Publication Records

DOSTÁLOVÁ, Lenka, Aneta LEDEREROVÁ, Helena PESCHELOVÁ, Václav HEJRET and Michal ŠMÍDA. CRISPR/Cas9 knockout screening revealed genes involved in CD20 regulation. In Annual PhD conference Biomedical sciences, Brno. 2022.

PEŠOVÁ, Michaela, Veronika MANČÍKOVÁ, Robert HELMA, Šárka PAVLOVÁ, Václav HEJRET, Petr TAUŠ, Jakub HYNŠT, Karla PLEVOVÁ, Jana KOTAŠKOVÁ, Jitka MALČÍKOVÁ and Šárka POSPÍŠILOVÁ. Distinct p53 phosphorylation patterns in chronic lymphocytic leukemia patients are reflected in circumjacent pathways activation upon DNA damage. In Mendel genetics Conference 2022. 2022.

PEŠOVÁ, Michaela, Veronika MANČÍKOVÁ, Robert HELMA, Šárka PAVLOVÁ, Václav HEJRET, Petr TAUŠ, Jakub HYNŠT, Karla PLEVOVÁ, Jana KOTAŠKOVÁ, Jitka MALČÍKOVÁ and Šárka POSPÍŠILOVÁ. Distinct p53 phosphorylation patterns in chronic lymphocytic leukemia patients are reflected in circumjacent pathways activation upon DNA damage. In EHA 2022 in HemaSphere 2022; 6(S3): 976. 2022.

PEŠOVÁ, Michaela, Veronika MANČÍKOVÁ, Robert HELMA, Šárka PAVLOVÁ, Václav HEJRET, Petr TAUŠ, Jakub HYNŠT, Karla PLEVOVÁ, Jana KOTAŠKOVÁ, Jitka MALČÍKOVÁ and Šárka POSPÍŠILOVÁ. Distinct p53 phospohrylation patterns in chronic lymphocytic leukemia patients are reflected in circumjacent pathways activation upon DNA damage. In PhD retreat 2022, Telč. 2022.

CHALUPOVÁ, Eliška, Ondřej VACULÍK, Jakub POLÁČEK, Filip JOZEFOV, Tomáš MAJTNER and Panagiotis ALEXIOU. ENNGene: an Easy Neural Network model building tool for Genomics. BMC Genomics. BioMed Central, 2022, vol. 23, No 1, p. 248-258. ISSN 1471-2164. Available from: https://dx.doi.org/10.1186/s12864-022-08414-x.

VALISKOVA, Barbora, Sona GREGOROVA, Diana LUSTYK, Petr ŠIMEČEK, Petr JANSA and Jiri FOREJT. Genic and chromosomal components of Prdm9-driven hybrid male sterility in mice (Mus musculus). Genetics. BETHESDA (USA): GENETICS SOCIETY AMERICA, 2022, vol. 222, No 1, p. 1-14. ISSN 0016-6731. Available from: https://dx.doi.org/10.1093/genetics/iyac116.

GREŠOVÁ, Katarína, Petr ŠIMEČEK, Vlastimil MARTINEK, David ČECHÁK and Panagiotis ALEXIOU. Genomic Benchmarks: A Collection of Datasets for Genomic Sequence Classification. 2022. ISBN 978-80-7592-127-7.

CAVALLIN, Ivana, Marek BARTOŠOVIČ, Tomáš SKALICKÝ, Praveenkumar RENGARAJ, Martin DEMKO, Martina Christina SCHMIDT-DENGLER, Aleksej DRINO, Mark HELM and Štěpánka VAŇÁČOVÁ. HITS-CLIP analysis of human ALKBH8 reveals interactions with fully processed substrate tRNAs and with specific noncoding RNAs. RNA. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 2022, vol. 28, No 12, p. 1568-1581. ISSN 1355-8382. Available from: https://dx.doi.org/10.1261/rna.079421.122.

LIMBERGER, Tanja, Michaela SCHLEDERER, Karolína TRACHTOVÁ, Ines Garces de los Fayos ALONSO, Jiaye YANG, Sandra HOEGLER, Christina STERNBERG, Vojtěch BYSTRÝ, Jan OPPELT, Boris TICHÝ, Margit SCHMEIDL, Petra KODAJOVA, Anton JAEGER, Heidi A NEUBAUER, Monika OBERHUBER, Belinda S SCHMALZBAUER, Šárka POSPÍŠILOVÁ, Helmut DOLZNIG, Wolfgang WADSAK, Zoran CULIG, Suzanne Dawn TURNER, Gerda EGGER, Sabine LAGGER and Lukas KENNER. KMT2C methyltransferase domain regulated INK4A expression suppresses prostate cancer metastasis. Molecular Cancer. LONDON: BioMed Central, 2022, vol. 21, No 1, p. 89-107. ISSN 1476-4598. Available from: https://dx.doi.org/10.1186/s12943-022-01542-8.

KLIMENTOVÁ, Eva, Václav HEJRET, Katarína GREŠOVÁ, Ilektra-Chara GIASSA and Panagiotis ALEXIOU. miRBind: a Deep Learning method for miRNA binding classification. 2022. ISBN 978-80-7592-127-7.

KLIMENTOVÁ, Eva, Václav HEJRET, Ján KRČMÁŘ, Katarína GREŠOVÁ, Ilektra-Chara GIASSA and Panagiotis ALEXIOU. miRBind: A Deep Learning Method for miRNA Binding Classification. GENES. MDPI, 2022, vol. 13, No 12, p. 2323-2335. ISSN 2073-4425. Available from: https://dx.doi.org/10.3390/genes13122323.

HEJRET, Václav, Nandan Mysore VARADARAJAN, Eva KLIMENTOVÁ, Ilektra-Chara GIASSA, Štěpánka VAŇÁČOVÁ and Panagiotis ALEXIOU. Noncanonical small RNA chimeras identified by AGO2-CLASH. In 16th Microsymposium on RNA Biology. 2022.

BHAGAT, Kriti, Ilektra-Chara GIASSA and Panagiotis ALEXIOU. PENGUINN-RNA: prediction of RNA G-quadruplexes using interpretable Neural Networks. 2022. ISBN 978-80-7592-127-7.

BYSTRÝ, Vojtěch, Viktor MAŠÍČEK, Nicolas MOKRIŠ and Martin DEMKO. SeqUIa: Softwarová platforma pro zpracování sekvenování nové generace skrze grafické rozhraní (SeqUIa: Software platform for GUI based next generation sequencing data analysis). 2022.

GREŠOVÁ, Katarína, Panagiotis ALEXIOU and Ilektra-Chara GIASSA. Small RNA Targets: Advances in Prediction Tools and High-Throughput Profiling. BIOLOGY-BASEL. BASEL: MDPI, 2022, vol. 11, No 12, p. 1798-1821. ISSN 2079-7737. Available from: https://dx.doi.org/10.3390/biology11121798.

MURESAN, Ximena M., Eva SLABÁKOVÁ, Jiřina PROCHÁZKOVÁ, Stanislav DRÁPELA, Radek FEDR, Markéta PÍCKOVÁ, Ondřej VACEK, Ráchel VÍCHOVÁ, Tereza SUCHÁNKOVÁ, Jan BOUCHAL, Daniela KÜRFÜRSTOVÁ, Milan KRÁL, Tereza HULÍNOVÁ, Radek P. SÝKORA, Vladimír ŠTUDENT, Václav HEJRET, Wytske M. VAN WEERDEN, Martin PUHR, Václav PUSTKA, David POTĚŠIL, Zbyněk ZDRÁHAL, Zoran CULIG and Karel SOUČEK. Toll-Like Receptor 3 Overexpression Induces Invasion of Prostate Cancer Cells, whereas Its Activation Triggers Apoptosis. American Journal of Pathology. Elsevier, 2022, vol. 192, No 9, p. 1321-1335. ISSN 0002-9440. Available from: https://dx.doi.org/10.1016/j.ajpath.2022.05.009.

MURESAN, Ximena M., Eva SLABÁKOVÁ, Jiřina PROCHÁZKOVÁ, Stanislav DRÁPELA, Radek FEDR, Markéta PÍCKOVÁ, Ondřej VACEK, Ráchel VÍCHOVÁ, Tereza SUCHÁNKOVÁ, Jan BOUCHAL, Daniela KÜRFÜRSTOVÁ, Milan KRÁL, Tereza HULÍNOVÁ, Radek P. SÝKORA, Vladimír ŠTUDENT, Václav HEJRET, Wytske M. VAN WEERDEN, Martin PUHR, Václav PUSTKA, David POTĚŠIL, Zbyněk ZDRÁHAL, Zoran CULIG and Karel SOUČEK. Toll-Like Receptor 3 Overexpression Induces Invasion of Prostate Cancer Cells, whereas Its Activation Triggers Apoptosis. American Journal of Pathology. Elsevier, 2022, vol. 192, No 9, p. 1321-1335. ISSN 0002-9440. Available from: https://dx.doi.org/10.1016/j.ajpath.2022.05.009.

DRÁBOVÁ, Klára, Petra POKORNÁ, Hana PÁLOVÁ, Soňa ADAMCOVÁ, Vojtěch BYSTRÝ, Robin JUGAS, Ondřej SLABÝ and Jaroslav ŠTĚRBA. Výsledky celoexomového sekvenování germinální DNA u dětských pacientů se solidními tumory. In XXV. Biologické dny. 2022.

JONES, W., B.S. GONG, N. NOVORADOVSKAYA, D. LI, R. KUSKO, T.A. RICHMOND, D.J. JOHANN, H. BISGIN, S.M.E. SAHRAEIAN, P.R. BUSHEL, M. PIROOZNIA, K. WILKINS, M. CHIERICI, W.J. BAO, L.S. BASEHORE, A.B. LUCAS, D. BURGESS, D.J. BUTLER, S. CAWLEY, C.J. CHANG, G.C. CHEN, T. CHEN, Y.C. CHEN, D.J. CRAIG, A. DEL POZO, J. FOOX, M. FRANCESCATTO, YT FU, C. FURLANELLO, K. GIORDA, K.P. GRIST, M.J. GUAN, Y.Y. HAO, S. HAPPE, G. HARIANI, N. HASELEY, J. JASPER, G. JURMAN, D.P. KREIL, P. LABAJ, K. LAI, J.Y. LI, Q.Z. LI, Y.L. LI, Z.G. LI, Z.C. LIU, M.S. LOPEZ, K. MICLAUS, R. MILLER, V.K. MITTAL, M. MOHIYUDDIN, C. PABON-PENA, B.L. PARSONS, F.J. QIU, A. SCHERER, T.L. SHI, S. STIEGELMEYER, C. SUO, Nikola TOM, D. WANG, Z.N. WEN, L.H. WU, W.Z. XIAO, C. XU, Y. YU, J.Y. ZHANG, Y.F. ZHANG, Z.H. ZHANG, Y.T. ZHENG, C.E. MASON, J.C. WILLEY, W.D. TONG, L.M. SHI and J. XU. A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency. GENOME BIOLOGY. LONDON: BIOMED CENTRAL LTD, 2021, vol. 22, No 1, p. 111-148. ISSN 1474-760X. Available from: https://dx.doi.org/10.1186/s13059-021-02316-z.

GIASSA, Ilektra-Chara and Panagiotis ALEXIOU. Bioinformatics and Machine Learning Approaches to Understand the Regulation of Mobile Genetic Elements. BIOLOGY-BASEL. BASEL: MDPI, 2021, vol. 10, No 9, p. 896-917. ISSN 2079-7737. Available from: https://dx.doi.org/10.3390/biology10090896.

ŠENOVSKÁ, Anna, Eva DROZDOVÁ, Ondřej VACULÍK, Filip PARDY, Kristýna BRZOBOHATÁ, Dana FIALOVÁ, Jaromír ŠMERDA and Petr KOS. Cost-effective straightforward method for captured whole mitogenome sequencing of ancient DNA. Forensic Science International. Clare (Ireland): Elsevier, 2021, vol. 319, February 2021, p. 1-7. ISSN 0379-0738. Available from: https://dx.doi.org/10.1016/j.forsciint.2020.110638.

GONG, B.S., D. LI, R. KUSKO, N. NOVORADOVSKAYA, Y.F. ZHANG, S.Z. WANG, C. PABON-PENA, Z.H. ZHANG, K. LAI, W.S. CAI, J.S. LOCOCO, E. LADER, T.A. RICHMOND, V.K. MITTAL, L.C. LIU, D.J. JOHANN, J.C. WILLEY, P.R. BUSHEL, Y. YU, C. XU, G.C. CHEN, D. BURGESS, S. CAWLEY, K. GIORDA, N. HASELEY, F.J. QIU, K. WILKINS, H. ARIB, C. ATTWOOLL, K. BABSON, L.L. BAO, W.J. BAO, A.B. LUCAS, H. BEST, A. BHANDARI, H. BISGIN, J. BLACKBURN, T.M. BLOMQUIST, L. BOARDMAN, B. BURGHER, D.J. BUTLER, C.J. CHANG, A. CHAUBEY, T. CHEN, M. CHIERICI, C.R. CHIN, D. CLOSE, J. CONROY, J.C. COLEMAN, D.J. CRAIG, E. CRAWFORD, A. DEL POZO, I.W. DEVESON, D. DUNCAN, A.K. ETEROVIC, X.H. FAN, J. FOOX, C. FURLANELLO, A. GHOSAL, S. GLENN, M.J. GUAN, C. HAAG, X.Y. HANG, S. HAPPE, B. HENNIGAN, J. HIPP, H.X. HONG, K. HORVATH, J.H. HU, L.Y. HUNG, M. JAROSZ, J. KERKHOF, B. KIPP, D.P. KREIL, P. LAPUNZINA, P. LI, Q.Z. LI, W.H. LI, Z.G. LI, Y. LIANG, S.Q. LIU, Z.C. LIU, C. MA, N. MARELLA, R. MARTIN-ARENAS, D.B. MEGHERBI, Q.C. MENG, P.A. MIECZKOWSKI, T. MORRISON, D. MUZNY, B.T. NING, B.L. PARSONS, C.P. PAWELETZ, M. PIROOZNIA, W.B. QU, A. RAYMOND, P. RINDLER, R. RINGLER, B. SADIKOVIC, A. SCHERER, E. SCHULZE, R. SEBRA, R. SHAKNOVICH, Q. SHI, T.L. SHI, J.C. SILLA-CASTRO, M. SMITH, M.S. LOPEZ, P. SONG, D. STETSON, M. STRAHL, A. STUART, J. SUPPLEE, P. SZANKASI, H.W. TAN, L.Y. TANG, Y.H. TAO, S. THAKKAR, D. THIERRY-MIEG, J. THIERRY-MIEG, V.J. THODIMA, D. THOMAS, Boris TICHÝ, Nikola TOM, E.V. GARCIA, S. VERMA, K. WALKER, C. WANG, J.W. WANG, Y.X. WANG, Z.N. WEN, V. WIRTA, L.H. WU, C.L. XIAO, W.Z. XIAO, S.B. XU, M. YANG, J.M. YING, S.H. YIP, G.L. ZHANG, S. ZHANG, M.R. ZHAO, Y.T. ZHENG, X.Y. ZHOU, C.E. MASON, T. MERCER, W.D. TONG, L.M. SHI, W. JONES and J.S. XU. Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions. GENOME BIOLOGY. LONDON: BIOMED CENTRAL LTD, 2021, vol. 22, No 1, p. 109-131. ISSN 1474-760X. Available from: https://dx.doi.org/10.1186/s13059-021-02315-0.

PERDIKOPANIS, N., Georgios GEORGAKILAS, D. GRIGORIADIS, V. PIERROS, I. KAVAKIOTIS, Panagiotis ALEXIOU and A. HATZIGEORGIOU. DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. Nucleic acids research. Oxford: Oxford University Press, 2021, vol. 49, D1, p. "D151"-"D159", 9 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkaa1060.

PEŠOVÁ, Michaela, Veronika MANČÍKOVÁ, Šárka PAVLOVÁ, Robert HELMA, Jitka MALČÍKOVÁ, Marcela ŽENATOVÁ, Václav HEJRET, Petr TAUŠ, Jana KOTAŠKOVÁ, Karla PLEVOVÁ, Michael DOUBEK, Jiří MAYER and Šárka POSPÍŠILOVÁ. Fosforylace proteinu p53: vliv na aktivitu dráhy p53 po poškození DNA u chronické lymfocytární leukémie. In II. Český hematologický a transfuziologický sjezd v Transfuze a Hematologie Dnes (2021). 2021.

DYKOVÁ, Iva, Jakub ŽÁK, Martin REICHARD, Kamila SOUČKOVÁ, Ondřej SLABÝ, Vojtěch BYSTRÝ and Radim BLAŽEK. Histopathology of laboratory-reared Nothobranchius fishes: Mycobacterial infections versus neoplastic lesions. Journal of Fish Diseases. Hoboken: Wiley, 2021, vol. 44, No 8, p. 1179-1190. ISSN 0140-7775. Available from: https://dx.doi.org/10.1111/jfd.13378.

PEŠOVÁ, Michaela, Veronika MANČÍKOVÁ, Šárka PAVLOVÁ, Robert HELMA, Jitka MALČÍKOVÁ, Marcela ŽENATOVÁ, Václav HEJRET, Petr TAUŠ, Jana KOTAŠKOVÁ, Karla PLEVOVÁ, Michael DOUBEK, Jiří MAYER and Šárka POSPÍŠILOVÁ. Phosphorylation patterns of tumor suppressor P53 and their impact on the P53 pathway activity in chronic lymphocytic leukemia. In XIX International Workshop on Chronic Lymphocytic Leukemia (iwCLL). 2021.

LOBELLO, Cosimo, Boris TICHÝ, Vojtěch BYSTRÝ, Lenka RADOVÁ, Daniel FILIP, Marek MRÁZ, I.A. MONTES-MOJARRO, N. PROKOPH, H. LAROSE, H.C. LIANG, G.G. SHARMA, L. MOLOGNI, D. BELADA, K. KAMARADOVA, F. FEND, C. GAMBACORTI-PASSERINI, O. MERKEL, Suzanne Dawn TURNER, Andrea JANÍKOVÁ and Šárka POSPÍŠILOVÁ. STAT3 and TP53 mutations associate with poor prognosis in anaplastic large cell lymphoma. Leukemia. London: Nature Publishing Group, 2021, vol. 35, No 5, p. 1500-1505. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/s41375-020-01093-1.

LYČKA, Martin, Vratislav PEŠKA, Martin DEMKO, Ioannis SPYROGLOU, Agata Magdalena KILAR, Jiří FAJKUS and Miloslava FOJTOVÁ. WALTER: an easy way to online evaluate telomere lengths from terminal restriction fragment analysis. BMC Bioinformatics. London: BioMed Central, 2021, vol. 22, No 1, p. "145", 14 pp. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-021-04064-0.

LOBELLO, Cosimo, Boris TICHÝ, Vojtěch BYSTRÝ, Lenka RADOVÁ, Daniel FILIP, Marek MRÁZ, IA. MONTES-MOJARO, Andrea JANÍKOVÁ and Šárka POSPÍŠILOVÁ. Analysis mutational landscape in systemic anaplastic large cell lymphoma identifies novel prognostic markers. In 20. Pražské hematologické dny (Hematologie 2020), Praha. 2020.

ŠTĚTKOVÁ, Monika, Kateřina GROWKOVÁ, Petr FOJTÍK, Barbora VALČÍKOVÁ, Veronika PALUŠOVÁ, Amandine VERLANDE, Radek JORDA, Vladimír KRYŠTOF, Václav HEJRET, Panagiotis ALEXIOU, Vladimír ROTREKL and Stjepan ULDRIJAN. CDK9 activity is critical for maintaining MDM4 overexpression in tumor cells. CELL DEATH & DISEASE. LONDON: NATURE PUBLISHING GROUP, 2020, vol. 11, No 9, p. 1-14. ISSN 2041-4889. Available from: https://dx.doi.org/10.1038/s41419-020-02971-3.

PESCHELOVÁ, Helena, Veronika KOZLOVÁ, Veronika MANČÍKOVÁ, Adriana LADUNGOVÁ, Václav HEJRET and Michal ŠMÍDA. CRISPR/CAS9 technology: a useful tool in the study of chronic lymphocytic leukemia. In XXth Interdisciplinary meeting of young researchs and students in the field of chemistry, biochemistry, molecular biology and biomaterials in Chemické listy. 2020. ISSN 2336-7202.

PESCHELOVÁ, Helena, Lenka DOSTÁLOVÁ, Veronika KOZLOVÁ, Aneta LEDEREROVÁ, Václav HEJRET and Michal ŠMÍDA. Genome-wide CRISPR/Cas9 screening reveals novel target genes, whose inactivation is able to upregulate surface expression of immunotherapy target CD20. In 25th Congress of European Hematology Association, Amsterdam, Nizozemsko, in HemaSphere. 2020.

REIGL, Tomáš, Jakub Paweł PORC, Kamila STRÁNSKÁ, Karol PÁL, Veronika NAVRKALOVÁ, Jakub HYNŠT, Vojtěch BYSTRÝ, Šárka POSPÍŠILOVÁ, Nikos DARZENTAS and Karla PLEVOVÁ. High throughput sequencing data analysis of IG/TR rearranged genes in leukemie clinical research. In CEITEC PhD Conference, Brno, únor 2020. 2020.

KEENAN, B.T., R.J. GALANTE, J. LIAN, Petr ŠIMEČEK, D.M. GATTI, L. ZHANG, D.C. LIM, K.L. SVENSON, G.A. CHURCHILL and A.I. PACK. High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains. SLEEP. CARY: OXFORD UNIV PRESS INC, 2020, vol. 43, No 5, p. nestrankovano, 17 pp. ISSN 0161-8105. Available from: https://dx.doi.org/10.1093/sleep/zsz278.

GEORGAKILAS, Georgios, Andrea GRIONI, Konstantinos G. LIAKOS, Eliška CHALUPOVÁ, Fotis C. PLESSAS and Panagiotis ALEXIOU. Multi-branch Convolutional Neural Network for Identification of Small Non-coding RNA genomic loci. Scientific reports. London: Nature Research, 2020, vol. 10, No 1, p. 1-10. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-020-66454-3.

LOBELLO, Cosimo, Vojtěch BYSTRÝ, Lenka RADOVÁ, Daniel FILIP, Marek MRÁZ, IA. MONTES-MOJARRO, N. PROKOPH, H. LAROSE, HCh. LIANG, G. SHARMA, L. MOLOGNI, D. BELADA, K. KAMARÁDOVÁ, F. FEND, C. GAMBACORTI-PASSERINI, O. MERKEL, S. TURNER, Andrea JANÍKOVÁ and Šárka POSPÍŠILOVÁ. Mutational landscape analysis in systematic anaplastic large cell lymphoma identifies novel prognostic markers. In CEITEC PhD Conference, Brno, 2020. 2020.

KLIMENTOVÁ, Eva, Jakub POLÁČEK, Petr ŠIMEČEK and Panagiotis ALEXIOU. PENGUINN: Precise Exploration of Nuclear G-Quadruplexes Using Interpretable Neural Networks. Frontiers in Genetics. Lausanne: Frontiers, 2020, vol. 11, OCT, p. 568546-568552. ISSN 1664-8021. Available from: https://dx.doi.org/10.3389/fgene.2020.568546.

GEORGAKILAS, Georgios, N. PERDIKOPANIS and A. HATZIGEORGIOU. Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data. Nature Scientific Reports. London: NATURE RESEARCH, 2020, vol. 10, No 1, p. 877-888. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-020-57811-3.

PESCHELOVÁ, Helena, Veronika KOZLOVÁ, Veronika MANČÍKOVÁ, Adriana LADUNGOVÁ, Václav HEJRET and Michal ŠMÍDA. The use of CRISPR/Cas9 technology in the study of chronic lymphocytic leukemia. In CEITEC PhD Conference. 2020.

GRIONI, Andrea, G. FAZIO, S. RIGAMONTI, Vojtěch BYSTRÝ, G. DANIELE, Zuzana DOSTÁLOVÁ, M. QUADRI, C. SAITTA, D. SILVESTRI, S. SONGIA, C.T. STORLAZZI, A. BIONDI, Nikos DARZENTAS and G. CAZZANIGA. A Simple RNA Target Capture NGS Strategy for Fusion Genes Assessment in the Diagnostics of Pediatric B-cell Acute Lymphoblastic Leukemia. HEMASPHERE. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS, 2019, vol. 3, No 3, p. 1-9. ISSN 2572-9241. Available from: https://dx.doi.org/10.1097/HS9.0000000000000250.

ZÁPRAŽNÁ, Kristína, Kamila RÉBLOVÁ, V. SVOBODOVA, Lenka RADOVÁ, Vojtěch BYSTRÝ, Jiří BALOUN, Kristina ĎURECHOVÁ, Nikola TOM, Tomáš LOJA, Martina BUREŠOVÁ, Kamila STRÁNSKÁ, Alexandra OLTOVÁ, Michael DOUBEK, M.L. ATCHISON, Martin TRBUŠEK, Jitka MALČÍKOVÁ and Šárka POSPÍŠILOVÁ. Activation-induced deaminase and its splice variants associate with trisomy 12 in chronic lymphocytic leukemia. Annals of hematology. New York: Springer Verlag, 2019, vol. 98, No 2, p. 423-435. ISSN 0939-5555. Available from: https://dx.doi.org/10.1007/s00277-018-3520-5.

HYNŠT, Jakub, Karla PLEVOVÁ, Lenka RADOVÁ, Vojtěch BYSTRÝ, Karol PÁL and Šárka POSPÍŠILOVÁ. Bioinformatic pipelines for whole transcriptome sequencing data exploitation in leukemia patients with complex structural variants. PeerJ. London: PEERJ INC, 2019, vol. 7, JUN, p. 7071-7086. ISSN 2167-8359. Available from: https://dx.doi.org/10.7717/peerj.7071.

PESCHELOVÁ, Helena, Veronika KOZLOVÁ, Václav HEJRET and Michal ŠMÍDA. CRISPR/Cas9 gene editing and functional screening in chronic lymphocytic leukemia. In Joint retreat 2019, Kouty u Ledče nad Sázavou. 2019. ISBN 978-80-210-9300-3.

GRIONI, Andrea, Georgios GEORGAKILAS and Panagiotis ALEXIOU. Dicier: a Fine-tuned Bioinformatics Pipeline to Detect Micro-RNA Chimeric Reads. In ASCB / EMBO 2019 meeting. 2019.

REIGL, Tomáš, Kamila STRÁNSKÁ, Vojtěch BYSTRÝ, Adam KREJČÍ, Andrea GRIONI, Šárka POSPÍŠILOVÁ, Nikos DARZENTAS and Karla PLEVOVÁ. Encyklopedie subsetů CLL – Unikátní bio informatický nástroj a databáze pro analýzu subsetů stereotypních B buněčných receptorů u CLL (Encyclopedia of CLL subsets - a unique bioinformatics tool and database for analysis of subsets of stereotypical B-Cell receptors in CLL). In Klinická Onkologie. ČR: ČLS JEP, 2019, p. 167-170. ISSN 0862-495X.

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