Výpis publikací

ADAM, Jan, Zdeněk KŘÍŽ, Martin PROKOP, Michaela WIMMEROVÁ a Jaroslav KOČA. Deciphering the lectin code by means of molecular modelling correlated with structure-functional experimental studies. In XIII. Setkání biochemiků a molekulárních biologů. Brno: Masarykova Univerzita, 2009, s. 3. ISBN 978-80-210-4830-0.

PROKOP, Martin, Jan ADAM, Zdeněk KŘÍŽ, Michaela WIMMEROVÁ a Jaroslav KOČA. TRITON 4 : software for ligand-binding protein engineering. 2009.

HOLUB, Peter, Martina PAVLOVÁ, Martin KLVAŇA, Zbyněk PROKOP, Radka CHALOUPKOVÁ, Aaron OAKLEY, M. TSUDA, Yuji NAGATA a Jiří DAMBORSKÝ. Protein Engineering of Haloalkane Dehalogenases: Towards the Change of Reaction Mechanism. 2008.

PROKOP, Martin, Jan ADAM, Zdeněk KŘÍŽ, Michaela WIMMEROVÁ a Jaroslav KOČA. TRITON: a graphical tool for ligand-binding protein engineering. Bioinformatics. Oxford University Press, 2008, roč. 24, č. 17, s. 1955-1956. ISSN 1367-4803.

ADAM, Jan, Martina POKORNÁ, Charles SABIN, Edward P. MITCHELL, Anne IMBERTY a Michaela WIMMEROVÁ. Engineering of PA-IIL lectin from Pseudomonas aeruginosa - Unravelling the role of the specificity loop for sugar preference. BMC Structural Biology. 2007, roč. 7, č. 36, s. 1-13. ISSN 1472-6807.

MONINCOVÁ, Marta, Yuji NAGATA, Radka CHALOUPKOVÁ, Zbyněk PROKOP, Andrea FOŘTOVÁ, Martina PAVLOVÁ, Masataka TSUDA a Jiří DAMBORSKÝ. Protein engineering of haloalkane dehalogenase LinB: reconstruction of active site and modification of entrance tunnel. In Book of Abstracts, 10th International Symposium of the Genetics of Industrial Microorganisms. 1. vyd. Praha: Institute of Microbiology ASCR, 2006, s. 160-161. ISBN 80-239-7323-1.

PROKOP, Martin, Jiří DAMBORSKY a Jaroslav KOČA. TRITON: graphic software for modelling protein mutants and calculation reaction pathways. In Modelling and Design of Molecular Materials, Program-Book of Abstract. Wroclaw: University of Wroclav, 2004, s. L-28, 1 s.

BOSMA, Tjibbe, Jiří DAMBORSKÝ, Gerhard STUCKI a Dick JANSSEN. Biodegradation of 1,2,3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene. Applied and Environmental Microbiology. 2002, roč. 68, č. 7, s. 3582-3587. ISSN 1098-5336.

OAKLEY, Aaron, Zbyněk PROKOP, Michal BOHÁČ, Jan KMUNÍČEK, Tomáš JEDLIČKA, Marta MONINCOVÁ, Ivana KUTÁ-SMATANOVÁ, Yuji NAGATA, Jiří DAMBORSKÝ a Matthew WILCE. Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product and water mediated inhibition. Biochemistry. 2002, roč. 41, č. 15, s. 4847-4855. ISSN 0006-2960.

BOHÁČ, Michal, Yuji NAGATA, Zbyněk PROKOP, Martin PROKOP, Marta MONINCOVÁ, Masataka TSUDA, Jaroslav KOČA a Jiri DAMBORSKÝ. Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis. Biochemistry. 2002, roč. 41, č. 48, s. 14272-14280. ISSN 0006-2960.

DAMBORSKY, Jiří, Andrea JESENSKÁ, Zbyněk PROKOP, Jan KMUNÍČEK, Michal BOHÁČ, Martin PROKOP, Jana SÝKOROVÁ, Radka CHALOUPKOVÁ, Martina PAVLOVÁ, Tomáš JEDLIČKA, Marta MONINCOVÁ, Michal STROUHAL, Martina BUDOVÁ, Jaroslav KOČA, Michal OTYEPKA, Yuji NAGATA a Matthew WILCE. Protein engineering of dehalogenating enzymes. In Materials in Structure Chemistry, Biology, Physics and Technology. Praha: Krystalografická společnost, 2002, s. 34. ISSN 1211-5894.

DAMBORSKÝ, Jiří, Martin PROKOP a Jaroslav KOČA. TRITON: graphic software for rational engineering of enzymes. Trends in Biochemical Sciences. 2001, roč. 28, č. 1, s. 71-73.