Applications. In Antonin Kucera, Thomas A. Henzinger, Jaroslav Nesetril, Tomas Vojnar, David Antos. Memics 2012, Eighth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. First edition. Brno: Novpress s.r.o., 2012, s. 28-37. ISBN 978-80-87342-15-2.

CHLUMSKÝ, Václav, Dalibor KLUSÁČEK a Miroslav RUDA. Planning, Predictability and Optimization within the TORQUE Scheduler. In Antonín Kučera, Thomas Henzinger, Jaroslav Nešetřil, Tomáš Vojnar, David Antoš. MEMICS 2012. první. Brno: Novpress s.r.o., 2012, s. 96-97. ISBN 978-80-87342-15-2.

TÓTH, Šimon a Miroslav RUDA. Practical Experiences with Torque Meta-Scheduling in The Czech National Grid. Krakow, Poland: AGH University of Science and Technology Press, 2012, s. 33-45. ISSN 1508-2806.

HOLUB, Petr, Kamila GREPLOVÁ, Dana KNOFLÍČKOVÁ a Dalibor VALÍK. The Biobanking Research Infrastructurec BBMRI_CZ: a Critical Tool to Enhance. Klinická onkologie. Praha: Česká lékařská společnost J.E.Purkyně, 2012, roč. 2012, č. 2, s. 2S78- 2S81, 4 s. ISSN 0862-495X.

KLUSÁČEK, Dalibor, Václav CHLUMSKÝ a Miroslav RUDA. THE EXTENSION OF TORQUE SCHEDULER ALLOWING THE USE OF PLANNING AND OPTIMIZATION IN GRIDS. Computer Science Journal. Krakow, Poland: AGH University of Science and Technology, 2012, roč. 13, č. 2, s. 5-19. ISSN 1508-2806. Dostupné z: https://dx.doi.org/10.7494/csci.2012.13.2.5.

SOJKA, Petr, Krzysztof WOJCIECHOWSKI, Nicolas HOUILLON, Michal RŮŽIČKA a Radim HATLAPATKA. Toolset for Image and Text Processing and Metadata Enhancements — Value release: Deliverable 7.3 of project EuDML. 1.01 as of 8th March 2012. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2012, 32 s. Deliverable D7.3.

HOLUB, Petr, Jiří MATELA, Martin PULEC a Martin ŠROM. UltraGrid: Low-Latency High-Quality Video Transmissions on Commodity Hardware. In Proceedings of the 20th ACM international conference on Multimedia. New York, NY, USA: ACM, 2012, s. 1457-1460. ISBN 978-1-4503-1089-5. Dostupné z: https://dx.doi.org/10.1145/2393347.2396519.

HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin ŠROM a Martin JIRMAN. UltraGrid 1.1. 2012.

HŘEBÍČEK, Jiří, Miroslav KUBÁSEK, Lukáš KOHÚT, Luděk MATYSKA, Lucia TOKÁROVÁ a Jaroslav URBÁNEK. Vědecké výpočty v matematické biologii. Brno: Akademické nakladatelství CERM, 2012, 117 s. ISBN 978-80-7204-781-9.

KUČERA, Antonín, Thomas A. HENZINGER, Jaroslav NEŠETŘIL, Tomáš VOJNAR a David ANTOŠ. 8th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2012. ISBN 978-80-87342-15-2.

PROCHÁZKA, Michal, Daniel KOUŘIL, Romain WARTEL, Christos KANELLOPOULOS a Christos TRIANTAFYLLIDIS. A Race for Security: Identifying Vulnerabilities on 50 000 Hosts Faster than Attackers. Taipei, Taiwan: Academia Sinica, 2011. ISGC 2011 & OGF 31.

SOJKA, Petr, Martin LÍŠKA a Michal RŮŽIČKA. Building Corpora of Technical Texts : Approaches and Tools. In Aleš Horák, Pavel Rychlý. Fifth Workshop on Recent Advances in Slavonic Natural Languages Processing, RASLAN 2011. první. Brno: Tribun EU, 2011, s. 71--82, 11 s. ISBN 978-80-263-0077-9.

MATYSKA, Luděk a David ANTOŠ. Centrum CERIT-SC po roce příprav. ÚVT MU, 2011, 3 s. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.

KREJČÍŘ, Vlastimil. Co je (staro)nového v DSpace. In 4. setkání českých uživatelů systému DSpace. 2011.

GOLEMBIOVSKÝ, Tomáš a Aleš KŘENEK. Compression of Vector Field Changing in Time. Online. In Ludek Matyska, Michal Kozubek, Tomas Vojnar and Pavel Zemcik, David Antos. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Dagstuhl: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, s. 40-46. ISBN 978-3-939897-22-4.

BARTOŠEK, Miroslav. Česká digitální matematická knihovna a projekt EuDML. In 6. Česko-slovenské soustředění matematické olympiády a Setkání českých a slovenských matematiků. 2011.

HOLUB, Petr, Hana RUDOVÁ a Miloš LIŠKA. Data Transfer Planning with Tree Placement for Collaborative Environments. Constraints. Springer, 2011, roč. 16, č. 3, s. 283-316. ISSN 1383-7133. Dostupné z: https://dx.doi.org/10.1007/s10601-011-9106-7.

BARTOŠEK, Miroslav. DML-CZ: česká digitální matematická knihovna v roce 2011. ProInflow. Brno: Masarykova univerzita, 2011, roč. 3, listopad, s. 5-12. ISSN 1804-2406.

HARTMAN, Sam, Jens JENSEN, Daniel KOUŘIL a Michal PROCHÁZKA. Easing Access to Grids Using Moonshot. Praha: TERENA Networking Conference, 2011.

MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures. In Storer, James A. and Marcellin, Michael W. Data Compression Conference (DCC), 2011. Washington, DC, USA: IEEE Computer Society, 2011, s. 423-432. ISBN 978-0-7695-4352-9. Dostupné z: https://dx.doi.org/10.1109/DCC.2011.49.

RADOSLAV, Bodó a Daniel KOUŘIL. EGI Security challenge 5: Lehce na cvičišti . . . In Sborník příspěvků 39. konference EurOpen.CZ. 2011. ISBN 978-80-86583-22-8.

SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Petr HOLUB a Eric HOFER. Exploring Trust in Group-to-Group Video-Conferencing. Online. In CHI EA '11 Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM New York, NY, USA, 2011, s. 1459-1464. ISBN 978-1-4503-0268-5. Dostupné z: https://dx.doi.org/10.1145/1979742.1979791.

KOUŘIL, Daniel, Sam HARTMAN, Josh HOWLETT, Jens JENSEN a Michal PROCHÁZKA. Federated Access to Grids. Vilnius: EGI User Forum, 2011.

MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, s. 77--84. ISBN 978-3-939897-22-4.

PROCHÁZKA, Michal a Daniel KOUŘIL. Jak sledovat zranitelnosti na 50 000 strojích. Data Security Management. Praha: Tate International, 2011, roč. 1/2011, s. 14-17. ISSN 1211-8737.

ANTOŠ, David, Petr HOLUB a Ivana KŘENKOVÁ. Kterak posluchárny spojovati a ještě záznam poříditi aneb audiovizuální technika na MU. ÚVT MU, 2011, 5 s. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.

KOTÁSEK, Zdeněk, Jan BOUDA, Ivana ČERNÁ, Lukáš SEKANINA, Tomáš VOJNAR a David ANTOŠ. MEMICS 2011, Seventh Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno University of Technology, Antonínská 548/1, Brno 601 90, 2011, 146 s. ISBN 978-80-214-4305-1.

MATELA, Jiří, Martin PULEC a Petr HOLUB. multiOUT. 2011.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. MUSE framework 0.1. 2011.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. MUSE: Multi-Sensor Framework. 2011.

BARTOŠEK, Miroslav, Michal BRANDEJS a Ivana ČERNÁ. Otevřený přístup k vědeckým informacím na Masarykově univerzitě. ITlib. Informačné technológie a knižnice. Bratislava: Centrum VTI SR, 2011, roč. 2011, č. 2, s. 34-35. ISSN 1335-793X.

MATYSKA, Luděk, Miroslav RUDA a Šimon TÓTH. Peer-to-peer Cooperative Scheduling Architecture for National Grid Infrastructure. In Simon C.Lin, Eric Yen. Data Driven e-Science. Academia Sinica Grid Computing Centre, 2011, s. 105-118. ISBN 978-1-4419-8014-4.

RŮŽIČKA, Michal. Použití Subversion pro verzování TeXových dokumentů. Zpravodaj CSTUG. Brno: CSTUG, 2011, roč. 2011, č. 1, s. 21–64. ISSN 1211-6661. Dostupné z: https://dx.doi.org/10.5300/2011-1/21.

RŮŽIČKA, Michal a Petr SOJKA. Redakční systém odborného časopisu s podporou exportu do digitální knihovny. Zpravodaj CSTUG. Brno: CSTUG, 2011, roč. 2011, č. 1, s. 4–20. ISSN 1211-6661. Dostupné z: https://dx.doi.org/10.5300/2011-1/4.

ŠPÁNEK, Roman, Daniel KOUŘIL, Martin KUBA a Michal PROCHÁZKA. Reputation Based Trust Management System Supporting Collaboration in a Medical Application. In Proceedings of e-Technologies and Networks for Development (ICeND 2011), Communications in Computer and Information Science, vol. 171. Heidelberg: Springer Berlin, 2011, s. 285-297. ISBN 978-3-642-22729-5.

RŮŽIČKA, Michal a Petr SOJKA. Scientific Journal Processing System with the Capability of Exporting to a Digital Library using MathML. 2011.

RŮŽIČKA, Jan, Miroslav VOZŇÁK, Petr HOLUB, Jiří MATELA, Michal KRSEK, Jiří NAVRÁTIL, Lukáš MACURA, Miloš LIŠKA a Filip ŘEZÁČ. Seminář multimédií. 2011.

MATYSKA, Luděk, Michal KOZUBEK, Tomáš VOJNAR, Pavel ZEMČÍK a David ANTOŠ. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011. ISBN 978-3-939897-22-4.

CHLUMSKÝ, Václav, Dalibor KLUSÁČEK a Miroslav RUDA. The Extension of TORQUE Scheduler Allowing the Use of Planning and Optimization Algorithms in Grids. In Cracow Grid Workshop. 2011.

TÓTH, Šimon, Miroslav RUDA a Luděk MATYSKA. Towards Peer-to-Peer Scheduling Architecture for the Czech National Grid. Krakow, Poland: Academic Computer Centre CYFRONET AGH, 2011, s. 92-101. ISBN 978-83-61433-03-3.

PULEC, Martin, Jiří MATELA a Petr HOLUB. UltraGrid Streaming to SAGE. 2011.

PULEC, Martin, Martin ŠROM, Petr HOLUB a Jiří MATELA. UltraGrid 0.9. 2011.

PULEC, Martin, Petr HOLUB, Jiří MATELA, Martin ŠROM a Martin JIRMAN. UltraGrid 1.0. 2011.

BALÁKOVÁ, Lenka, Petr ŠTOURAČ, Ivo KŘIKAVA, Pavel ŠEVČÍK, Daniel SCHWARZ, Ivo ŠNÁBL, Radim ŠUSTR a Petr HOLUB. Využití e-learningového portálu AKUTNE.CZ při studiu medicíny. In Petr Sojka, Martin Kvizda. Sborník SCO 2011. 1. vyd. Brno: MUNI Press, 2011, s. 165-169. ISBN 978-80-210-5528-5.

LÍŠKA, Martin, Petr SOJKA, Michal RŮŽIČKA a Peter MRAVEC. Web Interface and Collection for Mathematical Retrieval : WebMIaS and MREC. In Petr Sojka, Thierry Bouche. DML 2011: Towards a Digital Mathematics Library. Brno: Masaryk University, 2011, s. 77-84. ISBN 978-80-210-5542-1.

KMUNÍČEK, Jan, Daniel KOUŘIL, Luděk MATYSKA, Zora STŘELCOVÁ, Petr KULHÁNEK, Jaroslav KOČA a Eric YEN. Catch-All Virtual Organizations - Solution for Heterogeneous and Disperse Grid Users Communities. In Lin, S. C.; Yen, E. Managed Grids and Cloud Systems in the Asia-Pacific Research Community. New York: Springer, 2010, s. 299-309. ISBN 978-1-4419-6468-7. Dostupné z: https://dx.doi.org/10.1007/978-1-4419-6469-4_22.

HOLUB, Petr, Miloš LIŠKA, Hana RUDOVÁ a Pavel TROUBIL. Comparison of CP and IP Techniques for Data Transfer Planning. In Proceedings of the Eleventh AI*IA Symposium on Artificial Intelligence. 2010. ISBN 978-88-904924-1-9.

GOLEMBIOVSKÝ, Tomáš a Aleš KŘENEK. Compression of Vector Field Changing in Time. In MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, s.r.o., 2010, s. 76-83. ISBN 978-80-87342-10-7.

LIŠKA, Miloš, Petr HOLUB, Andrew LAKE a John VOLLBRECHT. CoUniverse Orchestrated Collaborative Environments with Dynamic Circuit Networks. 2010 Ninth International Conference on Networks, 2010, s. 300-305. ISBN 978-0-7695-3979-9.

WELSHONS, Kenny, Patrick DORN, Andrei HUTANU, Petr HOLUB, John VOLLBRECHT a Gabrielle ALLEN. Design and Implementation of a Production Dynamically Configurable Testbed. In TG '10 Proceedings of the 2010 TeraGrid Conference. Pittsburgh, PA, USA: ACM New York, NY, USA, 2010, s. 1-8. ISBN 978-1-60558-818-6.

TROUBIL, Pavel a Petr HOLUB. Eye-Control of Videoconferencing Environment Using Common Web-Cameras. In Proceedings of the IADIS International Conferences Collaborative Technologies 2010 and Web Based Communities 2010. Freiburg: IADIS Press, 2010, s. 153-156. ISBN 978-972-8939-21-2.

SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl: enhancing trust in flexible group-to-group videoconferencing. In Proceedings of the 28th of the international conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM, 2010, s. 3607-3612. ISBN 978-1-60558-930-5.

MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In MEMICS 2010 Proceedings. first. Brno: NOVPRESS, 2010, s. 126-134. ISBN 978-80-87342-10-7.

KOUŘIL, Daniel. Grid Security Developments. Hamburg: TERENA TF-CSIRT, 2010.

ŠTĚPÁN, Jakub, Petr KULHÁNEK, Zdeněk KŘÍŽ, Jan KMUNÍČEK, Jaroslav KOČA a Luděk MATYSKA. grid-CICADA: Efficient Explorer of Conformational Space of Biomolecular Systems. In 5th EGEE User Forum. 2010.

PETERLÍK, Igor, Luděk MATYSKA a Jiří FILIPOVIČ. Haptic Interaction with Complex Models Based on Precomputations. Online. In Advances in Haptics. Vukovar (Croatia): IN-TECH, 2010, s. 333-356. ISBN 978-953-307-093-3.

HOLUB, Petr. H.323 for Medical Application and Virtual Laboratories. In 3rd E2EWorkshop on Provisioning E2E Services. 2010.

DRAŠAR, Martin, Martin JUŘEN, Daniel KOUŘIL, Pavel MINAŘÍK, Michal PROCHÁZKA a Jan VYKOPAL. Intelligent logging server. Warsaw: SECURE 2010, 2010.

MATYSKA, Luděk, Michal KOZUBEK, Tomáš VOJNAR, Pavel ZEMČÍK a David ANTOŠ. MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS s.r.o., 2010, 213 s. ISBN 978-80-87342-10-7.

KŘENKOVÁ, Ivana, David ANTOŠ a Luděk MATYSKA. MetaCentrum Yearbook 2009. first. Prague: CESNET, z. s. p. o., 2010, 172 s. ISBN 978-80-904173-7-3.

KMUNÍČEK, Jan, Martin KUBA, Ivana KŘENKOVÁ a David ANTOŠ. MetaCentrum—e-Infrastructure for Computational and Data Challenges. Nové Hrady, 2010.

BARTOŠEK, Miroslav, Petr KOVÁŘ a Michal RŮŽIČKA. Metadata Editor EuDML. 2010.

HOLUB, Petr. Network-Based Collaborative Environments. In Informatics Colloquium FI MU. 2010.

KREJČÍŘ, Vlastimil a Ľuboš KOHÚT. Programování v systému DSpace (API, Manakin/XMLUI). 2010.

ANTOŠ, David, Martin OSOVSKÝ, Marek SAITL a Václav LORENC. Ráno Eduroamisto, večer takisto. 2010, 6 s. Zpravodaj ÚVT MU, roč. XXI, č. 2. ISSN 1212-0901.

COLLING, David, Janusz MARTYNIAK, Andrew MCGOUGH, Aleš KŘENEK, Jiří SITERA, Miloš MULAČ a František DVOŘÁK. Real Time Monitor of Grid job executions. Journal of Physics: Conference Series. 2010, roč. 219, č. 6, 9 s. ISSN 1742-6596.

PETERLÍK, Igor, Mert SEDEF, Cagatay BASDOGAN a Luděk MATYSKA. Real-time visio-haptic interaction with static soft tissue models having geometric and material nonlinearity. Computers & Graphics. Elsevier, 2010, roč. 34, č. 1, s. 43-54. ISSN 0097-8493.

BOUCHE, Thierry, Hugo MANGUINHAS, Claude GOUTORBE, Nicolas HOUILLON, Rosa DE LA VIESCA, Helena FERNANDEZ, Jean-Paul JORDA, Marie-Louise CHAIX, Katarzyna ZAMLYNSKA, Wojtek SYLWESTRZAK, Michael JOST, Radoslav PAVLOV, Jiří RÁKOSNÍK, Miroslav BARTOŠEK, Petr SOJKA, Ioannis KARYDIS a Thomas FISCHER. Report on available collections and metadata: Deliverable 3.1 of project EuDML. 1.6 as of 5th August 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 40 s. Deliverable D3.1.

KREJČÍŘ, Vlastimil. Shibboleth v systému DSpace. In Shibboleth v praxi. 2010.

ŠUSTR, Zdeněk, Jiří SITERA, František DVOŘÁK, Jiří FILIPOVIČ, Daniel KOUŘIL, Aleš KŘENEK, Luděk MATYSKA, Miloš MULAČ, Jan POSPÍŠIL, Miroslav RUDA, Zdeněk SALVET a Michal VOCŮ. Something you may have wanted to know about L&B. Journal of Physics: Conference Series. 2010, roč. 219, č. 6, 10 s. ISSN 1742-6596.

SAMEC, Martin, Jaromír LEBEDA a Petr KOVÁCS. Technologický pasport MU. 2010.

HRBATÝ, Dušan, Jakub MAREČEK, Michal VÁVRA, Tomáš REBOK, Eva HLADKÁ, Jan DOLEČEK, Martin JANTOŠOVIČ, František KOBZÍK, Michal KOHUT, Vít RUSŇÁK, Martin SKALA, Daniel STIBOR a Jiří ŠKROBÁK. Testy softwarových VoIP klientů. Brno: Laboratoř pokročilých síťových technologií FI MU, 2010.

JOST, Michael, Thierry BOUCHE, Claude GOUTORBE, Jean-Paul JORDA, Miroslav BARTOŠEK, Peter STANCHEV a Michał POLITOWSKI. The EuDML metadata schema: Deliverable D3.2 of project EuDML. 1.6 as of 15th December 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 31 s. Deliverable D3.2.

HOLUB, Petr. Unassisted Lecture Recording at Masaryk University. In 3rd TF-Media task force meeting. 2010.

PROCHÁZKA, Michal, Daniel KOUŘIL a Luděk MATYSKA. User Centric Authentication for Web Applications. In Proceedings of the 2010 International Symposium on Collaborative Technologies and Systems. Chicago, USA: IEEE, 2010, s. 67-74. ISBN 978-1-4244-6620-7.

RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK a Petr HOLUB. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI. In Cracow Grid Workshop '09. Krakow: Academic Computer Centre CYFRONET AGH, 2010, s. 64-71. ISBN 978-83-61433-01-9.

HOLUB, Petr a Eva HLADKÁ. Virtual Multicast. In Trends in Telecommunications Technologies. 1. vyd. Vukovar, Croatia: IN-TECH, 2010, s. 63-85. ISBN 978-953-307-072-8.

LIŠKA, Miloš a Petr HOLUB. CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In The Eighth International Conference on Networks ICN 2009. Cancún, Mexico: IARIA, 2009, s. 259-265. ISBN 978-0-7695-3552-4.

SOJKA, Petr, Jiří RÁKOSNÍK, Miroslav BARTOŠEK, Martin LHOTÁK a Jiří VESELÝ. Czech Digital Mathematics Library -- DML-CZ. 2009.

RÁKOSNÍK, Jiří, Martin LHOTÁK, Miroslav BARTOŠEK, Petr SOJKA a Oldřich ULRYCH. Česká digitální matematická knihovna - DML-CZ. 2009.

REBOK, Tomáš. DiProNN: Distributed Programmable Network Node. Brno: Faculty of Informatics, Masaryk University, 2009, 200 s. Ph.D. Thesis.

HEJTMÁNEK, Lukáš a Josef FEIT. Distribuované zpracování obrazu pro virtuální mikroskop. Brno: Masarykova univerzita, 2009. Mefanet 2009. ISBN 978-80-7392-118-7.

HOLUB, Petr a David ANTOŠ. e-Infrastruktury - komplexní nástroje pro podporu vědy, výzkumu i výuky. Masarykova univerzita, 2009, 7 s. Zpravodaj ÚVT MU, 19, 4, 1-6. ISSN 1212-0901.

PÚDELKA, Ivan a Tomáš REBOK. Enhanced UDP Packet Reflector -- Erum. 2009.

KOUŘIL, Daniel a Michal PROCHÁZKA. Experiences with Massive PKI Deployment and Usage. In Security adn Protection of Information. 2009. vyd. Brno, 2009, s. 44-52. ISBN 978807231641.

KOUŘIL, Daniel a Michal PROCHÁZKA. Fault-tolerant Access Control in Distributed Environment the MetaCentrum Authorization Infrastructure. CESNET, 2009. Technical report.

PROCHÁZKA, Michal, Daniel KOUŘIL a Tomáš KUBINA. Framework for non-Web application integration - CAT. In TERENA EuroCAMP. 2009.

SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl : A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Human-Computer Interaction – INTERACT 2009, Lecture Notes in Computer Science Volume 5727. 2009. vyd. Uppsala, Sweden: Springer Berlin / Heidelberg, 2009, s. 165-168. ISBN 978-3-642-03657-6. Dostupné z: https://dx.doi.org/10.1007/978-3-642-03658-3_22.

TROUBIL, Pavel, Petr SLOVÁK, Milan KABÁT a Petr HOLUB. GColl - group-to-group videoconferencing environment. 2009.

SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Annual Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2009. ISBN 978-80-87342-04-6.

SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl Group-to-group Videoconferencing System: Design and First Experiences. In The 5th International ICST Conference on Collaborative Computing: Networking, Applications and Worksharing. Neuveden: Neuveden, 2009, 9 s. ISBN 978-963-9799-76-9.

PROCHÁZKA, Michal, Daniel KOUŘIL a Tomáš KUBINA. Grid-enabled Desktop. In TAGPMA Federated Identity Workshop. 2009.

STŘELCOVÁ, Zora, Petr KULHÁNEK, Jan KMUNÍČEK, Jaroslav KOČA a Luděk MATYSKA. Implementation and Testing of Multiple Walkers Approach Based Free Energy Calculations in the Grid Environment. In GCCP Proceedings. Bratislava, Slovakia: Institute of Informatics SAS, 2009, s. 29-36, 7 s. ISBN 978-80-970145-1-3.

HOLUB, Petr, Miloš LIŠKA, Andrew LAKE, Chris TRACY, Tom LEHMAN, John VOLLBRECHT a Brian CASHMAN. Interfacing CoUniverse & Internet2 DCN. In Internet2 Spring Member Meeting 2009. 2009.

HOLUB, Petr, Miloš LIŠKA, Andrew LAKE a John VOLLBRECHT. Interfacing CoUniverse & Internet2 DCN. In Internet2 Joint Tech Meeting 2009. 2009.

PROCHÁZKA, Michal, Petr HOLUB a Eva HLADKÁ. jSon: Network of Active Elements with Peer-to-Peer Control Plane. In The Eighth International Conference on Networks ICN 2009. Cancun, Mexico: IARIA, 2009, 8 s. ISBN 978-0-7695-3552-4.

KOUŘIL, Daniel a Matej PRIŠŤÁK. Kerberos Authentication in Apache. In AFS & Kerberos Best Practices Workshop. 2009.

KREJČÍŘ, Vlastimil. Konfigurace OAI-PMH v DSpace. In 2. setkání českých uživatelů systému DSpace. 2009.

STŘELCOVÁ, Zora, Petr KULHÁNEK, Jan KMUNÍČEK, Jaroslav KOČA a Luděk MATYSKA. Large-Scale Free Energy Calculations as Showcase of Worldwide Grid Usability. In 4th EGEE User Forum/OGF 25 and OGF Europe's 2nd International Event. 2009.

VOJNAR, Tomáš, Petr HLINĚNÝ, Václav MATYÁŠ a David ANTOŠ. MEMICS 2009, Fifth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. first. Brno: NOVPRESS s.r.o., nám. Republiky 725/15, 614 00 Brno, 2009, 258 s. ISBN 978-80-87342-04-6.

ANTOŠ, David, Jiří SITERA, Luděk MATYSKA a Petr HOLUB. MetaCenter Virtual Networks. In Cracow Grid Workshop 2008. Cracow, Poland: Cyfronet AGH, Kraków, Poland, 2009, s. 86-93. ISBN 978-83-61433-00-2.

ŠUSTR, Zdeněk, Jiří SITERA, Miloš MULAČ, Miroslav RUDA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB, Zdeněk SALVET a Luděk MATYSKA. MetaCentrum, the Czech Virtualized NGI. 2009.

BARTOŠEK, Miroslav, Petr KOVÁŘ a Martin ŠÁRFY. Metadatový editor. 2009.

KOUŘIL, Daniel, Michal PROCHÁZKA, Tomáš KUBINA, Jeffrey ALTMAN a Asanka HERATH. Network Identity Manager Providers. In AFS & Kerberos Best Practices Workshop. 2009.

FILIPOVIČ, Jiří, Igor PETERLÍK a Luděk MATYSKA. On-Line Precomputation Algorithm for Real-Time Haptic Interaction with Non-Linear Deformable Bodies. In Third Joint EuroHaptics Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems. Salt Lake City, Utah, USA: The Institute of Electrical and Electronics Engineers, 2009, s. 24 - 29. ISBN 978-1-4244-3858-7.

BARTOŠEK, Miroslav, Vlastimil KREJČÍŘ a Martin ŠÁRFY. Prezentační systém digitální knihovny DML-CZ. 2009.

ČEŠKA, Milan, Zdeněk KOTÁSEK, Mojmír KŘETÍNSKÝ, Luděk MATYSKA a Tomáš VOJNAR. Proceedings of the International Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2008) - selected papers. Electronic Notes in Theoretical Computer Science. Amsterdam, The Netherlands: Elsevier B.V., 2009, roč. 251, 96 s. ISSN 1571-0661.

REBOK, Tomáš, Martin BENEŠ a Milan KABÁT. Robust Audio Tool (RAT) Supporting Separate Recording and Playback Audio Devices Selection. 2009.

ANTOŠ, David, Lukáš HEJTMÁNEK, Jiří CHUDOBA, Daniel KOUŘIL, Luděk MATYSKA a Michal PROCHÁZKA. Správa dat v gridových systémech. In Proceedings of the Annual Database Conference DATAKON 2009. 1. vyd. Praha: Oeconomica, Praha, 2009, s. 251-265. ISBN 978-80-245-1568-7.

LIŠKA, Miloš, Jiří MATELA a Lukáš HEJTMÁNEK. UltraGrid2K. 2009.

HOLUB, Petr, Miloš LIŠKA, Jiří MATELA, Martin BENEŠ a Ian N. WESLEY-SMITH. UltraGrid-20090105. 2009.

KOUŘIL, Daniel a Michal PROCHÁZKA. Úskalí PKI v praxi - část I. DSM. Praha: Tate International, s.r.o., 2009, XIII, č. 1. ISSN 1211-8737.

KOUŘIL, Daniel a Michal PROCHÁZKA. Úskalí PKI v praxi - část II. DSM. Praha: Tate International, s.r.o., 2009, XIII, č. 2, s. 40-44. ISSN 1211-8737.

ANTOŠ, David, Luděk MATYSKA, Petr HOLUB a Jiří SITERA. VirtCloud: Virtual Network for User-controlled Virtual Clusters. 2009.

ANTOŠ, David, Luděk MATYSKA, Petr HOLUB a Jiří SITERA. VirtCloud: Virtualising Network for Grid Environments--First Experiences. In The 23rd IEEE International Conference on Advanced Information Networking and Applications AINA 2009. Bradford, UK: IEEE Comp. Soc., 2009, s. 876-883. ISBN 978-1-4244-4000-9.

RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB a Miloš MULAČ. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI; CESNET technical report 17/2009. 2009.

ANTOŠ, David. Virtualizace v gridových infrastrukturách. 2009.

SITERA, Jiří a David ANTOŠ. Virtuální grid: virtualizace krátí cestu do MetaCentra. Brno: CPress Media, a. s., 2009, 2 s. Connect! 7-8/2009, roč. XIV. ISSN 1211-3085.

VOJTĚCH, Josef, Miloslav HŮLA, Jan RADIL, Miroslav KARÁSEK, Stanislav ŠÍMA, Jan NEJMAN a Petr HOLUB. Zařízení pro skupinové vysílání optických signálů v Internetu a jiných sítích. 2009. Patent. Číslo: 300811. Vydavatel: Úřad průmyslového vlastnictví. Místo vydání: Praha. Název vlastníka: CESNET Zájmové sdružení právnických osob, Praha 6, CZ. Datum registrace: 4. 12. 2007. Datum přijetí: 2. 7. 2009.

PROCHÁZKA, Michal, Daniel KOUŘIL, Luděk MATYSKA, Tomáš KUBINA a Lukáš SPURNÝ. A Federated Framework for Secure Collaborative Systems. In EUNIS 2008 VISION IT, Visions for IT in Higher Education. Aarhus, Denmark: University of Aarhus, 2008, 9 s. ISBN 978-87-91234-56-9.

PROCHÁZKA, Michal a Daniel KOUŘIL. A federated framework for secure videoconference. Stockholm, Sweden: Terena EuroCamp, 2008.

KLUSÁČEK, Dalibor, Hana RUDOVÁ a Luděk MATYSKA. Alea - Grid Scheduling Simulation Environment. 2008.

KLUSÁČEK, Dalibor, Luděk MATYSKA a Hana RUDOVÁ. Alea - Grid Scheduling Simulation Environment. In Parallel Processing and Applied Mathematics. Heidelberg, Germany: Springer-Verlag, Lecture Notes in Computer Science 4967, 2008, s. 1029-1038. ISBN 978-3-540-68105-2.

KREJČÍŘ, Vlastimil. Building the Czech Digital Mathematics Library upon DSpace System. In Petr Sojka. DML 2008 : Towards Digital Mathematics Library. Brno: Masaryk University, 2008, s. 117-126, 9 s. ISBN 978-80-210-4658-0.

HOLUB, Petr a Miloš LIŠKA. CoUniverse. 2008.

LIŠKA, Miloš a Petr HOLUB. CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In Lecture Notes in Computer Science vol. 5415 Euro-Par 2008 Workshops - Parallel Processing. Las Palmas de Gran Canaria, Spain: Springer Berlin / Heidelberg, 2008, s. 339-351, 12 s. ISBN 978-3-642-00954-9.

BARTOŠEK, Miroslav. Česká digitální matematická knihovna. In INFORUM 2008: 14. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2008, 11 s. ISSN 1801-2213.

REBOK, Tomáš a Petr HOLUB. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing. In Networking Studies II : Selected Technical Reports. Praha: CESNET z.s.p.o., 2008, s. 147-169. ISBN 978-80-254-2151-2.

BARTOŠEK, Miroslav, Petr KOVÁŘ a Martin ŠÁRFY. DML-CZ Metadata Editor. In Towards Digital Mathematics Library. Brno: Masaryk University, 2008, s. 139-151. ISBN 978-80-210-4658-0.

BARTOŠEK, Miroslav, Martin LHOTÁK, Jiří RÁKOSNÍK, Petr SOJKA a Martin ŠÁRFY. DML-CZ: The Objectives and the First Steps. In Communicating Mathematics in the Digital Era. London: A.K. Peters Ltd., Transatlantic Publishers Group, 2008, s. 75-86, 11 s. Sv. 1. ISBN 9781568814100.

KREJČÍŘ, Vlastimil. DML-CZ v systému DSpace. In 1. setkání českých uživatelů systému DSpace. 2008.

KOUŘIL, Daniel. Easing access to Grids using identity federations. Dublin, Ireland: TERENA 7th NRENs and Grids Workshop, 2008.