Publication Records

KADEŘÁVEK, Pavel and Radovan FIALA. C-13 Relaxation Studies of RNA Dynamics: Challenges and Solutions. In XXIII International Conference on Magnetic Resonance in Biological Systems. San Diego: ICMRBS, 2008, p. 117.

KADEŘÁVEK, Pavel and Radovan FIALA. C-13 Relaxation Study of RNA Dynamics: Application to UUCG Hairpin Loop. In 23rd NMR Valtice. 1st ed. Brno: Masarykova Univerzita, 2008, p. 31-31. ISBN 978-80-86441-39-9.

TRANTÍREK, Lukáš, Vladimír SKLENÁŘ and Radovan FIALA. Effect of Counter Ions on Cross-Correlated Relaxation Rates in Nucleic Acids. In XXIII International Conference on Magnetic Resonance in Biological Systems. San Diego: ICMRBS, 2008, p. 117.

BÁRTOVÁ, Iveta, Jaroslav KOČA and Michal OTYEPKA. Functional Flexibility of Human Cyclin-Dependent Kinase-2 and Its Evolutionarily Conservation. Protein Science. COLD SPRING HARBOR LAB PRESS, 2008, vol. 17, No 1, p. 22-33. ISSN 0961-8368.

PALEČEK, Emil, Veronika OSTATNÁ, Michal MASAŘÍK, Carlos BERTONCINI and Thomas JOVIN. Changes in interfacial properties of alpha-synuclein preceding its aggregation. Analyst. Cambridge: The Royal Society of Chemistry, 2008, vol. 133, No 1, p. 76-84. ISSN 0003-2654. Available from: https://dx.doi.org/10.1039/b712812f.

FAIMON, Jiří and Martin BLECHA. Interaction of Freshly Precipitated Silica Gel with Aqueous Silicic Acid Solutions under Ambient and Near Neutral pH-conditions: A Detailed Analysis of Linear Rate Law. Aquatic Geochemistry. Netherlands: Springer Netherlands, 2008, vol. 14, No 1, p. 1-40. ISSN 1380-6165.

MACEK, Pavel, Petr NOVÁK, Hana KŘÍŽOVÁ, Lukáš ŽÍDEK and Vladimír SKLENÁŘ. Dynamics of protein-ligand interactions: Insight by NMR and MD simulations. In Advances and Managment of NMR in Life Sciences. Florencie: CERM, Florence University, 2007, p. 25-25.

FIALA, Radovan and Pavel KADEŘÁVEK. Effect of asymmetric shielding tensor on model-free parameters of C-13 nuclei in nucleic acid bases. In Advances and management of NMR in life sciencess. 1st ed. Florence: University of Florence, 2007, p. 45-45.

KADEŘÁVEK, Pavel and Radovan FIALA. Limits of Accuracy of RNA Dynamics Studied by Model Free Analysis of C-13 Relaxation. In 22nd NMR Valtice. 1st ed. Brno: Masarykova Univerzita, 2007, p. 2-2. ISBN 978-80-86441-38-2.

TRANTÍREK, Lukáš, Erik CAHA, Pavel KADEŘÁVEK and Radovan FIALA. NMR 13C-relaxation Study of Base and Sugar Dynamics in GCAA RNA Hairpin Tetraloop. Journal of Biomolecular Structure and Dynamics. GUILDERLAND: Adenine Press, 2007, vol. 25, No 3, p. 307-326, 19 pp. ISSN 0739-1102.

NOVÁČEK, Vít, Loredana LAERA and Siegfried HANDSCHUH. Semi-automatic Integration of Learned Ontologies into a Collaborative Framework. In Proceedings of IWOD/ESWC 2007. Innsbruck: Springer Verlag, 2007, p. 13-26.

SKLENÁŘ, Vladimír. Dynamics of Protein-Ligand Interactions. In Frontieres of Biomolecular NMR. Lubjlana: Narodna i univerzitetna knjižnica, Ljubljana, 2006, p. 41-41. ISBN 961-6104-08-X.

NAVRÁTILOVÁ, Petra, Michal ČERNÍK, Hana KUČEROVÁ and Radovan PŘIKRYL. Dynamika kognitivní dysfunkce při léčbě antidepresivy (Dynamics of cognitive dysfunction in antidepression treatment). Psychiatrie. Praha: Tigis, 2006, vol. 10, suppl. 1, p. 17-17. ISSN 1211-7579.

FIALA, Radovan and Pavel KADEŘÁVEK. Evaluation of error in model-free parameters caused by asymmetric shielding tensor of base carbons in nucleic acids. In XXII International Conference on MagneticResonance in Biological Systems-Abstracts. 1st ed. Gottingen: ICMRBS, 2006, p. 336-337.

SKLENÁŘ, Vladimír. Dynamics of Protein-Pheromone Interactions:Temperature Dependent Spectral Density Mapping and Molecular Dynamics Simulations. In Magnetic Resonance in Physics, Chemistry, Biology, and Medicine. Berlín, SRN: Max-Planck-Institut für Polymerforschung, 2005, p. 14.

FAIMON, Jiří. Total dynamics of quartz-water system at ambient conditions. Aquatic Geochemistry. Netherlands: Springer Netherlands, 2005, vol. 2005, No 11, p. 139-172, 33 pp. ISSN 1380-6165.

FADRNÁ, Eva, Naděžda ŠPAČKOVÁ, Jaroslav KOČA, Thomas E. CHEATHAM III and Jiří ŠPONER. Guanine Quadruplex Loops Studied by Molecular Mechanics and Dynamics Tools: Advances and Force Fields Limitations. In Materials Structure in Chemistry, Biology, Physics and Technology. 2004th ed. Praha: 3. Setkání strukturních biologů, 2004, p. 44.

FADRNÁ, Eva, Naděžda ŠPAČKOVÁ, Jaroslav KOČA and Jiří ŠPONER. Struktura a interakce nukleových kyselin pohledem molekulové dynamiky (Structure and dynamics of nucleic acids in a framework of molecular dynamics). In sborník konference. 2004th ed. Pardubice: XXVII. Konference organických chemiků, 2004, p. 07-9. ISBN 80-7194-671-0.

FADRNÁ, Eva, Naděžda ŠPAČKOVÁ, Jiří ŠPONER and Jaroslav KOČA. Conformational Flexibility of DNA sequences studied by Advanced Molecular Mechanics and Dynamics Tools. In Book of Abstracts. 2003rd ed. Praha: Workshop on Modeling Interactions in Biomolecules, 2003, p. 20.

FAIMON, Jiří. Formation of Colloidal Silica and Alumina During Experimental Granodiorite Weathering. Aquatic Geochemistry. Dordrecht, The Netherlands: Kluwer Academic Publishers, 2003, vol. 9, No 4, p. 305-341. ISSN 1380-616.

TRANTÍREK, Lukáš, Erik CAHA and Radovan FIALA. NMR Relaxation Studies of Fast Internal Motions in Nucleic Acids. In Materials Structure. 1st ed. Prague: Czech and Slovak Crystalographic Association, 2003, p. 40-41. ISBN 1211-5894.

FADRNÁ, Eva. Computer modelling and simulations of nucleic acids at National Centre for Biomolecular Research (NCBR). In Materials Structure in Chemistry, Biology, Physics and Technology. 2002nd ed. Praha: 1. Setkání strukturních biologů, 2002, p. 36.

FADRNÁ, Eva, Naděžda ŠPAČKOVÁ, Jiří ŠPONER and Jaroslav KOČA. Computer modelling of DNA quadruplex conformational behavior. In Chemické Listy. 2002nd ed. Praha: 54. Sjezd chemických společností, 2002, p. 425-426.

FADRNÁ, Eva, Naděžda ŠPAČKOVÁ, Jiří ŠPONER and Jaroslav KOČA. DNA quadruplexes with lateral loops - molecular modelling study of conformational behavior. In Chemometrics VI. 2002nd ed. Brno: Chemometrics VI, 2002, p. O17, 1 pp. ISBN 80-210-2918-8.

FADRNÁ, Eva, Naděžda ŠPAČKOVÁ, Jiří ŠPONER and Jaroslav KOČA. Molecular modelling of DNA fragment conformational behavior. In WATOC 02. 2002nd ed. Lugano, Švýcarsko: WATOC'02, 2002, p. PC438, 1 pp.

FIALA, Radovan and Vladimír SKLENÁŘ. NMR of Nucleic Acids. In ZERBE, Oliver. BioNMR in Drug Research. 1st ed. Weinheim: Wiley-VCH, 2002, p. 121-145. Methods and Principles in Medicinal Chemistry. ISBN 3-527-30465-7.

GLOSER, Vít. Seasonal changes of nitrogen storage compounds in a rhizomatous grass Calamagrostis epigeios. Biologia Plantarum. DORDRECHT: KLUWER ACADEMIC PUBL, 2002, vol. 45, No 4, p. 563-568. ISSN 0006-3134.

ŽÍDEK, Lukáš, Milos NOVOTNY and Martin J STONE. Increased protein backbone conformational entropy upon hydrophobic ligand binding. Nature Structural Biology. New York: Nature America Inc., 1999, vol. 6, No 12, p. 1118-1121. ISSN 1072-8368.

ONDRÁČEK, Pavel and Josef ZEMAN. The dynamics of matter exchange in Nové Mlýny basins (South Moravia). Brno: Masaryk University, 1998, 249 pp. ENVIWEATH 96. Proceedings of an International Conf. ISBN 80-210-1906-9.