Publication Records

2001

1. Molecular dynamics of DNA quadruplex molecules containing inosine, 6-thioguanine and 6-thiopurine

   ŠTEFL, Richard, Naděžda ŠPAČKOVÁ, Imre BERGER, Jaroslav KOČA and Jiří ŠPONER. Molecular dynamics of DNA quadruplex molecules containing inosine, 6-thioguanine and 6-thiopurine. Biophysical Journal. Bethesda, USA: Biophysical Society, 2001, vol. 80, No 1, p. 455-468. ISSN 0006-3495.

   RIV/00216224:14310/01:00005556 Article in a journal. Biophysics. English. United States of America.
   Štefl, Richard (203 Czech Republic) -- Špačková, Naděžda (203 Czech Republic) -- Koča, Jaroslav (203 Czech Republic) -- Šponer, Jiří (203 Czech Republic, guarantor)
   Keywords in English: STRANDED GUANINE TETRAPLEX; OXYTRICHA TELOMERIC DNA; MESH EWALD METHOD; G-C REPEATS; CRYSTAL-STRUCTURE; FORCE-FIELD; BASE-PAIRS; AB-INITIO; G-QUARTET; STABLE TRAJECTORIES
   Changed by: prof. Mgr. Richard Štefl, Ph.D., učo 19362. Changed: 26/1/2007 17:16.

   More: https://is.muni.cz/publication/399772/en
2. Solution structure of the dodecamer d-(CATGGGCC-CATG)(2) is B-DNA. Experimental and molecular dynamics study

   DORNBERGER, Utz, Naděžda ŠPAČKOVÁ, Axel WALTER, Friedrich A. GOLLMICK, Jiří ŠPONER and hartmut FRITZSCHE. Solution structure of the dodecamer d-(CATGGGCC-CATG)(2) is B-DNA. Experimental and molecular dynamics study. Journal of Biomolecular Structure and Dynamics. GUILDERLAND: Adenine Press, 2001, vol. 19, No 1, p. 159-174. ISSN 0739-1102.

   RIV/00216224:14310/01:00005557 Article in a journal. Biophysics. English. United States of America.
   Keywords in English: PARTICLE MESH EWALD; NUCLEIC-ACIDS; AB-INITIO; CONFORMATIONAL-ANALYSIS; COUPLING-CONSTANTS; AQUEOUS-SOLUTION; FORCE-FIELD; NMR; BASE; DUPLEX
   Changed by: Mgr. Naděžda Špačková, Ph.D., učo 18512. Changed: 13/3/2002 13:41.

   More: https://is.muni.cz/publication/399773/en
3. Structural dynamics and cation interactions of DNA quadruplex molecules containing mixed guanine/cytosine quartets revealed by large-scale MD simulations

   ŠPAČKOVÁ, Naděžda, Imre BERGER and Jiří ŠPONER. Structural dynamics and cation interactions of DNA quadruplex molecules containing mixed guanine/cytosine quartets revealed by large-scale MD simulations. Journal of the American Chemical Society. Washington, D.C.: American Chemical Society, 2001, vol. 123, No 14, p. 3295-3307. ISSN 0002-7863.

   RIV/00216224:14310/01:00005554 Article in a journal. Biophysics. English. United States of America.
   Keywords in English: PARTICLE-MESH-EWALD; STRANDED GUANINE TETRAPLEX; OXYTRICHA TELOMERIC DNA; BONDED G-TETRAD; CRYSTAL-STRUCTURE; NUCLEIC-ACIDS; FORCE-FIELD; ANGSTROM RESOLUTION; MINOR-GROOVE; SODIUM-IONS
   Changed by: Mgr. Naděžda Špačková, Ph.D., učo 18512. Changed: 13/3/2002 12:57.

   More: https://is.muni.cz/publication/399752/en