Výpis publikací

ADAM, Jan, Zdeněk KŘÍŽ, Martin PROKOP, Thomais CHATZIPAVLOU, Petros ZOTOS, Jaroslav KOČA a Michaela WIMMEROVÁ. CRACKING THE LECTIN CODE ; IN SILICO MODELING AND STRUCTURE-FUNCTIONAL STUDY OF PRINCIPLES DRIVING SUGAR PREFERENCE IN PAIIL FAMILY. In FEBS Journal. Oxford: Wiley-Blackwell, 2009, s. 12-13. ISSN 1742-464X.

ADAM, Jan, Zdeněk KŘÍŽ, Martin PROKOP, Michaela WIMMEROVÁ a Jaroslav KOČA. In silico mutagenesis and docking studies of Pseudomonas aeruginosa lectin PA-IIL - predicting binding modes and energies. Journal of Chemical Information and Modeling. 2008, roč. 48, č. 11, s. 2234-2242, 8 s. ISSN 1549-9596.

BLANCHARD, Bertrand, Alessandra NURISSO, Emilie HOLLWILLE, Cecile TETAUD, Joele WIELLS, Martina POKORNÁ, Michaela WIMMEROVÁ, Annabelle VARROTTE a Anne IMBERTY. Structural Basis of the Preferential Binding for Globo-Series Glycosphingolipids Displayed by Pseudomonas aeruginosa Lectin I. Journal of Molecular Biology. Amsterdam: Elsevier, 2008, roč. 383, č. 4, s. 837-853. ISSN 0022-2836.

ADAM, Jan, Zdeněk KŘÍŽ, Lenka MALINOVSKÁ, Emily LAMEIGNERE, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Studying the binding properties of BclA lectin - experiment and modeling. In FEBS Journal. OXFORD: BLACKWELL PUBLISHING, 2008, s. 175-175. ISSN 1742-464X.

ADAM, Jan, Martina POKORNÁ, Zdeněk KŘÍŽ, Anne IMBERTY, Charles SABIN, Jaroslav KOČA a Michaela WIMMEROVÁ. Computational chemistry as a helpful tool for biochemist - structure-functional study and correlation en route to protein engineering. In Materials Structure, vol. 14, no. 1 (2007), 6th Discussions in Structural Molecular Biology. Prague: Czech and Slovak Crystallographic Association, 2007, 1 s. ISSN 1211-5894.

MISHRA, Navnit Kumar, Petr KULHÁNEK, Zdenek KRIZ, Michaela WIMMEROVA a Jaroslav KOCA. Computational Studies on PA-IIL Lectin-Carbohydrate Interactions. In Materials Structure in Chemistry, Biology, Physics and Technology. 2007. ISSN 1211-5894.

FADRNÁ, Eva, Jiří FUKAL a Jaroslav KOČA. Computational study of restriction endonuclease HincII. In Materials Structure, vol. 14, no. 1 (2007), 6th Discussions in Structural Molecular Biology. Nové Hrady, Czech Republic: Academic and University Center, Nové Hrady, 2007, s. 33-33.

VONDRÁŠEK, Jiří, Tomáš KUBAŘ, Francis E. JENNEY, JR., Michael W.W. ADAMS, Milan KOŽÍŠEK, Jiří ČERNÝ, Vladimír SKLENÁŘ a Pavel HOBZA. Dispersive interactions govern strong thermal stability of a protein. Chemistry- A European Journal. 2007, roč. 13, č. 32, s. 9022-9027. ISSN 0947-6539.

ADAM, Jan, Martina POKORNÁ, Nikola KOSTLÁNOVÁ, Ondřej ŠULÁK, Zdeněk KŘÍŽ, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Molecular modeling as a biochemist's best friend - structure-functional and computational analysis of lectin-saccharide interaction on the way to protein enginneering. In Cukrblik 2007 : Current Chemistry and Biochemistry of Saccharides. Prague: Institute of Chemical Technology, 2007, s. 6-6. ISBN 978-80-7080-006-5.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Martin PROKOP, Zdeněk KŘÍŽ, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Molecular modeling in hands of protein engineers - the lectin-saccharide interaction study. In FEBS Journal 274 (suppl. 1), 32th FEBS Congress "Molecular Machines". Cambridge: Blackwell Publishing, 2007, s. 263-263. ISSN 1742-464X.

ADAM, Jan, Martina POKORNÁ, Martin PROKOP, Zdeněk KŘÍŽ, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Mutagenesis of PA-IIL and related affinity changes - structure-functional, computational and thermodynamic study. In Young Scientist Forum 'Molecular Networks'. 2007.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Martin PROKOP, Zdeněk KŘÍŽ, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Mutagenesis of PA-IIL and related affinity changes - molecular modeling in service of protein engineering. In Konference Grantové Agentury České republiky - Strukturní biofyzika makromolekul II. Brno: Biofyzikální ústav AV ČR a Masarykova univerzita, 2007, s. 25.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Zdeněk KŘÍŽ, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Protein Engineering and Molecular Modeling 'IN CAPSULE' - Computer-Assisted Prediction of SUgar-LEctin INteractions. Structure-functional and computational study of bacterial lectin PA-IIL. In International Congress of Young Chemists YoungChem 2007. Warsaw: Chemical Scientific Society Flogiston, 2007, s. 68. ISBN 978-83-61037-16-3.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Zdeněk KŘÍŽ, Anne IMBERTY, Michaela WIMMEROVÁ a Jaroslav KOČA. Structure as a key to function: protein engineering and molecular modeling of lectin-saccharide interactions. In Synchrotron Facilities for the Development of Science and Technology in Central and Eastern Europe. Brno: Biofyzikální ústav AV ČR, 2007, s. 8-9.

ADAM, Jan, Martina POKORNÁ, Zdeněk KŘÍŽ, Anne IMBERTY, Charles SABIN, Jaroslav KOČA a Michaela WIMMEROVÁ. Structure-functional study of PA-IIL mutants: employing computational chemistry as a biomolecular chemist's tool. In Sborník konference XI. Setkání biochemiků a molekulárních biologů. Brno: Masarykova Univerzita, 2007, s. 17. ISBN 978-80-210-4234-6.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Zdeněk KŘÍŽ, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Strukturně funkční studie afinitních změn v lektin sacharidových systémech: počítačová chemie ve službách proteinového inženýrství. In Chem. Listy 101, 425–465 (2007) - VII. Mezioborové setkání mladých biologů, biochemiků a chemiků. Praha: Česká společnost chemická, 2007, s. 427-427. ISSN 0009-2770.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Zdeněk KŘÍŽ, Anne IMBERTY, Jaroslav KOČA a Michaela WIMMEROVÁ. Utilizing Computational Chemistry for protein engineering - study of lectin-saccharide interactions. In European Biophysics Journal 36 (suppl. 1), 6th EBSA Biophysics Congress. London: Springer, 2007, s. 111-111. ISSN 0175-7571.

BOTTE, Cyrille, Charlotte JEANNEAU, Lenka ŠNAJDROVÁ, Olivier BASTIEN, Anne IMBERTY, Christelle BRETON a Eric MARECHAL. Molecular modeling and site-directed mutagenesis of plant chloroplast monogalactosyldiacylglycerol synthase reveal critical residues for activity. J. Biol. Chem. 2005, roč. 280, č. 41, s. 34691-34701. ISSN 0021-9258.

NAVRÁTILOVÁ, Hana, Radka OPATŘILOVÁ, Zdeněk KŘÍŽ a Jaroslav KOČA. Enantioselective chromatography and molecular modeling of novel aryloxyaminopropan-2-ols with the alkyl carbamate function. Chirality. 2004, roč. 16, č. 3, s. 139-146. ISSN 0899-0042.

KULHÁNEK, Petr, Milan POTÁČEK a Jaroslav KOČA. Quantum-chemical insight into mechanism of combined intra-intermolecular cycloaddition. Collection of Czechoslovak Chemical Communications. Prague, 2004, roč. 69/2004, č. 1, s. 231-241. ISSN 0010-0765.

KŘÍŽ, Zdeněk, Jaroslav KOČA, Anne IMBERTY, Aurelia CHARLOT a Rachel AUZELY-VELTY. Investigation of the complexation of (+)-catechin by b-cyclodextrin by a combination of NMR, microcalorimetry and molecular modeling techniques. Organic and Biomolecular Chemistry. Royal Society of Chemistry, 2003, roč. 1, č. 14, s. 2590-2595. ISSN 1477-0520.

KULHÁNEK, Petr a Jaroslav KOČA. NEMESIS - molecular modelling package. In Program of the CPMD 2003 conference. Manno, Switzerland: CPMD Group, 2003, s. 56-56.

KOČA, Jaroslav, Zdeněk KŘÍŽ, Martin LUDIN a Anne IMBERTY. Pokroky v počítačovém modelování interakcí dvou a více molekul. Příklady z oblasti cyklodextrinu. In Chemické listy. Praha: Česká společnost chemická, 2003, s. 1113-1114.

KŘÍŽ, Zdeněk, Michal OTYEPKA a Jaroslav KOČA. Molecular Modeling of Peptides and Proteins at National Centre for Biomolecular Research (NCBR). In Materials Structure in Chemistry, Biology, Physics and Technology. Praha: 1. setkani ceskych a slovenskych strukturnich biologu, 2002, s. 41-42.

JANDERKA, Pavel. Molekulové modelování a teoretická chemie na PC. Chemické listy. Praha: Česká společnost chemická, 2000, roč. 94, č. 1, s. 28-38. ISSN 0009-2770.