Masaryk University

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    2024

    1. An ADAR1 dsRBD3-PKR kinase domain interaction on dsRNA inhibits PKR activation
      SINIGAGLIA, Ketty, Anna CHERIAN, Qiupei DU, Valentina LACOVICH STRAŠIL, Dragana VUKIĆ, Janka MELICHEROVÁ, Pavla MUSILOVÁ, Lisa ZERAD, Stanislav STEJSKAL, Radek MALIK, Jan PROCHAZKA, Nadege BONDURAND, Radislav SEDLACEK, Mary Anne O'CONNELL and Liam KEEGAN. An ADAR1 dsRBD3-PKR kinase domain interaction on dsRNA inhibits PKR activation. Cell Reports. CAMBRIDGE: Cell Press, 2024, vol. 43, No 8, p. 1-25. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2024.114618.
      More: https://is.muni.cz/publication/2436837/en
    2. Cell Tree Rings: the structure of somatic evolution as a human aging timer
      CSORDAS, Attila, Botond SIPOS, Terézia KURUCOVÁ, Andrea VOLFOVA, Frantisek ZAMOLA, Boris TICHÝ and Damien G HICKS. Cell Tree Rings: the structure of somatic evolution as a human aging timer. GEROSCIENCE. DORDRECHT: SPRINGER, 2024, vol. 2024, Jan, p. 1-15. ISSN 2509-2715. Available from: https://dx.doi.org/10.1007/s11357-023-01053-4.
      More: https://is.muni.cz/publication/2373918/en
    3. CF Day 2023
      HOŠKOVÁ, Kateřina, Šárka FAJTLOVÁ, Pavel PLEVKA, Michal MIKL, Milan EŠNER, Radka SVOBODOVÁ and Boris TICHÝ. CF Day 2023. 2024.
      More: https://is.muni.cz/publication/2375939/en
    4. Integrative NGS testing reveals clonal dynamics of adverse genomic defects contributing to a natural progression in treatment-naïve CLL patients
      NAVRKALOVÁ, Veronika, Karla PLEVOVÁ, Lenka RADOVÁ, Jakub Paweł PORC, Karol PÁL, Jitka MALČÍKOVÁ, Šárka PAVLOVÁ, Michael DOUBEK, Anna PANOVSKÁ, Jana KOTAŠKOVÁ and Šárka POSPÍŠILOVÁ. Integrative NGS testing reveals clonal dynamics of adverse genomic defects contributing to a natural progression in treatment-naïve CLL patients. British journal of haematology. Hoboken: Wiley-Blackwell, 2024, vol. 204, No 1, p. 240-249. ISSN 0007-1048. Available from: https://dx.doi.org/10.1111/bjh.19191.
      More: https://is.muni.cz/publication/2372237/en
    5. Unveiling the dynamics and molecular landscape of a rare chronic lymphocytic leukemia subpopulation driving refractoriness: insights from single-cell RNA sequencing
      KURUCOVÁ, Terézia, Kamila RÉBLOVÁ, Pavlína JANOVSKÁ, Jakub Paweł PORC, Veronika NAVRKALOVÁ, Šárka PAVLOVÁ, Jitka MALČÍKOVÁ, Karla PLEVOVÁ, Boris TICHÝ, Michael DOUBEK, Vítězslav BRYJA, Jana KOTAŠKOVÁ and Šárka POSPÍŠILOVÁ. Unveiling the dynamics and molecular landscape of a rare chronic lymphocytic leukemia subpopulation driving refractoriness: insights from single-cell RNA sequencing. Molecular oncology. Hoboken: Wiley, 2024, 13 pp. ISSN 1574-7891. Available from: https://dx.doi.org/10.1002/1878-0261.13663.
      More: https://is.muni.cz/publication/2407762/en
    6. YAP Signaling Regulates the Cellular Uptake and Therapeutic Effect of Nanoparticles
      CASSANI, Marco, Soraia FERNANDES, Jorge Oliver-De La CRUZ, Helena DURIKOVA, Jan VRBSKY, Marek PATOČKA, Veronika HEGROVA, Šimon KLIMOVIČ, Jan PŘIBYL, Doriana DEBELLIS, Petr SKLÁDAL, Francesca CAVALIERI, Frank CARUSO and Giancarlo FORTE. YAP Signaling Regulates the Cellular Uptake and Therapeutic Effect of Nanoparticles. Advanced Science. Wiley-VCH GmbH, 2024, vol. 11, No 2, p. 1-16. ISSN 2198-3844. Available from: https://dx.doi.org/10.1002/advs.202302965.
      More: https://is.muni.cz/publication/2339561/en

    2023

    1. Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation
      HEJRET, Václav, Nandan Mysore VARADARAJAN, Eva KLIMENTOVÁ, Katarína GREŠOVÁ, Ilektra-Chara GIASSA, Štěpánka VAŇÁČOVÁ and Panagiotis ALEXIOU. Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation. Scientific Reports. Nature Research, 2023, vol. 13, No 1, p. 1-9. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-023-49757-z.
      More: https://is.muni.cz/publication/2378640/en
    2. Business Research Forum 2023
      TICHÝ, Boris, Jitka ŠTENCLOVÁ, MIroslav HAMAN and Barbora TRUKSOVÁ. Business Research Forum 2023. 2023.
      More: https://is.muni.cz/publication/2384857/en
    3. Cerebral organoids derived from patients with Alzheimer´s disease with PSEN1/2 mutations have defective tissue patterning and altered development
      VÁŇOVÁ, Tereza, Jiří SEDMÍK, Jan RAŠKA, Kateřina AMRUZ ČERNÁ, Petr TAUŠ, Veronika POSPÍŠILOVÁ, Markéta NEZVEDOVÁ, Veronika FEDOROVÁ, Soňa KADÁKOVÁ, Hana KLÍMOVÁ, Michaela CAPANDOVÁ, Petra ORVISKÁ, Petr FOJTÍK, Simona BÁRTOVÁ, Karla PLEVOVÁ, Zdeněk SPÁČIL, Hana HŘÍBKOVÁ and Dáša BOHAČIAKOVÁ. Cerebral organoids derived from patients with Alzheimer´s disease with PSEN1/2 mutations have defective tissue patterning and altered development. CELL REPORTS. CAMBRIDGE: CELL PRESS, 2023, vol. 42, No 11, p. 1-27. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2023.113310.
      More: https://is.muni.cz/publication/2329980/en
    4. Distinct p53 phosphorylation patterns in chronic lymphocytic leukemia patients are reflected in the activation of circumjacent pathways upon DNA damage
      MANČÍKOVÁ, Veronika, Michaela PEŠOVÁ, Šárka PAVLOVÁ, Robert HELMA, Kristýna ZÁVACKÁ, Václav HEJRET, Petr TAUŠ, Jakub HYNŠT, Karla PLEVOVÁ, Jitka MALČÍKOVÁ and Šárka POSPÍŠILOVÁ. Distinct p53 phosphorylation patterns in chronic lymphocytic leukemia patients are reflected in the activation of circumjacent pathways upon DNA damage. MOLECULAR ONCOLOGY. ENGLAND: WILEY, 2023, vol. 17, No 1, p. 82-97. ISSN 1574-7891. Available from: https://dx.doi.org/10.1002/1878-0261.13337.
      More: https://is.muni.cz/publication/2239430/en
    5. From fish to cells: Establishment of continuous cell lines from embryos of annual killifish Nothobranchius furzeri and N. kadleci
      SOUČKOVÁ, Kamila, Matej JASÍK, Iva SOVADINOVÁ, Alexandr SEMBER, Eliška SYCHROVÁ, Anna KONIECZNA, Vojtěch BYSTRÝ, Iva DYKOVÁ, Radim BLAŽEK, Karolína LUKŠÍKOVÁ, Tomáš PAVLICA, Marek JANKÁSEK, Marie ALTMANOVÁ, Jakub ŽÁK, Adriána ZBONČÁKOVÁ, Martin REICHARD and Ondřej SLABÝ. From fish to cells: Establishment of continuous cell lines from embryos of annual killifish Nothobranchius furzeri and N. kadleci. Aquatic Toxicology. Elsevier, 2023, vol. 259, June, p. 1-16. ISSN 0166-445X. Available from: https://dx.doi.org/10.1016/j.aquatox.2023.106517.
      More: https://is.muni.cz/publication/2277988/en
    6. Long non-coding RNAs enable precise diagnosis and prediction of early relapse after nephrectomy in patients with renal cell carcinoma
      BOHOŠOVÁ, Júlia, Kateřina KOŽELKOVÁ, Dagmar AL TUKMACHI, Karolína TRACHTOVÁ, Ondřej NAAR, Michaela RUČKOVÁ, Eva KOLÁRIKOVÁ, Michal STANÍK, Alexandr POPRACH and Ondřej SLABÝ. Long non-coding RNAs enable precise diagnosis and prediction of early relapse after nephrectomy in patients with renal cell carcinoma. Journal of cancer research and clinical oncology. NEW YORK: Springer, 2023, vol. 149, No 10, p. 7587-7600. ISSN 0171-5216. Available from: https://dx.doi.org/10.1007/s00432-023-04700-7.
      More: https://is.muni.cz/publication/2293479/en
    7. MicroRNA Profiling of Self-Renewing Human Neural Stem Cells Reveals Novel Sets of Differentially Expressed microRNAs During Neural Differentiation In Vitro
      FEDOROVÁ, Veronika, Kateřina AMRUZ ČERNÁ, Jan OPPELT, Veronika POSPÍŠILOVÁ, Tomáš BÁRTA, Marek MRÁZ and Dáša BOHAČIAKOVÁ. MicroRNA Profiling of Self-Renewing Human Neural Stem Cells Reveals Novel Sets of Differentially Expressed microRNAs During Neural Differentiation In Vitro. Stem Cell Reviews and Reports. NEW YORK: SPRINGER, 2023, vol. 19, No 5, p. 1524-1539. ISSN 2629-3269. Available from: https://dx.doi.org/10.1007/s12015-023-10524-2.
      More: https://is.muni.cz/publication/2278237/en
    8. Mimicking Tumor Cell Heterogeneity of Colorectal Cancer in a Patient-derived Organoid-Fibroblast Model
      ATANASOVA, Velina S, Crhistian de Jesus CARDONA, Václav HEJRET, Andreas TIEFENBACHER, Theresia MAIR, Loan TRAN, Janette PFNEISSL, Kristina DRAGANIC, Carina BINDER, Julijan KABILJO, Janik CLEMENT, Katharina WOERAN, Barbara NEUDERT, Sabrina WOHLHAUPTER, Astrid HAASE, Sandra DOMAZET, Markus HENGSTSCHLAEGER, Markus MITTERHAUSER, Leonhard MUELLAUER, Boris TICHÝ, Michael BERGMANN, Gabriele SCHWEIKERT, Markus HARTL, Helmut DOLZNIG and Gerda EGGER. Mimicking Tumor Cell Heterogeneity of Colorectal Cancer in a Patient-derived Organoid-Fibroblast Model. CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY. UNITED STATES: ELSEVIER INC, 2023, vol. 15, No 6, p. 1391-1419. ISSN 2352-345X. Available from: https://dx.doi.org/10.1016/j.jcmgh.2023.02.014.
      More: https://is.muni.cz/publication/2365017/en
    9. Myeloid lineage cells evince distinct steady-state level of certain gene groups in dependence on hereditary angioedema severity
      BALLONOVÁ, Lucie, Přemysl SOUČEK, Peter SLANINA, Kamila RÉBLOVÁ, Ondřej ZAPLETAL, Marcela VLKOVÁ, Roman HAKL, Viktor BÍLY, Hana GROMBIŘÍKOVÁ, Eliška SVOBODOVÁ, Petra KULÍŠKOVÁ, Julie ŠTÍCHOVÁ, Marta SOBOTKOVÁ, Zachová RADANA, Jana HANZLÍKOVÁ, Martina VACHOVÁ, Pavlína KRÁLÍČKOVÁ, Irena KRČMOVÁ, Miloš JESEŇÁK and Tomáš FREIBERGER. Myeloid lineage cells evince distinct steady-state level of certain gene groups in dependence on hereditary angioedema severity. FRONTIERS IN GENETICS. LAUSANNE: FRONTIERS MEDIA SA, 2023, vol. 14, July 2023, p. 1-15. ISSN 1664-8021. Available from: https://dx.doi.org/10.3389/fgene.2023.1123914.
      More: https://is.muni.cz/publication/2298959/en
    10. Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods
      HLAVATÁ, Kristýna, Jana LEONG-ŠKORNIČKOVÁ, Eliška ZÁVESKÁ, Otakar ŠÍDA, Mark NEWMAN, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK, Karol MARHOLD and Tomáš FÉR. Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods. Molecular Phylogenetics and Evolution. Elsevier, 2023, vol. 178, January, p. 1-14. ISSN 1055-7903. Available from: https://dx.doi.org/10.1016/j.ympev.2022.107666.
      More: https://is.muni.cz/publication/2355899/en
    11. Radiogenomic markers enable risk stratification and inference of mutational pathway states in head and neck cancer
      SPIELVOGEL, Clemens P, Stefan STOIBER, Laszlo PAPP, Denis KRAJNC, Marko GRAHOVAC, Elisabeth GURNHOFER, Karolína TRACHTOVÁ, Vojtěch BYSTRÝ, Asha LEISSER, Bernhard JANK, Julia SCHNOELL, Lorenz KADLETZ, Gregor HEIDUSCHKA, Thomas BEYER, Marcus HACKER, Lukas KENNER and Alexander R HAUG. Radiogenomic markers enable risk stratification and inference of mutational pathway states in head and neck cancer. European Journal of Nuclear Medicine and Molecular Imaging. NEW YORK: SPRINGER, 2023, vol. 50, No 2, p. 546-558. ISSN 1619-7070. Available from: https://dx.doi.org/10.1007/s00259-022-05973-9.
      More: https://is.muni.cz/publication/2383197/en
    12. Risk factors for tumors or leukemia development in the first two years of life
      WIEDERMANNOVA, Hana, Peter MÚDRY, Jan PAVLICEK, Hana TOMASKOVA, Andrea HLADIKOVA, Hana PÁLOVÁ, Petra POKORNÁ, Ondřej SLABÝ and Jaroslav ŠTĚRBA. Risk factors for tumors or leukemia development in the first two years of life. Biomedical Papers, Olomouc: Palacky University. Olomouc: Palacky University, 2023, vol. 167, No 2, p. 246-253. ISSN 1213-8118. Available from: https://dx.doi.org/10.5507/bp.2022.004.
      More: https://is.muni.cz/publication/2250015/en
    13. Small RNA Sequencing Identifies a Six-MicroRNA Signature Enabling Classification of Brain Metastases According to their Origin
      ROŠKOVÁ, Ivana, Marek VEČEŘA, Lenka RADOVÁ, Karolína TRACHTOVÁ, František SIEGL, Markéta HERMANOVÁ, Michal HENDRYCH, Leoš KŘEN, Václav VYBÍHAL, Hana VALEKOVÁ, Petra KASPAROVA, Ivana KOLOUŠKOVÁ, Tomáš KAZDA, Ondřej SLABÝ, Radim JANČÁLEK, Jiří ŠÁNA and Martin SMRČKA. Small RNA Sequencing Identifies a Six-MicroRNA Signature Enabling Classification of Brain Metastases According to their Origin. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2023, vol. 20, No 1, p. 18-29. ISSN 1109-6535. Available from: https://dx.doi.org/10.21873/cgp.20361.
      More: https://is.muni.cz/publication/2293483/en
    14. Targeted treatment of severe vascular malformations harboring PIK3CA and TEK mutations with alpelisib is highly effective with limited toxicity
      ŠTĚRBA, Martin, Petra POKORNÁ, Renata FABEROVÁ, Blanka PINKOVÁ, Jarmila SKOTÁKOVÁ, Anna SEEHOFNEROVÁ, Jan BLATNÝ, Lucia JANIGOVÁ, Olga KOŠKOVÁ, Hana PÁLOVÁ, Michal MAHDAL, Lukáš PAZOUREK, Petr JABANDŽIEV, Ondřej SLABÝ, Peter MÚDRY and Jaroslav ŠTĚRBA. Targeted treatment of severe vascular malformations harboring PIK3CA and TEK mutations with alpelisib is highly effective with limited toxicity. Scientific reports. BERLIN: NATURE PORTFOLIO, 2023, vol. 13, No 1, p. 1-9. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-023-37468-4.
      More: https://is.muni.cz/publication/2299023/en
    15. Telomerase RNA gene paralogs in plants - the usual pathway to unusual telomeres
      ZÁVODNÍK, Michal, Petr FAJKUS, Michal FRANEK, David KOPECKÝ, Sonia GARCIA, Steven DODSWORTH, Andres OREJUELA, Agata Magdalena KILAR, Jiri PTACEK, Martin MÁTL, Anna HÝSKOVÁ, Jiří FAJKUS and Vratislav PEŠKA. Telomerase RNA gene paralogs in plants - the usual pathway to unusual telomeres. New Phytologist. HOBOKEN: Blackwell Science, 2023, vol. 239, No 6, p. 2353-2366. ISSN 0028-646X. Available from: https://dx.doi.org/10.1111/nph.19110.
      More: https://is.muni.cz/publication/2359877/en
    16. Telomerase RNA in Hymenoptera (Insecta) switched to plant/ciliate-like biogenesis
      FAJKUS, Petr, Matej ADÁMIK, Andrew D L NELSON, Agata Magdalena KILAR, Michal FRANEK, Michal BUBENÍK, Radmila Capkova FRYDRYCHOVA, Alena VOTAVOVA, Eva SÝKOROVÁ, Jiří FAJKUS and Vratislav PEŠKA. Telomerase RNA in Hymenoptera (Insecta) switched to plant/ciliate-like biogenesis. Nucleic acids research. Oxford: Oxford University Press, 2023, vol. 51, No 1, p. 420-433. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkac1202.
      More: https://is.muni.cz/publication/2253648/en
    17. The SAGA histone acetyltransferase module targets SMC5/6 to specific genes
      MAHRÍK, Lenka, Barbora ŠTEFANOVIE, Anna MARESOVA, Jarmila PRINCOVA, Peter KOLESÁR, Edit LELKES, Celline FAUX, Dominique HELMLINGER, Martin PREVOROVSKY and Jan PALEČEK. The SAGA histone acetyltransferase module targets SMC5/6 to specific genes. EPIGENETICS & CHROMATIN. LONDON: BMC, 2023, vol. 16, No 1, p. 1-16. ISSN 1756-8935. Available from: https://dx.doi.org/10.1186/s13072-023-00480-z.
      More: https://is.muni.cz/publication/2271653/en
    18. The SAP domain of Ku facilitates its efficient loading onto DNA ends
      FULNEČEK, Jaroslav, Eva KLIMENTOVÁ, Albert CAIRO CALZADA, Soňa BUKOVČÁKOVÁ, Panagiotis ALEXIOU, Zbyněk PROKOP and Karel ŘÍHA. The SAP domain of Ku facilitates its efficient loading onto DNA ends. Nucleic Acids Research. Oxford: Oxford University Press, 2023, vol. 51, No 21, p. 11706-11716. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad850.
      More: https://is.muni.cz/publication/2359939/en
    19. Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus.
      JEDLIČKOVÁ, Veronika, Václav HEJRET, Martin DEMKO, Pavel JEDLIČKA, Marie ŠTEFKOVÁ and Helene ROBERT BOISIVON. Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus. BMC Genomics. London: BioMed Central Ltd, 2023, vol. 24, No 1, p. 1-15. ISSN 1471-2164. Available from: https://dx.doi.org/10.1186/s12864-023-09316-2.
      More: https://is.muni.cz/publication/2279918/en
    20. 16S rRNA gene primer choice impacts off-target amplification in human gastrointestinal tract biopsies and microbiome profiling
      DEISSOVÁ, Tereza, Martina ZAPLETALOVÁ, Lumír KUNOVSKÝ, Radek KROUPA, Tomáš GROLICH, Zdeněk KALA, Petra BOŘILOVÁ LINHARTOVÁ and Jan LOCHMAN. 16S rRNA gene primer choice impacts off-target amplification in human gastrointestinal tract biopsies and microbiome profiling. Nature Scientific Reports. Berlin: NATURE RESEARCH, 2023, vol. 13, No 1, p. 1-10. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-023-39575-8.
      More: https://is.muni.cz/publication/2339417/en

    2022

    1. A GP1BA Variant in a Czech Family with Monoallelic Bernard-Soulier Syndrome
      SKALNÍKOVÁ, Magdalena, Kateřina STAŇO KOZUBÍK, Jakub TRIZULJAK, Zuzana VRZALOVÁ, Lenka RADOVÁ, Kamila RÉBLOVÁ, Radka HOLBOVÁ, Terézia KURUCOVÁ, Hana SVOZILOVÁ, Jiří ŠTIKA, Ivona BLAHÁKOVÁ, Barbara DVOŘÁČKOVÁ, Marie PRUDKOVÁ, Olga STEHLÍKOVÁ, Michal ŠMÍDA, Leoš KŘEN, Petr SMEJKAL, Šárka POSPÍŠILOVÁ and Michael DOUBEK. A GP1BA Variant in a Czech Family with Monoallelic Bernard-Soulier Syndrome. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2022, vol. 23, No 2, p. 1-13. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms23020885.
      More: https://is.muni.cz/publication/1863063/en
    2. Achalasia and acromegaly: co-incidence of these diseases or a new syndrome?
      DOLINA, Jiří, Lumír KUNOVSKÝ, Radek KROUPA, Karel STARÝ, Petr JABANDŽIEV, Tereza NEŠPOROVÁ, Karel MÁCA, Tomáš ANDRAŠINA, Filip MAREK, Zdeněk KALA, Jitka VACULOVÁ, Dávid SAID, Martina ZAPLETALOVÁ, Jan LOCHMAN, Hana PÁLOVÁ, Ondřej SLABÝ, Lydie IZAKOVIČOVÁ HOLLÁ and Petra BOŘILOVÁ LINHARTOVÁ. Achalasia and acromegaly: co-incidence of these diseases or a new syndrome? Biomedical Papers. Olomouc: Palacký University Olomouc, Faculty of Medicine and Dentistry, 2022, vol. 166, No 2, p. 228-235. ISSN 1213-8118. Available from: https://dx.doi.org/10.5507/bp.2021.040.
      More: https://is.muni.cz/publication/1786617/en
    3. Evolution of TP53 abnormalities during CLL disease course is associated with telomere length changes
      OLBERTOVÁ, Helena, Karla PLEVOVÁ, Šárka PAVLOVÁ, Jitka MALCIKOVA, Jana KOTAŠKOVÁ, Kamila STRÁNSKÁ, Michaela ŠPUNAROVÁ, Martin TRBUŠEK, Veronika NAVRKALOVÁ, Barbara DVOŘÁČKOVÁ, Nikola TOM, Karol PÁL, Marie JAROŠOVÁ, Yvona BRYCHTOVÁ, Anna PANOVSKÁ, Michael DOUBEK and Šárka POSPÍŠILOVÁ. Evolution of TP53 abnormalities during CLL disease course is associated with telomere length changes. BMC Cancer. London: BMC, 2022, vol. 22, No 1, p. 1-11. ISSN 1471-2407. Available from: https://dx.doi.org/10.1186/s12885-022-09221-z.
      More: https://is.muni.cz/publication/2245079/en
    4. Generation and maturation of human iPSC-derived 3D organotypic cardiac microtissues in long-term culture
      ERGIR, Ece, la Cruz Jorge OLIVER-DE, Soraia FERNANDES, Marco CASSANI, Francesco NIRO, Daniel PEREIRA DE SOUSA, Jan VRBSKY, Vladimir VINARSKY, Ana Rubina PERESTRELO, Doriana DEBELLIS, Natália VADOVIČOVÁ, Stjepan ULDRIJAN, Francesca CAVALIERI, Stefania PAGLIARI, Heinz REDL, Peter ERTL and Giancarlo FORTE. Generation and maturation of human iPSC-derived 3D organotypic cardiac microtissues in long-term culture. Nature Scientific Reports. Berlin: NATURE RESEARCH, 2022, vol. 12, No 1, p. 1-21. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-022-22225-w.
      More: https://is.muni.cz/publication/2251439/en
    5. Genomes, repeatomes and interphase chromosome organization in the meadowfoam family (Limnanthaceae, Brassicales)
      ZUO, Sheng, Terezie MALÍK MANDÁKOVÁ, Michaela KUBOVÁ and Martin LYSÁK. Genomes, repeatomes and interphase chromosome organization in the meadowfoam family (Limnanthaceae, Brassicales). PLANT JOURNAL. ENGLAND: WILEY, 2022, vol. 110, No 5, p. 1462-1475. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15750.
      More: https://is.muni.cz/publication/1845119/en
    6. Global Transcriptomic Analysis of Bacteriophage-Host Interactions between a Kayvirus Therapeutic Phage and Staphylococcus aureus
      FINSTRLOVÁ, Adéla, Ivana MAŠLAŇOVÁ, Bob G. BLASDEL REUTER, Jiří DOŠKAŘ, Friedrich GÖTZ and Roman PANTŮČEK. Global Transcriptomic Analysis of Bacteriophage-Host Interactions between a Kayvirus Therapeutic Phage and Staphylococcus aureus. Microbiology Spectrum. Washington, DC: American Society for Microbiology, 2022, vol. 10, No 3, p. 1-13, "e00123-22", 13 pp. ISSN 2165-0497. Available from: https://dx.doi.org/10.1128/spectrum.00123-22.
      More: https://is.muni.cz/publication/1849745/en
    7. Gut-content analysis in four species, combined with comparative analysis of trophic traits, suggests an araneophagous habit for the entire family Palpimanidae (Araneae)
      PEKÁR, Stanislav, Lenka DUŠÁTKOVÁ, Táňa MACHÁČKOVÁ, Ondřej SLABÝ, Luis F. GARCÍA and Charles R. HADDAD. Gut-content analysis in four species, combined with comparative analysis of trophic traits, suggests an araneophagous habit for the entire family Palpimanidae (Araneae). Organisms Diversity & Evolution. Springer Science and Business Media Deutschland GmbH, 2022, vol. 22, No 1, p. 265-274. ISSN 1439-6092. Available from: https://dx.doi.org/10.1007/s13127-021-00525-9.
      More: https://is.muni.cz/publication/1839957/en
    8. HLA-E and HLA-F Are Overexpressed in Glioblastoma and HLA-E Increased After Exposure to Ionizing Radiation
      HRBAC, Tomas, Alena KOPKOVÁ, František SIEGL, Marek VEČEŘA, Michaela RUČKOVÁ, Tomáš KAZDA, Radim JANČÁLEK, Michal HENDRYCH, Markéta HERMANOVÁ, Václav VYBÍHAL, Pavel FADRUS, Martin SMRČKA, Filip SOKOL, Václav KUBEŠ, Radim LIPINA, Ondřej SLABÝ, Leoš KŘEN and Jiří ŠÁNA. HLA-E and HLA-F Are Overexpressed in Glioblastoma and HLA-E Increased After Exposure to Ionizing Radiation. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2022, vol. 19, No 2, p. 151-162. ISSN 1109-6535. Available from: https://dx.doi.org/10.21873/cgp.20311.
      More: https://is.muni.cz/publication/2249820/en
    9. Idahoa and Subularia: Hidden polyploid origins of two enigmatic genera of crucifers
      DOGAN, Mert, Terezie MALÍK MANDÁKOVÁ, Xinyi GUO and Martin LYSÁK. Idahoa and Subularia: Hidden polyploid origins of two enigmatic genera of crucifers. American Journal of Botany. St Louis: Botanical Soc Amer Inc, 2022, vol. 109, No 8, p. 1273-1289. ISSN 0002-9122. Available from: https://dx.doi.org/10.1002/ajb2.16042.
      More: https://is.muni.cz/publication/2240866/en
    10. KMT2C methyltransferase domain regulated INK4A expression suppresses prostate cancer metastasis
      LIMBERGER, Tanja, Michaela SCHLEDERER, Karolína TRACHTOVÁ, Ines Garces de los Fayos ALONSO, Jiaye YANG, Sandra HOEGLER, Christina STERNBERG, Vojtěch BYSTRÝ, Jan OPPELT, Boris TICHÝ, Margit SCHMEIDL, Petra KODAJOVA, Anton JAEGER, Heidi A NEUBAUER, Monika OBERHUBER, Belinda S SCHMALZBAUER, Šárka POSPÍŠILOVÁ, Helmut DOLZNIG, Wolfgang WADSAK, Zoran CULIG, Suzanne Dawn TURNER, Gerda EGGER, Sabine LAGGER and Lukas KENNER. KMT2C methyltransferase domain regulated INK4A expression suppresses prostate cancer metastasis. Molecular Cancer. LONDON: BioMed Central, 2022, vol. 21, No 1, p. 89-107. ISSN 1476-4598. Available from: https://dx.doi.org/10.1186/s12943-022-01542-8.
      More: https://is.muni.cz/publication/2212060/en
    11. LncRNA PVT1 is increased in renal cell carcinoma and affects viability and migration in vitro
      BOHOŠOVÁ, Júlia, Marek KAŠÍK, Adéla KUBÍČKOVÁ, Karolína TRACHTOVÁ, Michal STANÍK, Alexandr POPRACH and Ondřej SLABÝ. LncRNA PVT1 is increased in renal cell carcinoma and affects viability and migration in vitro. JOURNAL OF CLINICAL LABORATORY ANALYSIS. HOBOKEN: WILEY, 2022, vol. 36, No 6, p. 1-9. ISSN 0887-8013. Available from: https://dx.doi.org/10.1002/jcla.24442.
      More: https://is.muni.cz/publication/2233280/en
    12. Lyn Phosphorylates and Controls ROR1 Surface Dynamics During Chemotaxis of CLL Cells
      DAVE, Zankruti, Olga VONDÁLOVÁ BLANÁŘOVÁ, Štěpán ČADA, Pavlína JANOVSKÁ, Nikodém ZEZULA, Martin BĚHAL, Kateřina HANÁKOVÁ, Sri Ranjani GANJI, Pavel KREJČÍ, Kristína GÖMÖRYOVÁ, Helena PESCHELOVÁ, Michal ŠMÍDA, Zbyněk ZDRÁHAL, Šárka PAVLOVÁ, Jana KOTAŠKOVÁ, Šárka POSPÍŠILOVÁ and Vítězslav BRYJA. Lyn Phosphorylates and Controls ROR1 Surface Dynamics During Chemotaxis of CLL Cells. Frontiers in Cell and Developmental Biology. Frontiers Media SA, 2022, vol. 10, February 2022, p. 1-11. ISSN 2296-634X. Available from: https://dx.doi.org/10.3389/fcell.2022.838871.
      More: https://is.muni.cz/publication/1843559/en
    13. Minimal Residual Disease–Guided Intermittent Dosing in Patients With Cancer: Successful Treatment of Chemoresistant Anaplastic Large Cell Lymphoma Using Intermittent Lorlatinib Dosing
      POKORNÁ, Petra, Giannoula KLEMENT, Alžběta VAŠÍKOVÁ, Veronika KANDEROVÁ, Marta JEŽOVÁ, Kristýna NOSKOVÁ, Peter MÚDRY, Michal KÝR, Tomáš MERTA, Viera BAJČIOVÁ, Zdenka KŘENOVÁ, Hana PÁLOVÁ, Lenka ZDRAŽILOVÁ DUBSKÁ, Ondřej SLABÝ, Dalibor VALÍK and Jaroslav ŠTĚRBA. Minimal Residual Disease–Guided Intermittent Dosing in Patients With Cancer: Successful Treatment of Chemoresistant Anaplastic Large Cell Lymphoma Using Intermittent Lorlatinib Dosing. JCO PRECISION ONCOLOGY. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS, 2022, vol. 6, June 2022, p. 1-7. ISSN 2473-4284. Available from: https://dx.doi.org/10.1200/PO.21.00525.
      More: https://is.muni.cz/publication/1863363/en
    14. Single and multiple point NRAS mutations in acute myeloid leukemia: a study of 327 well molecularly characterized patients.
      ĎURINÍKOVÁ, Anna, Adam FOLTA, Filip PARDY, Jan SVATOŇ, Marie DRNCOVÁ, Barbora WEINBERGEROVÁ, Petr CETKOVSKY, Zdeněk RÁČIL, Pavel JINDRA, Tomas SZOTKOWSKI, Pavel ZAK, Jiří MAYER and Ivana JEŽÍŠKOVÁ. Single and multiple point NRAS mutations in acute myeloid leukemia: a study of 327 well molecularly characterized patients. LEUKEMIA & LYMPHOMA. ABINGDON: TAYLOR & FRANCIS LTD, 2022, vol. 63, No 13, p. 3237-3240. ISSN 1042-8194. Available from: https://dx.doi.org/10.1080/10428194.2022.2116931.
      More: https://is.muni.cz/publication/2219718/en
    15. Single-cell RNA sequencing analysis of T helper cell differentiation and heterogeneity
      JAROUŠEK, Radim, Antónia MIKULOVÁ, Petra DAĎOVÁ, Petr TAUŠ, Terézia KURUCOVÁ, Karla PLEVOVÁ, Boris TICHÝ and Lukáš KUBALA. Single-cell RNA sequencing analysis of T helper cell differentiation and heterogeneity. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. Elsevier B.V., 2022, vol. 1869, No 10, p. 1-17. ISSN 0167-4889. Available from: https://dx.doi.org/10.1016/j.bbamcr.2022.119321.
      More: https://is.muni.cz/publication/2243724/en
    16. Structure of Human Enterovirus 70 and Its Inhibition by Capsid-Binding Compounds
      FÜZIK, Tibor, Jana MORAVCOVÁ, Sergei KALYNYCH and Pavel PLEVKA. Structure of Human Enterovirus 70 and Its Inhibition by Capsid-Binding Compounds. Journal of Virology. WASHINGTON: American Society for Microbiology, 2022, vol. 96, No 17, p. 1-13. ISSN 0022-538X. Available from: https://dx.doi.org/10.1128/jvi.00604-22.
      More: https://is.muni.cz/publication/2228320/en
    17. The mechanical regulation of RNA binding protein hnRNPC in the failing heart
      MARTINO, Fabiana, Nandan Mysore VARADARAJAN, Ana Rubina PERESTRELO, Václav HEJRET, Helena DURIKOVA, Dragana VUKIĆ, Vladimir HORVATH, Francesca CAVALIERI, Frank CARUSO, Waleed S ALBIHLAL, Andre P GERBER, Mary Anne O'CONNELL, Štěpánka VAŇÁČOVÁ, Stefania PAGLIARI and Giancarlo FORTE. The mechanical regulation of RNA binding protein hnRNPC in the failing heart. Science Translational Medicine. Washington: American Association for the Advancement of Science, 2022, vol. 14, No 672, p. 1-17. ISSN 1946-6234. Available from: https://dx.doi.org/10.1126/scitranslmed.abo5715.
      More: https://is.muni.cz/publication/2265424/en
    18. Transcriptomic and proteomic profiling of peptidase expression in Fasciola hepatica eggs developing at host's body temperature
      ILGOVÁ, Jana, Jiří VOREL, Pavel ROUDNICKÝ, Lucie ŠKORPÍKOVÁ, Martin HORN and Martin KAŠNÝ. Transcriptomic and proteomic profiling of peptidase expression in Fasciola hepatica eggs developing at host's body temperature. SCIENTIFIC REPORTS. ENGLAND: NATURE PORTFOLIO, 2022, vol. 12, No 1, p. 1-18. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-022-14419-z.
      More: https://is.muni.cz/publication/2214302/en

    2021

    1. An Independent Validation Study of Candidate microRNAs as Predictive Biomarkers for Bevacizumab-based Therapy in Patients With Metastatic Colorectal Cancer
      KISS, David, Táňa MACHÁČKOVÁ, Kamila SOUČKOVÁ, Pavel FABIAN, Iveta KŘEPELKOVÁ, M. SVOBODA and Igor KISS. An Independent Validation Study of Candidate microRNAs as Predictive Biomarkers for Bevacizumab-based Therapy in Patients With Metastatic Colorectal Cancer. In vivo. ATHENS: Greece : International Institute of Anticancer Research, 2021, vol. 35, No 5, p. 2809-2814. ISSN 0258-851X. Available from: https://dx.doi.org/10.21873/invivo.12567.
      More: https://is.muni.cz/publication/1837296/en
    2. Bioinformatic strategies for the analysis of genomic aberrations detected by targeted NGS panels with clinical application
      HYNŠT, Jakub, Veronika NAVRKALOVÁ, Karol PÁL and Šárka POSPÍŠILOVÁ. Bioinformatic strategies for the analysis of genomic aberrations detected by targeted NGS panels with clinical application. PeerJ. London: PEERJ INC, 2021, vol. 9, MAR 2021, p. 1-29. ISSN 2167-8359. Available from: https://dx.doi.org/10.7717/peerj.10897.
      More: https://is.muni.cz/publication/1768001/en
    3. Comparative analysis of targeted next-generation sequencing panels for the detection of gene mutations in chronic lymphocytic leukemia: an ERIC multi-center study
      SUTTON, L.A., V. LJUNGSTROM, A. ENJUANES, D. CORTESE, A. SKAFTASON, E. TAUSCH, Kateřina STAŇO KOZUBÍK, F. NADEU, M. ARMAND, Jitka MALČÍKOVÁ, T. PANDZIC, J. FORSTER, Z. DAVIS, D. OSCIER, D. ROSSI, P. GHIA, J.C. STREFFORD, Šárka POSPÍŠILOVÁ, S. STILGENBAUER, F. DAVI, E. CAMPO, K. STAMATOPOULOS and R. ROSENQUIST. Comparative analysis of targeted next-generation sequencing panels for the detection of gene mutations in chronic lymphocytic leukemia: an ERIC multi-center study. haematologica. PAVIA: FERRATA STORTI FOUNDATION, 2021, vol. 106, No 3, p. 682-691. ISSN 0390-6078. Available from: https://dx.doi.org/10.3324/haematol.2019.234716.
      More: https://is.muni.cz/publication/1781888/en
    4. Complex Interplay of Genes Underlies Invasiveness in Fibrosarcoma Progression Model
      KRIPNEROVA, M., H.S. PARMAR, Jiří ŠÁNA, Alena KOPKOVÁ, Lenka RADOVÁ, S. SOPPER, K. BIERNACKI, J. JEDLICKA, M. KOHOUTOVA, J. KUNCOVA, J. PEYCHL, E. RUDOLF, M. CERVINKA, Z. HOUDEK, P. DVORAK, K. HOUFKOVA, M. PESTA, Z. TUMA, M. DOLEJSOVA, F. TICHANEK, V. BABUSKA, M. LEBA, Ondřej SLABÝ and J. HATINA. Complex Interplay of Genes Underlies Invasiveness in Fibrosarcoma Progression Model. Journal of Clinical Medicine. Basel: MDPI, 2021, vol. 10, No 11, p. 2297-2324. ISSN 2077-0383. Available from: https://dx.doi.org/10.3390/jcm10112297.
      More: https://is.muni.cz/publication/1782961/en
    5. Cost-effective straightforward method for captured whole mitogenome sequencing of ancient DNA
      ŠENOVSKÁ, Anna, Eva DROZDOVÁ, Ondřej VACULÍK, Filip PARDY, Kristýna BRZOBOHATÁ, Dana FIALOVÁ, Jaromír ŠMERDA and Petr KOS. Cost-effective straightforward method for captured whole mitogenome sequencing of ancient DNA. Forensic Science International. Clare (Ireland): Elsevier, 2021, vol. 319, February 2021, p. 1-7. ISSN 0379-0738. Available from: https://dx.doi.org/10.1016/j.forsciint.2020.110638.
      More: https://is.muni.cz/publication/1702916/en
    6. Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions
      GONG, B.S., D. LI, R. KUSKO, N. NOVORADOVSKAYA, Y.F. ZHANG, S.Z. WANG, C. PABON-PENA, Z.H. ZHANG, K. LAI, W.S. CAI, J.S. LOCOCO, E. LADER, T.A. RICHMOND, V.K. MITTAL, L.C. LIU, D.J. JOHANN, J.C. WILLEY, P.R. BUSHEL, Y. YU, C. XU, G.C. CHEN, D. BURGESS, S. CAWLEY, K. GIORDA, N. HASELEY, F.J. QIU, K. WILKINS, H. ARIB, C. ATTWOOLL, K. BABSON, L.L. BAO, W.J. BAO, A.B. LUCAS, H. BEST, A. BHANDARI, H. BISGIN, J. BLACKBURN, T.M. BLOMQUIST, L. BOARDMAN, B. BURGHER, D.J. BUTLER, C.J. CHANG, A. CHAUBEY, T. CHEN, M. CHIERICI, C.R. CHIN, D. CLOSE, J. CONROY, J.C. COLEMAN, D.J. CRAIG, E. CRAWFORD, A. DEL POZO, I.W. DEVESON, D. DUNCAN, A.K. ETEROVIC, X.H. FAN, J. FOOX, C. FURLANELLO, A. GHOSAL, S. GLENN, M.J. GUAN, C. HAAG, X.Y. HANG, S. HAPPE, B. HENNIGAN, J. HIPP, H.X. HONG, K. HORVATH, J.H. HU, L.Y. HUNG, M. JAROSZ, J. KERKHOF, B. KIPP, D.P. KREIL, P. LAPUNZINA, P. LI, Q.Z. LI, W.H. LI, Z.G. LI, Y. LIANG, S.Q. LIU, Z.C. LIU, C. MA, N. MARELLA, R. MARTIN-ARENAS, D.B. MEGHERBI, Q.C. MENG, P.A. MIECZKOWSKI, T. MORRISON, D. MUZNY, B.T. NING, B.L. PARSONS, C.P. PAWELETZ, M. PIROOZNIA, W.B. QU, A. RAYMOND, P. RINDLER, R. RINGLER, B. SADIKOVIC, A. SCHERER, E. SCHULZE, R. SEBRA, R. SHAKNOVICH, Q. SHI, T.L. SHI, J.C. SILLA-CASTRO, M. SMITH, M.S. LOPEZ, P. SONG, D. STETSON, M. STRAHL, A. STUART, J. SUPPLEE, P. SZANKASI, H.W. TAN, L.Y. TANG, Y.H. TAO, S. THAKKAR, D. THIERRY-MIEG, J. THIERRY-MIEG, V.J. THODIMA, D. THOMAS, Boris TICHÝ, Nikola TOM, E.V. GARCIA, S. VERMA, K. WALKER, C. WANG, J.W. WANG, Y.X. WANG, Z.N. WEN, V. WIRTA, L.H. WU, C.L. XIAO, W.Z. XIAO, S.B. XU, M. YANG, J.M. YING, S.H. YIP, G.L. ZHANG, S. ZHANG, M.R. ZHAO, Y.T. ZHENG, X.Y. ZHOU, C.E. MASON, T. MERCER, W.D. TONG, L.M. SHI, W. JONES and J.S. XU. Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions. GENOME BIOLOGY. LONDON: BIOMED CENTRAL LTD, 2021, vol. 22, No 1, p. 109-131. ISSN 1474-760X. Available from: https://dx.doi.org/10.1186/s13059-021-02315-0.
      More: https://is.muni.cz/publication/1782164/en
    7. Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction
      KOLÁŘOVÁ, Karolína, Martina NEŠPOR DADEJOVÁ, Tomáš LOJA, Gabriela LOCHMANOVÁ, Eva SÝKOROVÁ and Martina DVOŘÁČKOVÁ. Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction. The Plant Journal. Blackwell Science, 2021, vol. 106, No 1, p. 56-73. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15145.
      More: https://is.muni.cz/publication/1826514/en
    8. Dynamic miRNA changes during the process of epileptogenesis in an infantile and adult-onset model
      BENCÚROVÁ, Petra, Jiří BALOUN, Jakub HYNŠT, Jan OPPELT, Hana KUBOVÁ, Šárka POSPÍŠILOVÁ and Milan BRÁZDIL. Dynamic miRNA changes during the process of epileptogenesis in an infantile and adult-onset model. Nature Scientific Reports. London: NATURE RESEARCH, 2021, vol. 11, No 1, p. 1-14. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-021-89084-9.
      More: https://is.muni.cz/publication/1779390/en
    9. Evolution of plant telomerase RNAs: farther to the past, deeper to the roots
      FAJKUS, Petr, Agata Magdalena KILAR, A.D.L. NELSON, M. HOLA, V. PESKA, Ivana GOFFOVÁ, Miloslava FOJTOVÁ, Dagmar ZACHOVÁ, Jana FULNEČKOVÁ and Jiří FAJKUS. Evolution of plant telomerase RNAs: farther to the past, deeper to the roots. Nucleic acids research. Oxford: Oxford University Press, 2021, vol. 49, No 13, p. 7680-7694. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkab545.
      More: https://is.muni.cz/publication/1838040/en
    10. FoxO1-GAB1 axis regulates homing capacity and tonic AKT activity in chronic lymphocytic leukemia
      ŠEDA, Václav, Eva VOJÁČKOVÁ, Laura ONDRIŠOVÁ, Lenka KOŠŤÁLOVÁ, Sonali SHARMA, Tomáš LOJA, Gabriela MLADONICKÁ PAVLASOVÁ, Daniel ZICHA, Marie KUDLIČKOVÁ PEŠKOVÁ, Jan KŘIVÁNEK, Květoslava MATULOVÁ, Leoš KŘEN, V. BENES, Markéta LITZMANOVÁ, Marek BORSKÝ, Jan OPPELT, Jan VERNER, Šárka POSPÍŠILOVÁ, Yvona BRYCHTOVÁ, Anna PANOVSKÁ, Z. TAN, S.X. ZHANG, Michael DOUBEK, Kateřina AMRUZ ČERNÁ, Jiří MAYER and Marek MRÁZ. FoxO1-GAB1 axis regulates homing capacity and tonic AKT activity in chronic lymphocytic leukemia. Blood. Washington DC, USA: American Society of Hematology, 2021, vol. 138, No 9, p. 758-772. ISSN 0006-4971. Available from: https://dx.doi.org/10.1182/blood.2020008101.
      More: https://is.muni.cz/publication/1813384/en
    11. Histopathology of laboratory-reared Nothobranchius fishes: Mycobacterial infections versus neoplastic lesions
      DYKOVÁ, Iva, Jakub ŽÁK, Martin REICHARD, Kamila SOUČKOVÁ, Ondřej SLABÝ, Vojtěch BYSTRÝ and Radim BLAŽEK. Histopathology of laboratory-reared Nothobranchius fishes: Mycobacterial infections versus neoplastic lesions. Journal of Fish Diseases. Hoboken: Wiley, 2021, vol. 44, No 8, p. 1179-1190. ISSN 0140-7775. Available from: https://dx.doi.org/10.1111/jfd.13378.
      More: https://is.muni.cz/publication/1785678/en
    12. Hypermethylation of CD19 promoter enables antigen-negative escape to CART-19 in vivo and in vitro
      LEDEREROVÁ, Aneta, Lenka DOSTÁLOVÁ, Veronika KOZLOVÁ, Helena PESCHELOVÁ, Adriana LADUNGOVÁ, Martin ČULEN, Tomáš LOJA, Jan VERNER, Šárka POSPÍŠILOVÁ, Michal ŠMÍDA and Veronika MANČÍKOVÁ. Hypermethylation of CD19 promoter enables antigen-negative escape to CART-19 in vivo and in vitro. Journal for ImmunoTherapy of Cancer. Switzerland: Springer International Publishing AG, 2021, vol. 9, No 8, p. 1-8. ISSN 2051-1426. Available from: https://dx.doi.org/10.1136/jitc-2021-002352.
      More: https://is.muni.cz/publication/1813004/en
    13. LYmphoid NeXt-Generation Sequencing (LYNX) Panel A Comprehensive Capture-Based Sequencing Tool for the Analysis of Prognostic and Predictive Markers in Lymphoid Malignancies
      NAVRKALOVÁ, Veronika, Karla PLEVOVÁ, Jakub HYNŠT, Karol PÁL, Andrea MAREČKOVÁ, Tomáš REIGL, Hana JELÍNKOVÁ, Zuzana VRZALOVÁ, Kamila STRÁNSKÁ, Šárka PAVLOVÁ, Anna PANOVSKÁ, Andrea JANÍKOVÁ, Michael DOUBEK, Jana KOTAŠKOVÁ and Šárka POSPÍŠILOVÁ. LYmphoid NeXt-Generation Sequencing (LYNX) Panel A Comprehensive Capture-Based Sequencing Tool for the Analysis of Prognostic and Predictive Markers in Lymphoid Malignancies. The journal of molecular diagnostics. Bethesda, MD: American Society for Investigative Pathology/Association for Molecular Pathology, 2021, vol. 23, No 8, p. 959-974. ISSN 1525-1578. Available from: https://dx.doi.org/10.1016/j.jmoldx.2021.05.007.
      More: https://is.muni.cz/publication/1836805/en
    14. miR-29 Modulates CD40 Signaling in Chronic Lymphocytic Leukemia by Targeting TRAF4: an Axis Affected by BCR inhibitors
      SHARMA, Sonali, Gabriela MLADONICKÁ PAVLASOVÁ, Václav ŠEDA, Kateřina AMRUZ ČERNÁ, Eva VOJÁČKOVÁ, Daniel FILIP, Laura ONDRIŠOVÁ, Veronika ŠANDOVÁ, Lenka KOŠŤÁLOVÁ, Pedro FARIA ZENI, Marek BORSKÝ, Jan OPPELT, Květoslava LIŠKOVÁ, Leoš KŘEN, Andrea JANÍKOVÁ, Šárka POSPÍŠILOVÁ, Stacey M. FERNANDES, Medhat SHEHATA, Laura Z. RASSENTI, Ulrich JAEGER, Michael DOUBEK, Matthew S. DAVIDS, Jennifer R. BROWN, Jiří MAYER, Thomas J. KIPPS and Marek MRÁZ. miR-29 Modulates CD40 Signaling in Chronic Lymphocytic Leukemia by Targeting TRAF4: an Axis Affected by BCR inhibitors. Blood. Washington, DC: American Society of Hematology, 2021, vol. 137, No 18, p. 2481-2494. ISSN 0006-4971. Available from: https://dx.doi.org/10.1182/blood.2020005627.
      More: https://is.muni.cz/publication/1710496/en
    15. Multiscale Analysis of Extracellular Matrix Remodeling in the Failing Heart
      PERESTRELO, A. R., A. C. SILVA, J. OLIVER-DE LA CRUZ, Fabiana MARTINO, Vladimir HORVATH, Guido CALUORI, Ondrej POLANSKY, Vladimir VINARSKY, G. AZZATO, G. DE MARCO, Víta ŽAMPACHOVÁ, Petr SKLÁDAL, S. PAGLIARI, A. RAINER, P. PINTO-DO-O, A. CARAVELLA, Kamila KOCI, D. S. NASCIMENTO and Giancarlo FORTE. Multiscale Analysis of Extracellular Matrix Remodeling in the Failing Heart. Circulation research. Dallas: American Heart Association, 2021, vol. 128, No 1, p. 24-38. ISSN 0009-7330. Available from: https://dx.doi.org/10.1161/CIRCRESAHA.120.317685.
      More: https://is.muni.cz/publication/1827937/en
    16. Nucleolar rDNA folds into condensed foci with a specific combination of epigenetic marks
      KUTASHEV, Konstantin, Michal FRANEK, Klev DIAMANTI, Jan KOMOROWSKI, Marie OLSINOVA and Martina DVOŘÁČKOVÁ. Nucleolar rDNA folds into condensed foci with a specific combination of epigenetic marks. Plant Journal. Hoboken: Wiley, 2021, vol. 105, No 6, p. 1534-1548. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15130.
      More: https://is.muni.cz/publication/1734976/en
    17. Small RNA Sequencing Identifies PIWI-Interacting RNAs Deregulated in Glioblastoma-piR-9491 and piR-12488 Reduce Tumor Cell Colonies In Vitro
      BARTOS, M., František SIEGL, Alena KOPKOVÁ, Lenka RADOVÁ, Jan OPPELT, Marek VEČEŘA, Tomáš KAZDA, Radim JANČÁLEK, Michal HENDRYCH, Markéta HERMANOVÁ, P. KASPAROVA, Z. PLESKACOVA, Václav VYBÍHAL, P. FADRUS, M. SMRCKA, R. LAKOMY, R. LIPINA, T. CESAK, Ondřej SLABÝ and Jiří ŠÁNA. Small RNA Sequencing Identifies PIWI-Interacting RNAs Deregulated in Glioblastoma-piR-9491 and piR-12488 Reduce Tumor Cell Colonies In Vitro. Frontiers in Oncology. Lausanne: Frontiers Media S.A., 2021, vol. 11, AUG, p. 1-11. ISSN 2234-943X. Available from: https://dx.doi.org/10.3389/fonc.2021.707017.
      More: https://is.muni.cz/publication/1804764/en
    18. Staphylococcus epidermidis Phages Transduce Antimicrobial Resistance Plasmids and Mobilize Chromosomal Islands
      FIŠAROVÁ, Lenka, Tibor BOTKA, Xin DU, Ivana MAŠLAŇOVÁ, Pavol BÁRDY, Roman PANTŮČEK, Martin BENEŠÍK, Pavel ROUDNICKÝ, Volker WINSTEL, Jesper LARSEN, Ralf ROSENSTEIN, Andreas PESCHEL and Jiří DOŠKAŘ. Staphylococcus epidermidis Phages Transduce Antimicrobial Resistance Plasmids and Mobilize Chromosomal Islands. mSphere. Washington, DC, USA: American Society for Microbiology, 2021, vol. 6, No 3, p. 1-19. ISSN 2379-5042. Available from: https://dx.doi.org/10.1128/mSphere.00223-21.
      More: https://is.muni.cz/publication/1769437/en
    19. STAT3 and TP53 mutations associate with poor prognosis in anaplastic large cell lymphoma
      LOBELLO, Cosimo, Boris TICHÝ, Vojtěch BYSTRÝ, Lenka RADOVÁ, Daniel FILIP, Marek MRÁZ, I.A. MONTES-MOJARRO, N. PROKOPH, H. LAROSE, H.C. LIANG, G.G. SHARMA, L. MOLOGNI, D. BELADA, K. KAMARADOVA, F. FEND, C. GAMBACORTI-PASSERINI, O. MERKEL, Suzanne Dawn TURNER, Andrea JANÍKOVÁ and Šárka POSPÍŠILOVÁ. STAT3 and TP53 mutations associate with poor prognosis in anaplastic large cell lymphoma. Leukemia. London: Nature Publishing Group, 2021, vol. 35, No 5, p. 1500-1505. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/s41375-020-01093-1.
      More: https://is.muni.cz/publication/1781892/en
    20. Super-enhancer-based identification of a BATF3/IL-2R-module reveals vulnerabilities in anaplastic large cell lymphoma
      LIANG, H.C., M. COSTANZA, N. PRUTSCH, M.W. ZIMMERMAN, E. GURNHOFER, I.A. MONTES-MOJARRO, B.J. ABRAHAM, N. PROKOPH, S. STOIBER, S. TANGERMANN, Cosimo LOBELLO, Jan OPPELT, I. ANAGNOSTOPOULOS, T. HIELSCHER, S. PERVEZ, W. KLAPPER, F. ZAMMARCHI, D.A. SILVA, K.C. GARCIA, D. BAKER, M. JANZ, N. SCHLEUSSNER, F. FEND, Šárka POSPÍŠILOVÁ, A. JANIKOVA, J. WALLWITZ, D. STOIBER, I. SIMONITSCH-KLUPP, L. CERRONI, S. PILERI, L. DE LEVAL, D. SIBON, V. FATACCIOLI, P. GAULARD, C. ASSAF, F. KNORR, C. DAMM-WELK, W. WOESSMANN, Suzanne Dawn TURNER, A.T. LOOK, S. MATHAS, L. KENNER and O. MERKEL. Super-enhancer-based identification of a BATF3/IL-2R-module reveals vulnerabilities in anaplastic large cell lymphoma. Nature Communications. London: Nature Publishing Group, 2021, vol. 12, No 1, p. 5577-5588. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-021-25379-9.
      More: https://is.muni.cz/publication/1812960/en
    21. The food web in a subterranean ecosystem is driven by intraguild predation
      PARIMUCHOVÁ, Andrea, Lenka DUŠÁTKOVÁ, Ľubomír KOVÁČ, Táňa MACHÁČKOVÁ, Ondřej SLABÝ and Stanislav PEKÁR. The food web in a subterranean ecosystem is driven by intraguild predation. Nature Scientific Reports. London: NATURE RESEARCH, 2021, vol. 11, No 1, p. 4994-5004. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-021-84521-1.
      More: https://is.muni.cz/publication/1793242/en
    22. Thyroid and androgen receptor signaling are antagonized by mu-Crystallin in prostate cancer
      AKSOY, O., J. PENCIK, M. HARTENBACH, A.A. MOAZZAMI, M. SCHLEDERER, T. BALBER, A. VARADY, C. PHILIPPE, P.A. BALTZER, B. MAZUMDER, J.B. WHITCHURCH, C.J. ROBERTS, A. HAITEL, M. HERAC, M. SUSANI, M. MITTERHAUSER, R. MARCULESCU, J. STANGL-KREMSER, M.R. HASSLER, G. KRAMER, S.F. SHARIAT, Suzanne Dawn TURNER, Boris TICHÝ, Jan OPPELT, Šárka POSPÍŠILOVÁ, S. HARTENBACH, S. TANGERMANN, G. EGGER, H.A. NEUBAUER, R. MORIGGL, Z. CULIG, G. GREINER, G. HOERMANN, M. HACKER, D.M. HEERY, O. MERKEL and L. KENNER. Thyroid and androgen receptor signaling are antagonized by mu-Crystallin in prostate cancer. International journal of cancer. HOBOKEN: International Union Against Cancer, 2021, vol. 148, No 3, p. 731-747. ISSN 0020-7136. Available from: https://dx.doi.org/10.1002/ijc.33332.
      More: https://is.muni.cz/publication/1781883/en

    2020

    1. Epilepsy miRNA Profile Depends on the Age of Onset in Humans and Rats
      BALOUN, Jiří, Petra BENCÚROVÁ, Tereza TOTKOVÁ, Hana KUBOVÁ, Markéta HERMANOVÁ, Michal HENDRYCH, Martin PAIL, Šárka POSPÍŠILOVÁ and Milan BRÁZDIL. Epilepsy miRNA Profile Depends on the Age of Onset in Humans and Rats. Frontiers in Neuroscience. Lausanne: Frontiers Media S.A., 2020, vol. 14, SEP, p. 924-937. ISSN 1662-453X. Available from: https://dx.doi.org/10.3389/fnins.2020.00924.
      More: https://is.muni.cz/publication/1692357/en
    2. Genome sequences of two Antarctic strains of Pseudomonas prosekii: insights into adaptation to extreme conditions
      SNOPKOVÁ, Kateřina, Darina ČEJKOVÁ, Kristýna DUFKOVÁ, Ivo SEDLÁČEK and David ŠMAJS. Genome sequences of two Antarctic strains of Pseudomonas prosekii: insights into adaptation to extreme conditions. Archives of Microbiology. New York: Springer, 2020, vol. 202, No 3, p. 447-454. ISSN 0302-8933. Available from: https://dx.doi.org/10.1007/s00203-019-01755-4.
      More: https://is.muni.cz/publication/1591638/en
    3. Human-like telomeres in Zostera marina reveal a mode of transition from the plant to the human telomeric sequences
      PEŠKA, Vratislav, Martin MÁTL, Terezie MANDÁKOVÁ, Daniel VITALES, Petr FAJKUS, Jiří FAJKUS and Sonia GARCIA. Human-like telomeres in Zostera marina reveal a mode of transition from the plant to the human telomeric sequences. Journal of Experimental Botany. Oxford: Oxford University Press, 2020, vol. 71, No 19, p. 5786-5793. ISSN 0022-0957. Available from: https://dx.doi.org/10.1093/jxb/eraa293.
      More: https://is.muni.cz/publication/1703777/en
    4. Characterization of Staphylococcus intermedius Group Isolates Associated with Animals from Antarctica and Emended Description of Staphylococcus delphini
      VRBOVSKÁ, Veronika, Ivo SEDLÁČEK, Michal ZEMAN, Pavel ŠVEC, Vojtěch KOVAŘOVIC, Ondrej ŠEDO, Monika LAICHMANOVÁ, Jiří DOŠKAŘ and Roman PANTŮČEK. Characterization of Staphylococcus intermedius Group Isolates Associated with Animals from Antarctica and Emended Description of Staphylococcus delphini. Microorganisms. Basel: MDPI, 2020, vol. 8, No 2, p. "204-1"-"204-18", 18 pp. ISSN 2076-2607. Available from: https://dx.doi.org/10.3390/microorganisms8020204.
      More: https://is.muni.cz/publication/1644477/en
    5. Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea)
      ROUDNICKÝ, Pavel, David POTĚŠIL, Zbyněk ZDRÁHAL, Milan GELNAR and Martin KAŠNÝ. Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea). PLOS ONE. San Francisco: Public Library of Science, 2020, vol. 15, No 6, p. 1-15. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0231681.
      More: https://is.muni.cz/publication/1673338/en
    6. MiR-215-5p Reduces Liver Metastasis in an Experimental Model of Colorectal Cancer through Regulation of ECM-Receptor Interactions and Focal Adhesion
      MACHÁČKOVÁ, Táňa, Petra VYCHYTILOVÁ, Kamila SOUČKOVÁ, Karolína TRACHTOVÁ, Dominika BRCHNELOVÁ, Marek SVOBODA, Igor KISS, Vladimír PROCHÁZKA, Zdeněk KALA and Ondřej SLABÝ. MiR-215-5p Reduces Liver Metastasis in an Experimental Model of Colorectal Cancer through Regulation of ECM-Receptor Interactions and Focal Adhesion. Cancers. BASEL: MDPI, 2020, vol. 12, No 12, p. 1-21. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers12123518.
      More: https://is.muni.cz/publication/1744849/en
    7. Novel Splicing Variant in the PMM2 Gene in a Patient With PMM2-CDG Syndrome Presenting With Pericardial Effusion: A Case Report
      SLABÁ, Kateřina, Hana NOSKOVÁ, Petra VESELÁ, Jana TUČKOVÁ, Hana JIČÍNSKÁ, Tomáš HONZÍK, Hana HANSÍKOVÁ, Petra KLEIBLOVÁ, Petr ŠTOURAČ, Petr JABANDŽIEV, Ondřej SLABÝ and Dagmar PROCHÁZKOVÁ. Novel Splicing Variant in the PMM2 Gene in a Patient With PMM2-CDG Syndrome Presenting With Pericardial Effusion: A Case Report. Frontiers in Genetics. Lausanne: Frontiers, 2020, vol. 11, October 2020, p. 1-7. ISSN 1664-8021. Available from: https://dx.doi.org/10.3389/fgene.2020.561054.
      More: https://is.muni.cz/publication/1686525/en
    8. Nuclear inclusions of pathogenic ataxin-1 induce oxidative stress and perturb the protein synthesis machinery
      LAIDOU, Stamatia, Gregorio ALANIS-LOBATO, Jan PŘIBYL, Tamás RASKÓ, Boris TICHÝ, Kamil MIKULÁŠEK, Maria TSAGIOPOULOU, Jan OPPELT, Georgia KASTRINAKI, Maria LEFAKI, Manvendra SINGH, Annika ZINK, Niki CHONDROGIANNI, Fotis PSOMOPOULOS, Alessandro PRIGIONE, Zoltan IVICS, Šárka POSPÍŠILOVÁ, Petr SKLÁDAL, Zsuzsanna IZSVAK, Miguel A. ANDRADE-NAVARRO and Spyros PETRAKIS. Nuclear inclusions of pathogenic ataxin-1 induce oxidative stress and perturb the protein synthesis machinery. Redox Biology. Amsterdam: Elsevier, 2020, vol. 32, MAY 2020, p. 1-16. ISSN 2213-2317. Available from: https://dx.doi.org/10.1016/j.redox.2020.101458.
      More: https://is.muni.cz/publication/1689437/en
    9. Recurrent gene mutations detected in canine mast cell tumours by next generation sequencing
      VOZDOVA, M., S. KUBICKOVA, Karol PÁL, J. FROHLICH, P. FICTUM and J. RUBES. Recurrent gene mutations detected in canine mast cell tumours by next generation sequencing. VETERINARY AND COMPARATIVE ONCOLOGY. HOBOKEN: WILEY, 2020, vol. 18, No 4, p. 509-518. ISSN 1476-5810. Available from: https://dx.doi.org/10.1111/vco.12572.
      More: https://is.muni.cz/publication/1750438/en

    2019

    1. A novel germline mutation of the SFTPA1 gene in familial interstitial pneumonia
      DOUBKOVÁ, Martina, Kateřina STAŇO KOZUBÍK, Lenka RADOVÁ, Michaela PEŠOVÁ, Jakub TRIZULJAK, Karol PÁL, Klára SVOBODOVÁ, Kamila RÉBLOVÁ, Hana SVOZILOVÁ, Zuzana VRZALOVÁ, Šárka POSPÍŠILOVÁ and Michael DOUBEK. A novel germline mutation of the SFTPA1 gene in familial interstitial pneumonia. HUMAN GENOME VARIATION. LONDON: NATURE PUBLISHING GROUP, 2019, vol. 6, MAR, p. nestrankovano, 6 pp. ISSN 2054-345X. Available from: https://dx.doi.org/10.1038/s41439-019-0044-z.
      More: https://is.muni.cz/publication/1538917/en
    2. Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in <i>Clostridium beijerinckii</i> NRRL B-598 at the transcriptomic level
      PATAKOVA, Petra, Barbora BRANSKA, Karel SEDLAR, Maryna VASYLKIVSKA, Katerina JURECKOVA, Jan KOLEK, Pavlina KOSCOVA and Ivo PROVAZNIK. Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in <i>Clostridium beijerinckii</i> NRRL B-598 at the transcriptomic level. Nature Scientific Reports. London: NATURE RESEARCH, 2019, vol. 9, Feb, p. 1-21. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-018-37679-0.
      More: https://is.muni.cz/publication/2409437/en
    3. Activation of innate immunity by mitochondrial dsRNA in mouse cells lacking p53 protein
      WIATREK-MOUMOULIDIS, Dagmara Marta, Maria Elena CANDELA, Jiří SEDMÍK, Jan OPPELT, Liam KEEGAN and Mary Anne O'CONNELL. Activation of innate immunity by mitochondrial dsRNA in mouse cells lacking p53 protein. RNA. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 2019, vol. 25, No 6, p. 713-726. ISSN 1355-8382. Available from: https://dx.doi.org/10.1261/rna.069625.118.
      More: https://is.muni.cz/publication/1517696/en
    4. Activation-induced deaminase and its splice variants associate with trisomy 12 in chronic lymphocytic leukemia
      ZÁPRAŽNÁ, Kristína, Kamila RÉBLOVÁ, V. SVOBODOVA, Lenka RADOVÁ, Vojtěch BYSTRÝ, Jiří BALOUN, Kristina ĎURECHOVÁ, Nikola TOM, Tomáš LOJA, Martina BUREŠOVÁ, Kamila STRÁNSKÁ, Alexandra OLTOVÁ, Michael DOUBEK, M.L. ATCHISON, Martin TRBUŠEK, Jitka MALČÍKOVÁ and Šárka POSPÍŠILOVÁ. Activation-induced deaminase and its splice variants associate with trisomy 12 in chronic lymphocytic leukemia. Annals of hematology. New York: Springer Verlag, 2019, vol. 98, No 2, p. 423-435. ISSN 0939-5555. Available from: https://dx.doi.org/10.1007/s00277-018-3520-5.
      More: https://is.muni.cz/publication/1498916/en
    5. ATM and TP53 mutations show mutual exclusivity but distinct clinical impact in mantle cell lymphoma patients
      MAREČKOVÁ, Andrea, Jitka MALČÍKOVÁ, Nikola TOM, Karol PÁL, Lenka RADOVÁ, David ŠÁLEK, Andrea JANÍKOVÁ, Mojmír MOULIS, Jana ŠMARDOVÁ, Leoš KŘEN, Jiří MAYER and Martin TRBUŠEK. ATM and TP53 mutations show mutual exclusivity but distinct clinical impact in mantle cell lymphoma patients. LEUKEMIA & LYMPHOMA. LONDON: INFORMA HEALTHCARE, 2019, vol. 60, No 6, p. 1420-1428. ISSN 1042-8194. Available from: https://dx.doi.org/10.1080/10428194.2018.1542144.
      More: https://is.muni.cz/publication/1545496/en
    6. CLL cells cumulate genetic aberrations prior to the first therapy even in outwardly inactive disease phase (CLL cells cumulate genetic aberrations prior to the first therapy even in outwardly inactive disease phase.)
      HERNANDEZ-SANCHEZ, M., Jana KOTAŠKOVÁ, A.E. RODRIGUEZ, Lenka RADOVÁ, D. TAMBORERO, M. ABAIGAR, Karla PLEVOVÁ, R. BENITO, Nikola TOM, M. QUIJADA-ALAMO, Vasileios BIKOS, A.A. MARTIN, Karol PÁL, A. DE COCA, Michael DOUBEK, N. LOPEZ-BIGAS, J.M. HERNANDEZ-RIVAS and Šárka POSPÍŠILOVÁ. CLL cells cumulate genetic aberrations prior to the first therapy even in outwardly inactive disease phase (CLL cells cumulate genetic aberrations prior to the first therapy even in outwardly inactive disease phase.). Leukemia. London: Nature Publishing Group, 2019, vol. 33, No 2, p. 518-522. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/s41375-018-0255-1.
      More: https://is.muni.cz/publication/1492291/en
    7. Deficiency and haploinsufficiency of histone macroH2A1.1 in mice recapitulate hematopoietic defects of human myelodysplastic syndrome
      BERESHCHENKO, Oxana, Oriana LO RE, Fedor NIKULENKOV, Sara FLAMINI, Jana KOTAŠKOVÁ, Tommaso MAZZA, Marguerite-Mari LE PANNERER, Marcus BUSCHBECK, Cesarina GIALLONGO, Giuseppe PALUMBO, Giovanni LI VOLTI, Valerio PAZIENZA, Libor ČERVINEK, Carlo RICCARDI, Lumír KREJČÍ, Šárka POSPÍŠILOVÁ, A. Francis STEWART and Manlio VINCIGUERRA. Deficiency and haploinsufficiency of histone macroH2A1.1 in mice recapitulate hematopoietic defects of human myelodysplastic syndrome. CLINICAL EPIGENETICS. LONDON: BMC, 2019, vol. 11, No 1, p. 1-14. ISSN 1868-7075. Available from: https://dx.doi.org/10.1186/s13148-019-0724-z.
      More: https://is.muni.cz/publication/1604822/en
    8. Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images
      MACHÁLKOVÁ, Markéta, Barbora PAVLATOVSKÁ, Jan MICHÁLEK, Adam PRUŠKA, Karel ŠTĚPKA, Tereza NEČASOVÁ, Katarzyna Anna RADASZKIEWICZ, Michal KOZUBEK, Jan ŠMARDA, Jan PREISLER and Jarmila NAVRÁTILOVÁ. Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images. Analytical Chemistry. American Chemical Society, 2019, vol. 91, No 21, p. 13475-13484. ISSN 0003-2700. Available from: https://dx.doi.org/10.1021/acs.analchem.9b02462.
      More: https://is.muni.cz/publication/1583136/en
    9. Lectin PLL3, a Novel Monomeric Member of the Seven-Bladed beta-Propeller Lectin Family
      FALTINEK, Lukáš, Eva FUJDIAROVÁ, Filip MELICHER, Josef HOUSER, Martina KAŠÁKOVÁ, Nikolay KONDAKOV, Leonid KONONOV, Kamil PARKAN, Sébastien VIDAL and Michaela WIMMEROVÁ. Lectin PLL3, a Novel Monomeric Member of the Seven-Bladed beta-Propeller Lectin Family. Molecules. Basel: MDPI, 2019, vol. 24, No 24, p. 1-20. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules24244540.
      More: https://is.muni.cz/publication/1600482/en
    10. Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering
      MANDÁKOVÁ, Terezie, Milan POUCH, J.R. BROCK, I.A. AL-SHEHBAZ and Martin LYSÁK. Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2019, vol. 31, No 11, p. 2596-2612. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.19.00366.
      More: https://is.muni.cz/publication/1611618/en
    11. Substrate mechanics controls adipogenesis through YAP phosphorylation by dictating cell spreading
      OLIVER-DE, La Cruz Jorge, Giorgia NARDONE, Jan VRBSKY, Antonio POMPEIANO, Ana Rubina PERESTRELO, Francesco CAPRADOSSI, Katarina MELAJOVA, Petr FILIPENSKY and Giancarlo FORTE. Substrate mechanics controls adipogenesis through YAP phosphorylation by dictating cell spreading. Biomaterials. OXFORD: ELSEVIER SCI LTD, 2019, vol. 205, Jun, p. 64-80. ISSN 0142-9612. Available from: https://dx.doi.org/10.1016/j.biomaterials.2019.03.009.
      More: https://is.muni.cz/publication/2410537/en
    12. Telomerase RNAs in land plants
      FAJKUS, Petr, Vratislav PEŠKA, Michal ZÁVODNÍK, Miloslava FOJTOVÁ, Jana FULNEČKOVÁ, Šimon DOBIAS, Agata Magdalena KILAR, Martina DVOŘÁČKOVÁ, Dagmar ZACHOVÁ, Ivona NEČASOVÁ, Jason SIMS, Eva SÝKOROVÁ and Jiří FAJKUS. Telomerase RNAs in land plants. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, No 18, p. 9842-9856. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz695.
      More: https://is.muni.cz/publication/1561456/en
    13. Transcriptome analysis of human brain microvascular endothelial cells response to <i>Neisseria meningitidis</i> and its antigen MafA using RNA-seq
      KANOVA, Evelina, Zuzana TKACOVA, Katarina BHIDE, Amod KULKARNI, Irene JIMENEZ-MUNGUIA, Patricia MERTINKOVA, Monika DRAZOVSKA, Punit TYAGI and Mangesh BHIDE. Transcriptome analysis of human brain microvascular endothelial cells response to <i>Neisseria meningitidis</i> and its antigen MafA using RNA-seq. Nature Scientific Reports. London: NATURE RESEARCH, 2019, vol. 9, Dec, p. 1-16. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-019-55409-y.
      More: https://is.muni.cz/publication/2409586/en
    14. Transcriptomic Analysis Reveals the Roles of Detoxification Systems in Response to Mercury in <i>Chromera velia</i>
      SHARAF, Abdoallah, De Michele ROBERTO, Ayush SHARMA, Safieh FAKHARI and Miroslav OBORNIK. Transcriptomic Analysis Reveals the Roles of Detoxification Systems in Response to Mercury in <i>Chromera velia</i>. Biomolecules. Basel, Switzerland: MDPI AG, 2019, vol. 9, No 11, p. 1-25. ISSN 2218-273X. Available from: https://dx.doi.org/10.3390/biom9110647.
      More: https://is.muni.cz/publication/2409618/en

    2018

    1. A novel germline mutation in GP1BA gene N-terminal domain in monoallelic Bernard-Soulier syndrome
      TRIZULJAK, Jakub, Kateřina STAŇO KOZUBÍK, Lenka RADOVÁ, Michaela PEŠOVÁ, Karol PÁL, Kamila RÉBLOVÁ, Olga STEHLÍKOVÁ, Petr SMEJKAL, Jiřina ZAVŘELOVÁ, M. PACEJKA, Jiří MAYER, Šárka POSPÍŠILOVÁ and Michael DOUBEK. A novel germline mutation in GP1BA gene N-terminal domain in monoallelic Bernard-Soulier syndrome. Platelets. PHILADELPHIA: TAYLOR & FRANCIS INC, 2018, vol. 29, No 8, p. 827-833. ISSN 0953-7104. Available from: https://dx.doi.org/10.1080/09537104.2018.1529300.
      More: https://is.muni.cz/publication/1498777/en
    2. Low-burden TP53 mutations in chronic phase of myeloproliferative neoplasms: association with age, hydroxyurea administration, disease type and JAK2 mutational status (Low- burden TP53 mutations in chronic phase of myeloproliferative neoplasms: association with age, hydroxyurea administration, disease type and JAK2 mutational status.)
      KUBEŠOVÁ, Blanka, Šárka PAVLOVÁ, Jitka MALČÍKOVÁ, Jitka KABÁTHOVÁ, Lenka RADOVÁ, Nikola TOM, Boris TICHÝ, Karla PLEVOVÁ, Barbara KANTOROVÁ, Kristýna FIEDOROVÁ, M. SLAVIKOVA, Vojtěch BYSTRÝ, Jarmila KISSOVÁ, B. GISSLINGER, H. GISSLINGER, Miroslav PENKA, Jiří MAYER, R. KRALOVICS, Šárka POSPÍŠILOVÁ and Michael DOUBEK. Low-burden TP53 mutations in chronic phase of myeloproliferative neoplasms: association with age, hydroxyurea administration, disease type and JAK2 mutational status (Low- burden TP53 mutations in chronic phase of myeloproliferative neoplasms: association with age, hydroxyurea administration, disease type and JAK2 mutational status.). Leukemia. London: Nature Publishing Group, 2018, vol. 32, No 2, p. 450-461. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/leu.2017.230.
      More: https://is.muni.cz/publication/1404544/en
    3. Multiple productive IGH rearrangements denote oligoclonality even in immunophenotypically monoclonal CLL
      BRÁZDILOVÁ, Kamila, Karla PLEVOVÁ, Hana SKUHROVÁ FRANCOVÁ, Helena OLBERTOVÁ, Marek BORSKÝ, Vasileios BIKOS, Jitka MALČÍKOVÁ, Alexandra OLTOVÁ, Jana KOTAŠKOVÁ, Boris TICHÝ, Yvona BRYCHTOVÁ, Jiří MAYER, Michael DOUBEK and Šárka POSPÍŠILOVÁ. Multiple productive IGH rearrangements denote oligoclonality even in immunophenotypically monoclonal CLL. Leukemia. London: Nature Publishing Group, 2018, vol. 32, No 1, p. 234-236. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/leu.2017.274.
      More: https://is.muni.cz/publication/1400042/en
    4. ToTem: a tool for variant calling pipeline optimization
      TOM, Nikola, O. TOM, Jitka MALČÍKOVÁ, Šárka PAVLOVÁ, Blanka KUBEŠOVÁ, T. RAUSCH, M. KOLARIK, V. BENES, Vojtěch BYSTRÝ and Šárka POSPÍŠILOVÁ. ToTem: a tool for variant calling pipeline optimization. BMC Bioinformatics. London: BioMed Central, 2018, vol. 19, JUN, p. 243-251. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-018-2227-x.
      More: https://is.muni.cz/publication/1443180/en
    5. Transcription factor YY1 can control AID-mediated mutagenesis in mice
      ZÁPRAŽNÁ, Kristína, A. BASU, Nikola TOM, V. JHA, S. HODAWADEKAR, Lenka RADOVÁ, Jitka MALČÍKOVÁ, Boris TICHÝ, Šárka POSPÍŠILOVÁ and M.L. ATCHISON. Transcription factor YY1 can control AID-mediated mutagenesis in mice. EUROPEAN JOURNAL OF IMMUNOLOGY. HOBOKEN: WILEY, 2018, vol. 48, No 2, p. 273-282. ISSN 0014-2980. Available from: https://dx.doi.org/10.1002/eji.201747065.
      More: https://is.muni.cz/publication/1410132/en

    2017

    1. GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data
      PÁL, Karol, Vojtěch BYSTRÝ, Tomáš REIGL, Martin DEMKO, Adam KREJČÍ, T. TOULOUMENIDOU, E. STALIKA, Boris TICHÝ, P. GHIA, K. STAMATOPOULOS, Šárka POSPÍŠILOVÁ, Jitka MALČÍKOVÁ and Nikos DARZENTAS. GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. Bioinformatics. Oxford: Oxford University Press, 2017, vol. 33, No 23, p. 3802-3804. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btx423.
      More: https://is.muni.cz/publication/1403133/en
    2. MicroRNA and mesial temporal lobe epilepsy with hippocampal sclerosis: Whole miRNome profiling of human hippocampus
      BENCÚROVÁ, Petra, Jiří BALOUN, Kateřina MUSILOVÁ, Lenka RADOVÁ, Boris TICHÝ, Martin PAIL, Martin ZEMAN, Eva BRICHTOVÁ, Markéta HERMANOVÁ, Šárka POSPÍŠILOVÁ, Marek MRÁZ and Milan BRÁZDIL. MicroRNA and mesial temporal lobe epilepsy with hippocampal sclerosis: Whole miRNome profiling of human hippocampus. Epilepsia. Blackwell Science, 2017, vol. 58, No 10, p. 1782-1793. ISSN 0013-9580. Available from: https://dx.doi.org/10.1111/epi.13870.
      More: https://is.muni.cz/publication/1397097/en

    2013

    1. Next-Gen sequencing technologies and applications
      TICHÝ, Boris. Next-Gen sequencing technologies and applications. 2013.
      More: https://is.muni.cz/publication/1341640/en
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