Publication Records

ŠPAČKOVÁ, Anna, Ondřej VÁVRA, Tomáš RAČEK, Václav BAZGIER, David SEHNAL, Jiří DAMBORSKÝ, Radka SVOBODOVÁ, David BEDNÁŘ and Karel BERKA. ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era. Nucleic Acids Research. Oxford University Press, 2024, vol. 52, D1, p. "D413"-"D418", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad1012.

APPASAMY, Sri Devan, John BERRISFORD, Romana GÁBOROVÁ, Sreenath NAIR, Stephen ANYANGO, Sergei GRUDININ, Mandar DESHPANDE, David ARMSTRONG, Ivanna PIDRUCHNA, Joseph I. J. ELLAWAY, Grisell Díaz LEINES, Deepti GUPTA, Deborah HARRUS, Mihaly VARADI and Sameer VELANKAR. Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data. Scientific Data. Nature Portfolio, 2023, vol. 10, No 1, p. 1-13. ISSN 2052-4463. Available from: https://dx.doi.org/10.1038/s41597-023-02778-9.

SCHINDLER, Ondřej, Karel BERKA, Alessio CANTARA, Aleš KŘENEK, Dominik TICHÝ, Tomáš RAČEK and Radka SVOBODOVÁ. αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Research. Oxford: Oxford University Press, 2023, vol. 51, W1, p. "W11"-"W16", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad349.

CHARESHNEU, Aliaksei, Adam MIDLIK, Crina-Maria IONESCU, Alexander ROSE, Vladimír HORSKÝ, Alessio CANTARA, Radka SVOBODOVÁ, Karel BERKA and David SEHNAL. Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations. Nucleic Acids Research. Oxford University Press, 2023, vol. 51, W1, p. "W326"-"W330", 5 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad411.

VARADI, Mihaly, Stephen ANYANGO, Sri Devan APPASAMY, David ARMSTRONG, Marcus BAGE, John BERRISFORD, Preeti CHOUDHARY, Damian BERTONI, Mandar DESHPANDE, Grisell Diaz LEINES, Joseph ELLAWAY, Genevieve EVANS, Romana GABOROVA, Deepti GUPTA, Aleksandras GUTMANAS, Deborah HARRUS, Gerard J KLEYWEGT, Weslley Morellato BUENO, Nurul NADZIRIN, Sreenath NAIR, Lukas PRAVDA, Marcelo Querino Lima AFONSO, David SEHNAL, Ahsan TANWEER, James TOLCHARD, Charlotte ABRAMS, Roisin DUNLOP and Sameer VELANKAR. PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education. Protein Science. HOBOKEN: WILEY, 2022, vol. 31, No 10, 10 pp. ISSN 0961-8368. Available from: https://dx.doi.org/10.1002/pro.4439.