Výpis publikací

BALKOVÁ, Darina; Kateřina MALÁ; Jan HEJÁTKO; Klara PANZAROVA; Lamis ABDELHAKIM; Barbora PLESKACOVA a Markéta ŠÁMALOVÁ. Differential expression and localization of expansins in Arabidopsis shoots: implications for cell wall dynamics and drought tolerance. Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2025, roč. 16, February, s. 1-18. ISSN 1664-462X. Dostupné z: https://doi.org/10.3389/fpls.2025.1546819.

SAMMUT, Stephanie; Katarína GREŠOVÁ; Dimosthenis TZIMOTOUDIS; Eva MARŠÁLKOVÁ; David ČECHÁK a Panagiotis ALEXIOU. miRBench: novel benchmark datasets for microRNA binding site prediction that mitigate against prevalent microRNA frequency class bias. Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. OXFORD UNIV PRESS, 2025, roč. 41, č. 1, s. 542-551, 11 s. ISSN 1367-4803. Dostupné z: https://doi.org/10.1093/bioinformatics/btaf233.

GLEIXNER, Sophie; Ingrid ZAHN; Jana DIETRICH; Swati SINGH; Alice DROBNY; Yanni SCHNEIDER; Raphael SCHWENDNER; Eileen SOCHER; Nicolas BLAVET; Lars BRAEUER; Antoniu-Oreste GOSTIAN; Matthias BALK; Gundula SCHULZE-TANZIL; Claudia GUENTHER; Friedrich PAULSEN a Philipp ARNOLD. A New Immortalized Human Lacrimal Gland Cell Line. Advances in Fuel Cells. BASEL: Elsevier, 2024, roč. 13, č. 7, s. 1-18. ISSN 2073-4409. Dostupné z: https://doi.org/10.3390/cells13070622.

NING, Jing; Clemens P SPIELVOGEL; David HABERL; Karolína TRACHTOVÁ; Stefan STOIBER; Sazan RASUL; Vojtěch BYSTRÝ; Gabriel WASINGER; Pascal BALTZER; Elisabeth GURNHOFER; Gerald TIMELTHALER; Michaela SCHLEDERER; Laszlo PAPP; Helga SCHACHNER; Thomas HELBICH; Markus HARTENBACH; Bernhard GRUBMUELLER; Shahrokh F SHARIAT; Marcus HACKER; Alexander HAUG a Lukas KENNER. A novel assessment of whole-mount Gleason grading in prostate cancer to identify candidates for radical prostatectomy: a machine learning-based multiomics. Theranostics. Lake Haven: Ivyspring International Publisher, 2024, roč. 14, č. 12, s. 4570-4581. ISSN 1838-7640. Dostupné z: https://doi.org/10.7150/thno.96921.

STERNBERG, Christina; Martin RAIGEL; Tanja LIMBERGER; Karolína TRACHTOVÁ; Michaela SCHLEDERER; Desiree LINDNER; Petra KODAJOVA; Jiaye YANG; Roman ZIEGLER; Jessica KALLA; Stefan STOIBER; Saptaswa DEY; Daniela ZWOLANEK; Heidi A NEUBAUER; Monika OBERHUBER; Torben REDMER; Václav HEJRET; Boris TICHÝ; Martina TOMBERGER; Nora S HARBUSCH; Jan PENCIK; Simone TANGERMANN; Vojtěch BYSTRÝ; Jenny L PERSSON; Gerda EGGER; Šárka POSPÍŠILOVÁ; Robert EFERL; Peter WOLF; Felix STERNBERG; Sandra HOGLER; Sabine LAGGER; Stefan ROSE-JOHN a Lukas KENNER. Cell-autonomous IL6ST activation suppresses prostate cancer development via STAT3/ARF/p53-driven senescence and confers an immune-active tumor microenvironment. Molecular Cancer. London: BMC, 2024, roč. 23, č. 1, s. 1-22. ISSN 1476-4598. Dostupné z: https://doi.org/10.1186/s12943-024-02114-8.

HOŠKOVÁ, Kateřina; Šárka FAJTLOVÁ; Pavel PLEVKA; Michal MIKL; Milan EŠNER; Radka SVOBODOVÁ a Boris TICHÝ. CF Day 2023. 2024.

JUGAS, Robin; Petra POKORNÁ; Soňa ADAMCOVÁ; Kateřina KOŽELKOVÁ; Dana KNOFLÍČKOVÁ; Hana PÁLOVÁ; Jaroslav ŠTĚRBA a Ondřej SLABÝ. Dataset of DNA methylation profiles of 189 pediatric central nervous system, soft tissue, and bone tumors. Data in Brief. Amsterdam: Elsevier, 2024, roč. 55, August 2024, s. 1-8. ISSN 2352-3409. Dostupné z: https://doi.org/10.1016/j.dib.2024.110590.

SLABÁ, Kateřina; Petra POKORNÁ; Robin JUGAS; Hana PÁLOVÁ; Dagmar PROCHÁZKOVÁ; Štefánia AULICKÁ; Klára ŠPANĚLOVÁ; Pavlína DANHOFER; Ondřej HORÁK; Jana TUČKOVÁ; Petra KLEIBLOVÁ; Renata GAILLYOVÁ; Matěj HRUNKA; Martin JOUZA; Blanka PINKOVÁ; Jan PAPEŽ; Petra KONEČNÁ; Jana ZÍDKOVÁ; Petr ŠTOURAČ; Jaroslav ŠTĚRBA; Regina DEMLOVÁ; Eva DEMLOVÁ; Petr JABANDŽIEV a Ondřej SLABÝ. Diagnostic efficacy and clinical utility of whole-exome sequencing in Czech pediatric patients with rare and undiagnosed diseases. SCIENTIFIC REPORTS. BERLIN: NATURE PORTFOLIO, 2024, roč. 14, č. 1, s. 1-11. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-024-79872-4.

ONDRIŠOVÁ, Laura; Václav ŠEDA; Kryštof HLAVÁČ; Petra PAVELKOVÁ; Eva HOFERKOVÁ; Giorgia CHIODIN; Lenka KOŠŤÁLOVÁ; Gabriela MLADONICKÁ PAVLASOVÁ; Daniel FILIP; Josef VEČEŘA; Pedro FARIA ZENI; Jan OPPELT; Zuzana KAHOUNOVÁ; Rachel VICHOVA; Karel SOUČEK; Anna PANOVSKÁ; Karla PLEVOVÁ; Šárka POSPÍŠILOVÁ; Martin ŠIMKOVIČ; Filip VRBACKÝ; Daniel LYSÁK; Stacey M. FERNANDES; M.S. DAVIDS; Alba MAIQUES-DIAZ; Stella CHARALAMPOPOULOU; Jose I. MARTIN-SUBERO; Jenifer R. BROWN; Michael DOUBEK; Francesco FORCONI; Jiří MAYER a Marek MRÁZ. FoxO1/Rictor axis induces a non-genetic adaptation to Ibrutinib via Akt activation in chronic lymphocytic leukemia. The Journal of Clinical Investigation. MANCHESTER: AMER SOC CLINICAL INVESTIGATION INC, 2024, roč. 134, č. 23, s. 1-17. ISSN 0021-9738. Dostupné z: https://doi.org/10.1172/JCI173770.

VETEŠNÍKOVÁ ŠIMKOVÁ, Andrea; Kristína KŘÍŽOVÁ; Kristýna VOŘÍŠKOVÁ; Lukáš VETEŠNÍK; Václav HEJRET; Lenka GETTOVÁ; Jiří VOREL; Nikol RESLOVÁ a Vojtěch BYSTRÝ. Heterosis versus breakdown in cyprinid hybrids associated with SVCV infection revealed by transcriptome profile analysis of head kidney. Aquaculture. AMSTERDAM: ELSEVIER, 2024, roč. 578, January, s. 1-14. ISSN 0044-8486. Dostupné z: https://doi.org/10.1016/j.aquaculture.2023.740083.

ŠÁMALOVÁ, Markéta; Alesia MELNIKAVA; Kareem ELSAYAD; Alexis PEAUCELLE; Evelína GAHUROVÁ; Jaromír GUMULEC; Ioannis SPYROGLOU; Elena V ZEMLYANSKAYA; Elena V UBOGOEVA; Darina BALKOVÁ; Martin DEMKO; Nicolas BLAVET; Panagiotis ALEXIOU; Vladimir BENES; Gregory MOUILLE a Jan HEJÁTKO. Hormone-regulated expansins: Expression, localization, and cell wall biomechanics in Arabidopsis root growth. Plant Physiology. CARY: OXFORD UNIV PRESS INC, 2024, roč. 194, č. 1, s. 209-228. ISSN 0032-0889. Dostupné z: https://doi.org/10.1093/plphys/kiad228.

TRIZULJAK, Jakub; Paulína LIKAVCOVÁ; Kateřina STAŇO KOZUBÍK; Zuzana VRZALOVÁ; Jakub HYNŠT; Tereza DEISSOVÁ; Jiří ŠTIKA; Lenka RADOVÁ; Marie PRUDKOVÁ; Jana VACULOVA; Ivona BLAHÁKOVÁ; Petr SMEJKAL; Jan KAMELANDER; Šárka POSPÍŠILOVÁ a Michael DOUBEK. Impact of thrombocytopenia-associated c.-118C>T and c.-140C>G ANKRD26 5’UTR variants in three-generational pedigree. Platelets. PHILADELPHIA: TAYLOR & FRANCIS INC, 2024, roč. 35, č. 1, s. 1-6. ISSN 0953-7104. Dostupné z: https://doi.org/10.1080/09537104.2024.2388103.

NAVRKALOVÁ, Veronika; Karla PLEVOVÁ; Lenka RADOVÁ; Jakub Paweł PORC; Karol PÁL; Jitka MALČÍKOVÁ; Šárka PAVLOVÁ; Michael DOUBEK; Anna PANOVSKÁ; Jana KOTAŠKOVÁ a Šárka POSPÍŠILOVÁ. Integrative NGS testing reveals clonal dynamics of adverse genomic defects contributing to a natural progression in treatment-naïve CLL patients. British journal of haematology. Hoboken: Wiley-Blackwell, 2024, roč. 204, č. 1, s. 240-249. ISSN 0007-1048. Dostupné z: https://doi.org/10.1111/bjh.19191.

EBRAHIMI NAGHANI, Shekoufeh; Ján ŠMERINGAI; Barbora PLESKAČOVÁ; Tereza DOBISOVÁ; Klára PANZAROVÁ; Markéta PERNISOVÁ a Helene ROBERT BOISIVON. Integrative phenotyping analyses reveal the relevance of the phyB-PIF4 pathway in Arabidopsis thaliana reproductive organs at high ambient temperature. BMC PLANT BIOLOGY. ENGLAND: BMC, 2024, roč. 24, č. 1, s. 721-744. ISSN 1471-2229. Dostupné z: https://doi.org/10.1186/s12870-024-05394-w.

BOUDNÁ, Marie; Táňa MACHÁČKOVÁ; Petra VYCHYTILOVÁ; Karolína TRACHTOVÁ; Renata BARTOŠOVÁ; Tina CATELA IVKOVIĆ; Dagmar AL TUKMACHI; Robin JUGAS; Lucie PIFKOVÁ; Jana ORLÍČKOVÁ; Jan KOTOUČEK; Markéta PAVLÍKOVÁ; Milana ŠACHLOVÁ; Lucia BOHOVICOVÁ; Teodor STANĚK; Jana HALÁMKOVÁ; Igor KISS; Tomáš GROLICH; Martin SVOBODA; Zdeněk KALA; Kamila SOUČKOVÁ a Ondřej SLABÝ. Investigation of long non-coding RNAs in extracellular vesicles from low-volume blood serum specimens of colorectal cancer patients. CLINICAL AND EXPERIMENTAL MEDICINE. MILAN: SPRINGER-VERLAG ITALIA SRL, 2024, roč. 24, č. 1, s. 1-14. ISSN 1591-8890. Dostupné z: https://doi.org/10.1007/s10238-024-01323-1.

REDMER, Torben; Martin RAIGEL; Christina STERNBERG; Roman ZIEGLER; Clara PROBST; Desiree LINDNER; Astrid AUFINGER; Tanja LIMBERGER; Karolína TRACHTOVÁ; Petra KODAJOVA; Sandra HOEGLER; Michaela SCHLEDERER; Stefan STOIBER; Monika OBERHUBER; Marco BOLIS; Heidi A NEUBAUER; Sara MIRANDA; Martina TOMBERGER; Nora S HARBUSCH; Garces de los Fayos Alonso INES; Felix STERNBERG; Richard MORIGGL; Jean-Philippe THEURILLAT; Boris TICHÝ; Vojtěch BYSTRÝ; Jenny L PERSSON; Stephan MATHAS; Fritz ABERGER; Birgit STROBL; Šárka POSPÍŠILOVÁ; Olaf MERKEL; Gerda EGGER; Sabine LAGGER a Lukas KENNER. JUN mediates the senescence associated secretory phenotype and immune cell recruitment to prevent prostate cancer progression. Molecular Cancer. LONDON: BioMed Central Ltd, 2024, roč. 23, č. 1, s. 1-21. ISSN 1476-4598. Dostupné z: https://doi.org/10.1186/s12943-024-02022-x.

ZHOU, You; Miona COROVIC; Peter HOCH-KRAFT; Nathalie MEISER; Mikhail MESITOV; Nadine KOERTEL; Hannah BACK; Vries Isabel S NAARMANN-DE; Kritika Suresh KATTI; Aleš OBRDLÍK; Anke BUSCH; Christoph DIETERICH; Štěpánka VAŇÁČOVÁ; Martin HENGESBACH; Kathi ZARNACK a Julian KOENIG. m6A sites in the coding region trigger translation-dependent mRNA decay. Molecular Cell. Cambridge: Cell Press, 2024, roč. 84, č. 23, s. 1-31. ISSN 1097-2765. Dostupné z: https://doi.org/10.1016/j.molcel.2024.10.033.

POKORNÁ, Petra; Hana PÁLOVÁ; Soňa ADAMCOVÁ; Robin JUGAS; Dagmar AL TUKMACHI; Michal KÝR; Dana KNOFLÍČKOVÁ; Kateřina KOŽELKOVÁ; Vojtěch BYSTRÝ; Soňa MEJSTŘÍKOVÁ; Tomáš MERTA; Karolína TRACHTOVÁ; Eliška HLOUŠKOVÁ; Peter MÚDRY; Zdeněk PAVELKA; Viera BAJČIOVÁ; Pavel TINKA; Marie JAROŠOVÁ; Tina CATELA IVKOVIĆ; Sibylle MADLENER; Karol PÁL; Natalia STEPIEN; Lisa MAYR; Boris TICHÝ; Klára NOVÁKOVÁ; Marta JEŽOVÁ; Šárka KOZÁKOVÁ; Jitka VAŇÁČKOVÁ; Lenka RADOVÁ; Karin STEININGER; Christine HABERLER; Johannes GOJO; Jaroslav ŠTĚRBA a Ondřej SLABÝ. Real-World Performance of Integrative Clinical Genomics in Pediatric Precision Oncology. Laboratory Investigation. NEW YORK: ELSEVIER, 2024, roč. 104, č. 12, s. 1-12. ISSN 0023-6837. Dostupné z: https://doi.org/10.1016/j.labinv.2024.102161.

JACQUES, Florian; Tomáš TICHOPÁD; Martin DEMKO; Vojtěch BYSTRÝ; Kristína KŘÍŽOVÁ; Mária SEIFERTOVÁ; Kristýna VOŘÍŠKOVÁ; Md Mehedi Hasan FUAD; Lukáš VETEŠNÍK a Andrea VETEŠNÍKOVÁ ŠIMKOVÁ. Reproduction-associated pathways in females of gibel carp (Carassius gibelio) shed light on the molecular mechanisms of the coexistence of asexual and sexual reproduction. BMC Genomics. London: BioMed Central Ltd, 2024, roč. 25, č. 1, s. 1-22. ISSN 1471-2164. Dostupné z: https://doi.org/10.1186/s12864-024-10462-4.

HOFERKOVÁ, Eva; Václav ŠEDA; Soňa CESNÁRIKOVÁ; Jan VERNER; Tomáš LOJA; Květoslava MATULOVÁ; Hana SKUHROVÁ FRANCOVÁ; Eva ONDROUŠKOVÁ; Daniel FILIP; Nicolas BLAVET; Miroslav BOUDNÝ; Gabriela MLADONICKÁ PAVLASOVÁ; Josef VEČEŘA; Laura ONDRIŠOVÁ; Petra PAVELKOVÁ; Kryštof HLAVÁČ; Lenka KOŠŤÁLOVÁ; Androniki MICHAELOU; Šárka POSPÍŠILOVÁ; Jana DORAZILOVÁ; Václav CHOCHOLA; Josef JAROŠ; Michael DOUBEK; Marie JAROŠOVÁ; Aleš HAMPL; Lucy VOJTOVÁ; Leoš KŘEN; Jiří MAYER a Marek MRÁZ. Stromal cells engineered to express T cell factors induce robust CLL cell proliferation in vitro and in PDX co-transplantations allowing the identification of RAF inhibitors as anti-proliferative drug. Leukemia. LONDON: SPRINGERNATURE, 2024, roč. 38, č. 8, s. 1699-1711. ISSN 0887-6924. Dostupné z: https://doi.org/10.1038/s41375-024-02284-w.

LYČKA, Martin; Michal BUBENÍK; Michal ZÁVODNÍK; Vratislav PESKA; Petr FAJKUS; Martin DEMKO; Jiří FAJKUS a Miloslava FOJTOVÁ. TeloBase: a community-curated database of telomere sequences across the tree of life. Nucleic Acids Research. Oxford: Oxford University Press, 2024, roč. 52, D1, s. "D311"-"D321", 11 s. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkad672.

FERNANDES, Soraia; La Cruz Jorge OLIVER-DE; Sofia MORAZZO; Francesco NIRO; Helena DURIKOVA; Marco CASSANI; Alessio CARAVELLA; Piergiuseppe FIORE; Giulia AZZATO; De Marco GIUSEPPE; Agostino LAURIA; Valerio IZZI; Veronika BOSÁKOVÁ; Jan FRIC; Petr FILIPENSKY a Giancarlo FORTE. TGF-β induces matrisome pathological alterations and EMT in patient-derived prostate cancer tumoroids. Matrix Biology. AMSTERDAM: Elsevier, 2024, roč. 125, January 2024, s. 12-30. ISSN 0945-053X. Dostupné z: https://doi.org/10.1016/j.matbio.2023.11.001.

MACHELOVÁ, Adéla; Martina NEŠPOR DADEJOVÁ; Michal FRANEK; Guillaume MOUGEOT; Lauriane SIMON; Samuel LE GOFF; Celine DUC; Jasmin BASSLER; Martin DEMKO; Jana SCHWARZEROVA; Sophie DESSET; Aline V PROBST a Martina DVOŘÁČKOVÁ. The histone chaperones ASF1 and HIRA are required for telomere length and 45S rDNA copy number homeostasis. Plant Journal. Hoboken: Wiley, 2024, roč. 120, č. 3, s. 1125-1141. ISSN 0960-7412. Dostupné z: https://doi.org/10.1111/tpj.17041.

FUAD, Md Mehedi Hasan; Tomas TICHOPAD; Marketa ONDRACKOVA; Kristína KŘÍŽOVÁ; Mária SEIFERTOVÁ; Kristýna VOŘÍŠKOVÁ; Martin DEMKO; Lukáš VETEŠNÍK a Andrea VETEŠNÍKOVÁ ŠIMKOVÁ. Trematode Diplostomum pseudospathaceum inducing differential immune gene expression in sexual and gynogenetic gibel carp (Carassius gibelio): parasites facilitating the coexistence of two reproductive forms of the invasive species. Frontiers in immunology. LAUSANNE: Frontiers Media S.A., 2024, roč. 15, June, s. "1392569", 16 s. ISSN 1664-3224. Dostupné z: https://doi.org/10.3389/fimmu.2024.1392569.

CASSANI, Marco; Soraia FERNANDES; Jorge Oliver-De La CRUZ; Helena DURIKOVA; Jan VRBSKY; Marek PATOČKA; Veronika HEGROVA; Šimon KLIMOVIČ; Jan PŘIBYL; Doriana DEBELLIS; Petr SKLÁDAL; Francesca CAVALIERI; Frank CARUSO a Giancarlo FORTE. YAP Signaling Regulates the Cellular Uptake and Therapeutic Effect of Nanoparticles. Advanced Science. Wiley-VCH GmbH, 2024, roč. 11, č. 2, s. 1-16. ISSN 2198-3844. Dostupné z: https://doi.org/10.1002/advs.202302965.

HEJRET, Václav; Nandan Mysore VARADARAJAN; Eva KLIMENTOVÁ; Katarína GREŠOVÁ; Ilektra-Chara GIASSA; Štěpánka VAŇÁČOVÁ a Panagiotis ALEXIOU. Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation. Scientific Reports. Nature Research, 2023, roč. 13, č. 1, s. 1-9. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-023-49757-z.

JANÁČOVÁ, Lucia; Michaela ŠTENCKOVÁ; Petr LAPČÍK; Šárka HRACHOVINOVÁ; Pavla BOUCHALOVÁ; David POTĚŠIL; Roman HRSTKA; Petr MÜLLER a Pavel BOUCHAL. Catechol-O-methyl transferase suppresses cell invasion and interplays with MET signaling in estrogen dependent breast cancer. Scientific Reports. Nature Research, 2023, roč. 13, č. 1, s. 1-14. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-023-28078-1.

JURÁČEK, Jaroslav; Marie MĄDRZYK; Karolína TRACHTOVÁ; Michaela RUČKOVÁ; Júlia BOHOŠOVÁ; Dominik A. BARTH; Martin PICHLER; Michal STANÍK a Ondřej SLABÝ. Combination of Urinary MiR-501 and MiR-335 With Current Clinical Diagnostic Parameters as Potential Predictive Factors of Prostate Biopsy Outcome. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2023, roč. 20, č. 3, s. 308-316. ISSN 1109-6535. Dostupné z: https://doi.org/10.21873/cgp.20383.

LAPČÍK, Petr; Petr ŠULC; Lucia JANÁČOVÁ; Kateřina JÍLKOVÁ; David POTĚŠIL; Pavla BOUCHALOVÁ; Petr MÜLLER a Pavel BOUCHAL. Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide. Cellular & Molecular Biology Letters. BMC, 2023, roč. 28, č. 1, s. 1-25. ISSN 1425-8153. Dostupné z: https://doi.org/10.1186/s11658-023-00481-6.

MANČÍKOVÁ, Veronika; Michaela PEŠOVÁ; Šárka PAVLOVÁ; Robert HELMA; Kristýna ZÁVACKÁ; Václav HEJRET; Petr TAUŠ; Jakub HYNŠT; Karla PLEVOVÁ; Jitka MALČÍKOVÁ a Šárka POSPÍŠILOVÁ. Distinct p53 phosphorylation patterns in chronic lymphocytic leukemia patients are reflected in the activation of circumjacent pathways upon DNA damage. MOLECULAR ONCOLOGY. ENGLAND: WILEY, 2023, roč. 17, č. 1, s. 82-97. ISSN 1574-7891. Dostupné z: https://doi.org/10.1002/1878-0261.13337.

SCHUMACHER, Neele; Ilka THOMSEN; Florian BRUNDERT; Václav HEJRET; Stefan DUESTERHOFT; Boris TICHÝ; Dirk SCHMIDT-ARRAS; Matthias VOSS a Stefan ROSE-JOHN. EGFR stimulation enables IL-6 trans-signalling via iRhom2-dependent ADAM17 activation in mammary epithelial cells. Biochimica et biophysica acta : Molecular Cell Research. Amsterdam: Elsevier, 2023, roč. 1870, č. 7, s. 1-16. ISSN 0167-4889. Dostupné z: https://doi.org/10.1016/j.bbamcr.2023.119489.

GREŠOVÁ, Katarína; Vlastimil MARTINEK; David ČECHÁK; Petr ŠIMEČEK a Panagiotis ALEXIOU. Genomic benchmarks: a collection of datasets for genomic sequence classification. BMC Genomic Data. 2730-6844: BMC, 2023, roč. 24, č. 1, s. 1-9. ISSN 2730-6844. Dostupné z: https://doi.org/10.1186/s12863-023-01123-8.

SPIELVOGEL, Clemens P; Stefan STOIBER; Laszlo PAPP; Denis KRAJNC; Marko GRAHOVAC; Elisabeth GURNHOFER; Karolína TRACHTOVÁ; Vojtěch BYSTRÝ; Asha LEISSER; Bernhard JANK; Julia SCHNOELL; Lorenz KADLETZ; Gregor HEIDUSCHKA; Thomas BEYER; Marcus HACKER; Lukas KENNER a Alexander R HAUG. Radiogenomic markers enable risk stratification and inference of mutational pathway states in head and neck cancer. European Journal of Nuclear Medicine and Molecular Imaging. NEW YORK: SPRINGER, 2023, roč. 50, č. 2, s. 546-558. ISSN 1619-7070. Dostupné z: https://doi.org/10.1007/s00259-022-05973-9.

ROŠKOVÁ, Ivana; Marek VEČEŘA; Lenka RADOVÁ; Karolína TRACHTOVÁ; František SIEGL; Markéta HERMANOVÁ; Michal HENDRYCH; Leoš KŘEN; Václav VYBÍHAL; Hana VALEKOVÁ; Petra KASPAROVA; Ivana KOLOUŠKOVÁ; Tomáš KAZDA; Ondřej SLABÝ; Radim JANČÁLEK; Jiří ŠÁNA a Martin SMRČKA. Small RNA Sequencing Identifies a Six-MicroRNA Signature Enabling Classification of Brain Metastases According to their Origin. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2023, roč. 20, č. 1, s. 18-29. ISSN 1109-6535. Dostupné z: https://doi.org/10.21873/cgp.20361.

ŠTĚRBA, Martin; Petra POKORNÁ; Renata FABEROVÁ; Blanka PINKOVÁ; Jarmila SKOTÁKOVÁ; Anna SEEHOFNEROVÁ; Jan BLATNÝ; Lucia JANIGOVÁ; Olga KOŠKOVÁ; Hana PÁLOVÁ; Michal MAHDAL; Lukáš PAZOUREK; Petr JABANDŽIEV; Ondřej SLABÝ; Peter MÚDRY a Jaroslav ŠTĚRBA. Targeted treatment of severe vascular malformations harboring PIK3CA and TEK mutations with alpelisib is highly effective with limited toxicity. Scientific reports. BERLIN: NATURE PORTFOLIO, 2023, roč. 13, č. 1, s. 1-9. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-023-37468-4.

FULNEČEK, Jaroslav; Eva KLIMENTOVÁ; Albert CAIRO CALZADA; Soňa BUKOVČÁKOVÁ; Panagiotis ALEXIOU; Zbyněk PROKOP a Karel ŘÍHA. The SAP domain of Ku facilitates its efficient loading onto DNA ends. Nucleic Acids Research. Oxford: Oxford University Press, 2023, roč. 51, č. 21, s. 11706-11716. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkad850.

JEDLIČKOVÁ, Veronika; Václav HEJRET; Martin DEMKO; Pavel JEDLIČKA; Marie ŠTEFKOVÁ a Helene ROBERT BOISIVON. Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus. BMC Genomics. London: BioMed Central Ltd, 2023, roč. 24, č. 1, s. 1-15. ISSN 1471-2164. Dostupné z: https://doi.org/10.1186/s12864-023-09316-2.

VETEŠNÍKOVÁ ŠIMKOVÁ, Andrea; Kristína KŘÍŽOVÁ; Kristýna VOŘÍŠKOVÁ; Lukáš VETEŠNÍK; Vojtěch BYSTRÝ a Martin DEMKO. Transcriptome Profile Analyses of Head Kidney in Roach (Rutilus rutilus), Common Bream (Abramis brama) and Their Hybrids: Does Infection by Monogenean Parasites in Freshwater Fish Reveal Differences in Fish Vigour among Parental Species and Their Hybrids? Biology. Basel: MDPI, 2023, roč. 12, č. 9, s. 1-29. ISSN 2079-7737. Dostupné z: https://doi.org/10.3390/biology12091199.

VACULÍK, Ondřej; Eliška CHALUPOVÁ; Katarína GREŠOVÁ; Tomáš MAJTNER a Panagiotis ALEXIOU. Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes. Biology. MDPI, 2023, roč. 12, č. 10, s. 1-19. ISSN 2079-7737. Dostupné z: https://doi.org/10.3390/biology12101276.

PŘIKRYLOVÁ, Klára; Agata Magdalena KILAR; Petra KOVÁČIKOVÁ; Jiří FAJKUS; Eva SÝKOROVÁ a Miloslava FOJTOVÁ. Compromised function of ARM, the interactor of Arabidopsis telomerase, suggests its role in stress responses. Plant Science. Elsevier, 2022, roč. 325, December, s. 1-16. ISSN 0168-9452. Dostupné z: https://doi.org/10.1016/j.plantsci.2022.111453.

FROHLICH, Jan; Kristina KOVACOVICOVA; Marco RAFFAELE; Tereza VIRGLOVA; Eliska CIZKOVA; Jan KUČERA; Julie DOBROVOLNÁ; Martin WABITSCH; Marion PEYROU; Francesca BONOMINI; Rita REZZANI; George N. CHALDAKOV; Anton B. TONCHEV; Michelino DI ROSA; Nicolas BLAVET; Václav HEJRET a Manlio VINCIGUERRA. GDF11 inhibits adipogenesis and improves mature adipocytes metabolic function via WNT/beta-catenin and ALK5/SMAD2/3 pathways. Cell Proliferation. 2022, roč. 55, č. 10, s. 1-15. ISSN 0960-7722. Dostupné z: https://doi.org/10.1111/cpr.13310.

VALISKOVA, Barbora; Sona GREGOROVA; Diana LUSTYK; Petr ŠIMEČEK; Petr JANSA a Jiri FOREJT. Genic and chromosomal components of Prdm9-driven hybrid male sterility in mice (Mus musculus). Genetics. BETHESDA (USA): GENETICS SOCIETY AMERICA, 2022, roč. 222, č. 1, s. 1-14. ISSN 0016-6731. Dostupné z: https://doi.org/10.1093/genetics/iyac116.

LIMBERGER, Tanja; Michaela SCHLEDERER; Karolína TRACHTOVÁ; Ines Garces de los Fayos ALONSO; Jiaye YANG; Sandra HOEGLER; Christina STERNBERG; Vojtěch BYSTRÝ; Jan OPPELT; Boris TICHÝ; Margit SCHMEIDL; Petra KODAJOVA; Anton JAEGER; Heidi A NEUBAUER; Monika OBERHUBER; Belinda S SCHMALZBAUER; Šárka POSPÍŠILOVÁ; Helmut DOLZNIG; Wolfgang WADSAK; Zoran CULIG; Suzanne Dawn TURNER; Gerda EGGER; Sabine LAGGER a Lukas KENNER. KMT2C methyltransferase domain regulated INK4A expression suppresses prostate cancer metastasis. Molecular Cancer. LONDON: BioMed Central, 2022, roč. 21, č. 1, s. 89-107. ISSN 1476-4598. Dostupné z: https://doi.org/10.1186/s12943-022-01542-8.

POKORNÁ, Petra; Giannoula KLEMENT; Alžběta VAŠÍKOVÁ; Veronika KANDEROVÁ; Marta JEŽOVÁ; Kristýna NOSKOVÁ; Peter MÚDRY; Michal KÝR; Tomáš MERTA; Viera BAJČIOVÁ; Zdenka KŘENOVÁ; Hana PÁLOVÁ; Lenka ZDRAŽILOVÁ DUBSKÁ; Ondřej SLABÝ; Dalibor VALÍK a Jaroslav ŠTĚRBA. Minimal Residual Disease–Guided Intermittent Dosing in Patients With Cancer: Successful Treatment of Chemoresistant Anaplastic Large Cell Lymphoma Using Intermittent Lorlatinib Dosing. JCO PRECISION ONCOLOGY. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS, 2022, roč. 6, June 2022, s. 1-7. ISSN 2473-4284. Dostupné z: https://doi.org/10.1200/PO.21.00525.

KLIMENTOVÁ, Eva; Václav HEJRET; Ján KRČMÁŘ; Katarína GREŠOVÁ; Ilektra-Chara GIASSA a Panagiotis ALEXIOU. miRBind: A Deep Learning Method for miRNA Binding Classification. GENES. MDPI, 2022, roč. 13, č. 12, s. 2323-2335. ISSN 2073-4425. Dostupné z: https://doi.org/10.3390/genes13122323.

MARTINO, Fabiana; Nandan Mysore VARADARAJAN; Ana Rubina PERESTRELO; Václav HEJRET; Helena DURIKOVA; Dragana VUKIĆ; Vladimir HORVATH; Francesca CAVALIERI; Frank CARUSO; Waleed S ALBIHLAL; Andre P GERBER; Mary Anne O'CONNELL; Štěpánka VAŇÁČOVÁ; Stefania PAGLIARI a Giancarlo FORTE. The mechanical regulation of RNA binding protein hnRNPC in the failing heart. Science Translational Medicine. Washington: American Association for the Advancement of Science, 2022, roč. 14, č. 672, s. 1-17. ISSN 1946-6234. Dostupné z: https://doi.org/10.1126/scitranslmed.abo5715.

BENCÚROVÁ, Petra; Jiří BALOUN; Jakub HYNŠT; Jan OPPELT; Hana KUBOVÁ; Šárka POSPÍŠILOVÁ a Milan BRÁZDIL. Dynamic miRNA changes during the process of epileptogenesis in an infantile and adult-onset model. Nature Scientific Reports. London: NATURE RESEARCH, 2021, roč. 11, č. 1, s. 1-14. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-021-89084-9.

ŠEDA, Václav; Eva VOJÁČKOVÁ; Laura ONDRIŠOVÁ; Lenka KOŠŤÁLOVÁ; Sonali SHARMA; Tomáš LOJA; Gabriela MLADONICKÁ PAVLASOVÁ; Daniel ZICHA; Marie KUDLIČKOVÁ PEŠKOVÁ; Jan KŘIVÁNEK; Květoslava MATULOVÁ; Leoš KŘEN; V. BENES; Markéta LITZMANOVÁ; Marek BORSKÝ; Jan OPPELT; Jan VERNER; Šárka POSPÍŠILOVÁ; Yvona BRYCHTOVÁ; Anna PANOVSKÁ; Z. TAN; S.X. ZHANG; Michael DOUBEK; Kateřina AMRUZ ČERNÁ; Jiří MAYER a Marek MRÁZ. FoxO1-GAB1 axis regulates homing capacity and tonic AKT activity in chronic lymphocytic leukemia. Blood. Washington DC, USA: American Society of Hematology, 2021, roč. 138, č. 9, s. 758-772. ISSN 0006-4971. Dostupné z: https://doi.org/10.1182/blood.2020008101.

DYKOVÁ, Iva; Jakub ŽÁK; Martin REICHARD; Kamila SOUČKOVÁ; Ondřej SLABÝ; Vojtěch BYSTRÝ a Radim BLAŽEK. Histopathology of laboratory-reared Nothobranchius fishes: Mycobacterial infections versus neoplastic lesions. Journal of Fish Diseases. Hoboken: Wiley, 2021, roč. 44, č. 8, s. 1179-1190. ISSN 0140-7775. Dostupné z: https://doi.org/10.1111/jfd.13378.

PERESTRELO, A. R.; A. C. SILVA; J. OLIVER-DE LA CRUZ; Fabiana MARTINO; Vladimir HORVATH; Guido CALUORI; Ondrej POLANSKY; Vladimir VINARSKY; G. AZZATO; G. DE MARCO; Víta ŽAMPACHOVÁ; Petr SKLÁDAL; S. PAGLIARI; A. RAINER; P. PINTO-DO-O; A. CARAVELLA; Kamila KOCI; D. S. NASCIMENTO a Giancarlo FORTE. Multiscale Analysis of Extracellular Matrix Remodeling in the Failing Heart. Circulation research. Dallas: American Heart Association, 2021, roč. 128, č. 1, s. 24-38. ISSN 0009-7330. Dostupné z: https://doi.org/10.1161/CIRCRESAHA.120.317685.

KWIK, M.; S. HAINZL; Jan OPPELT; Boris TICHÝ; U. KOLLER; E. BERNARDINELLI; M. STEINER; G. ZARA; C. NOFZIGER; S. WEIS; M. PAULMICHL; S. DOSSENA; W. PATSCH a S.M. SOYAL. Selective Activation of CNS and Reference PPARGC1A Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2021, roč. 22, č. 7, s. 3296-3319. ISSN 1422-0067. Dostupné z: https://doi.org/10.3390/ijms22073296.

LOBELLO, Cosimo; Boris TICHÝ; Vojtěch BYSTRÝ; Lenka RADOVÁ; Daniel FILIP; Marek MRÁZ; I.A. MONTES-MOJARRO; N. PROKOPH; H. LAROSE; H.C. LIANG; G.G. SHARMA; L. MOLOGNI; D. BELADA; K. KAMARADOVA; F. FEND; C. GAMBACORTI-PASSERINI; O. MERKEL; Suzanne Dawn TURNER; Andrea JANÍKOVÁ a Šárka POSPÍŠILOVÁ. STAT3 and TP53 mutations associate with poor prognosis in anaplastic large cell lymphoma. Leukemia. London: Nature Publishing Group, 2021, roč. 35, č. 5, s. 1500-1505. ISSN 0887-6924. Dostupné z: https://doi.org/10.1038/s41375-020-01093-1.

ŠTĚTKOVÁ, Monika; Kateřina GROWKOVÁ; Petr FOJTÍK; Barbora VALČÍKOVÁ; Veronika PALUŠOVÁ; Amandine VERLANDE; Radek JORDA; Vladimír KRYŠTOF; Václav HEJRET; Panagiotis ALEXIOU; Vladimír ROTREKL a Stjepan ULDRIJAN. CDK9 activity is critical for maintaining MDM4 overexpression in tumor cells. CELL DEATH & DISEASE. LONDON: NATURE PUBLISHING GROUP, 2020, roč. 11, č. 9, s. 1-14. ISSN 2041-4889. Dostupné z: https://doi.org/10.1038/s41419-020-02971-3.

JANEČEK, Jan; Markéta NOVÁKOVÁ; Jan OPPELT; Petra POSPÍŠILOVÁ; Anita CUNHA; Ana Catarina SILVA; Dantong LI a David ŠMAJS. Complete Chromosomal Sequences of Two Borrelia miyamotoi Samples Obtained from Ixodes ricinus Eggs in Czechia. Microbiology Resource Announcements. Washington, D.C.: American Society for Microbiology, 2020, roč. 9, č. 14, s. 1-3. ISSN 2576-098X. Dostupné z: https://doi.org/10.1128/MRA.01504-19.

WAYHELOVÁ, Markéta; Michal RYZÍ; Jan OPPELT; Eva HLADÍLKOVÁ; Vladimíra VALLOVÁ; Lenka KRSKOVÁ; Marcela VILÉMOVÁ; Hana POLÁČKOVÁ; Renata GAILLYOVÁ a Petr KUGLÍK. Novel Familial IQSEC2 Pathogenic Sequence Variant Associated With Neurodevelopmental Disorders and Epilepsy. Neurogenetics. New York: Springer, 2020, roč. 21, č. 4, s. 269-278. ISSN 1364-6745. Dostupné z: https://doi.org/10.1007/s10048-020-00616-3.

LAIDOU, Stamatia; Gregorio ALANIS-LOBATO; Jan PŘIBYL; Tamás RASKÓ; Boris TICHÝ; Kamil MIKULÁŠEK; Maria TSAGIOPOULOU; Jan OPPELT; Georgia KASTRINAKI; Maria LEFAKI; Manvendra SINGH; Annika ZINK; Niki CHONDROGIANNI; Fotis PSOMOPOULOS; Alessandro PRIGIONE; Zoltan IVICS; Šárka POSPÍŠILOVÁ; Petr SKLÁDAL; Zsuzsanna IZSVAK; Miguel A. ANDRADE-NAVARRO a Spyros PETRAKIS. Nuclear inclusions of pathogenic ataxin-1 induce oxidative stress and perturb the protein synthesis machinery. Redox Biology. Amsterdam: Elsevier, 2020, roč. 32, MAY 2020, s. 1-16. ISSN 2213-2317. Dostupné z: https://doi.org/10.1016/j.redox.2020.101458.

GRIONI, Andrea; G. FAZIO; S. RIGAMONTI; Vojtěch BYSTRÝ; G. DANIELE; Zuzana DOSTÁLOVÁ; M. QUADRI; C. SAITTA; D. SILVESTRI; S. SONGIA; C.T. STORLAZZI; A. BIONDI; Nikos DARZENTAS a G. CAZZANIGA. A Simple RNA Target Capture NGS Strategy for Fusion Genes Assessment in the Diagnostics of Pediatric B-cell Acute Lymphoblastic Leukemia. HEMASPHERE. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS, 2019, roč. 3, č. 3, s. 1-9. ISSN 2572-9241. Dostupné z: https://doi.org/10.1097/HS9.0000000000000250.

WIATREK-MOUMOULIDIS, Dagmara Marta; Maria Elena CANDELA; Jiří SEDMÍK; Jan OPPELT; Liam KEEGAN a Mary Anne O'CONNELL. Activation of innate immunity by mitochondrial dsRNA in mouse cells lacking p53 protein. RNA. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 2019, roč. 25, č. 6, s. 713-726. ISSN 1355-8382. Dostupné z: https://doi.org/10.1261/rna.069625.118.

GRILLOVÁ, Linda; Jan OPPELT; Lenka MIKALOVÁ; Markéta NOVÁKOVÁ; LLorenzo GIACANI; Anežka NIESNEROVÁ; Angel A. NODA; Ariel E. MECHALY; Petra POSPÍŠILOVÁ; Darina CEJKOVA; Philippe A. GRANGE; Nicolas DUPIN; Radim STRNADEL; Marcus CHEN; Ian DENHAM; Natasha ARORA; Mathieu PICARDEAU; Christopher WESTON; R. Allyn FORSYTH a David ŠMAJS. Directly Sequenced Genomes of Contemporary Strains of Syphilis Reveal Recombination-Driven Diversity in Genes Encoding Predicted Surface-Exposed Antigens. Frontiers in Microbiology. Lausanne: Frontiers Media SA, 2019, roč. 10, JUL 31 2019, s. 1-14. ISSN 1664-302X. Dostupné z: https://doi.org/10.3389/fmicb.2019.01691.

PEŠKOVÁ, Lucie; Kateřina AMRUZ ČERNÁ; Jan OPPELT; Marek MRÁZ a Tomáš BÁRTA. Oct4-mediated reprogramming induces embryonic-like microRNA expression signatures in human fibroblasts. Scientific reports. LONDON: NATURE PUBLISHING GROUP, 2019, roč. 9, OCT 31 2019, s. 1-13. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-019-52294-3.

STROUHAL, Michal; Lenka PAŠTĚKOVÁ; Jan HAVIERNIK; Sascha KNAUF; Sylvia BRUISTEN; Gerda T. NOORDHOEK; Jan OPPELT; Darina ČEJKOVÁ a David ŠMAJS. Complete genome sequences of two strains of Treponema pallidum subsp pertenue from Indonesia: Modular structure of several treponemal genes. PLoS neglected tropical diseases. San Francisco: Public Library of Science, 2018, roč. 12, č. 10, s. 0006867-6886. ISSN 1935-2735. Dostupné z: https://doi.org/10.1371/journal.pntd.0006867.

GRILLOVÁ, Linda; Lorenzo GIACANI; Lenka PAŠTĚKOVÁ; Michal STROUHAL; Radim STRNADEL; Christina MARRA; Arturo CENTURION-LARA; Lucy POVEDA; Giancarlo RUSSO; Darina ČEJKOVÁ; Vladimír VAŠKŮ; Jan OPPELT a David ŠMAJS. Sequencing of Treponema pallidum subsp pallidum from isolate UZ1974 using Anti-Treponemal Antibodies Enrichment: First complete whole genome sequence obtained directly from human clinical material. Plos one. San Francisco: Public Library Science, 2018, roč. 13, č. 8, s. 1-14. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0202619.