Algorithms searching for discontinuos motifs on the surface of protein molecules

sad

a_nin.c
a_sas.c
a_ucsf.c
amino.c
lzs.c
main.h
radii.c
readPDB.c
sad.c
Makefile

samie

a_nin.c
a_sas.c
a_ucsf.c
amino.c
lzs.c
main.h
radii.c
readPDB.c
samie.c
motif.c
Makefile

sasa

PDB files

1AXC.pdb
1EDU.pdb
1FNA.pdb
1GWQ.pdb
1GWR.pdb
1H0A.pdb
1H25.pdb
1JSU.pdb
1T63.pdb
1TTG.pdb

sad
output

1AXC
1EDU
1FNA
1GWQ
1GWR
1H0A
1H25
1JSU
1T63
1TTG

samie
output

1AXC
1EDU
1FNA
1GWQ
1GWR
1H0A
1H25
1JSU
1T63
1TTG

sasa
output

sas1AXC.txt
sas1EDU.txt
sas1FNA.txt
sas1GWQ.txt
sas1GWR.txt
sas1H0A.txt
sas1H25.txt
sas1JSU.txt
sas1T63.txt
sas1TTG.txt

text of the thesis