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Curriculum vitae

Name, first names, scientific degrees
  • Kozlikova Barbora, Ph.D.
Department/Faculty/University
  • Department of Visual Computing, Faculty of Informatics, Masaryk University
Function, current position
  • Associate Professor
Education and academic qualifications
  • 12/2011 Doctorate in Computer Science, Masaryk University. Thesis topic: Visualization techniques for static and dynamic protein molecules and their channels.
  • 2004-2006 Diploma in Computer Science (M.Sc.), Masaryk University. Thesis topic: Interactive visualization of molecular models.
  • 2001-2004 Diploma in Computer Science (Bc.), Masaryk University. Thesis topic: Animation techniques.
Professional experience
  • since 09/2017, Associate professor at the Masaryk University.
  • 07/2012 - 08/2017, Assistant professor at the Masaryk University: Research, education, supervising bachelor and master students.
  • 01/2012 - 06/2012, Java programmer and analyst in Home Credit International: Design and development of enterprise applications.
Teaching activities
  • Visualization, Computer Graphics API, Computational Geometry Project, Laboratory of Human-Computer Interaction, Generative design programming.
Research activities
  • Research interest in molecular analysis and visualization, security visualization, visual analysis, computational geometry.
Internship and stays for the purpose of study or work
  • 2008-2009: five months research stay at the Hasso-Plattner Institut at the University of Potsdam
  • 2014-2015: six months research stay at the Institute of Computer Graphics and Algorithms, TU Wien
  • 2015, 201: four short-term research stays in the Visualization Group at the University of Bergen, Norway
  • 2017: one month research stay at the Institute of Computer Graphics and Algorithms, TU Wien
  • 2008/10/01 – 2009/03/31: University of Potsdam, Potsdam, DEU
Other academic activities, research projects, grants
  • Since 10/2016: member of the Academic Senate FI MU
    Ongoing projects:
  • Czech Science Foundation project Methods of Identication and Visualization of Tunnels for Flexible Ligands in Dynamic Proteins (GA17-07690S)
  • Ministry of the Interior of the Czech Republic project Complex analysis and Visualization of Heterogeneous Big Data (BV III/1-VS)
  • International DFG-GACR project Visual Analysis of Protein-Ligand Interactions (GC18-18647J)
Non-university activities
  • Short Papers Co-Chair at EuroVis 2017
  • Publicity Co-Chair at BioVis 2017
  • General Chair of EuroVis 2018
  • General Chair of VCBM 2019
  • Full Papers Co-Chair at VCBM 2019
  • VisNotes co-chair at PacificVis 2020
  • IPC member of IEEE SciVis, EuroVis, CGI, VCBM
Most significant professional accomplishments
  • 2016: Best paper award at BioVis 2016 conference
  • 2017: Honorable mention best paper award at IEEE VIS 2017 conference
  • 2018: Honorable mention best paper award at IEEE VIS 2018 conference
Major publications
  • KOCINCOVÁ, Lucia, Miroslava JAREŠOVÁ, Jan BYŠKA, Julius PARULEK, Helwig HAUSER and Barbora KOZLÍKOVÁ. Comparative Visualization of Protein Secondary Structures. BMC Bioinformatics, BioMed Central, 2017, vol. 18, No 23, p. 0-0. ISSN 1471-2105. doi:10.1186/s12859-016-1449-z. URL info
  • FURMANOVÁ, Katarína, Miroslava JAREŠOVÁ, Jan BYŠKA, Adam JURČÍK, Julius PARULEK, Helwig HAUSER and Barbora KOZLÍKOVÁ. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics, BioMed Central, 2017, vol. 18, No 22, p. 1-16. ISSN 1471-2105. doi:10.1186/s12859-016-1448-0. URL info
  • KOZLÍKOVÁ, Barbora, Michael KRONE, Martin FALK, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Ivan VIOLA, Julius PARULEK and Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art Revisited. Computer Graphics Forum, Wiley-Blackwell, 2017, vol. 36, No 8, p. 178-204. ISSN 0167-7055. doi:10.1111/cgf.13072. info
  • BYŠKA, Jan, Mathieu Le MUZIC, Eduard GRÖLLER, Ivan VIOLA and Barbora KOZLÍKOVÁ. AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics, IEEE, 2016, vol. 22, No 1, p. 747-756. ISSN 1077-2626. doi:10.1109/TVCG.2015.2467434. info
  • PAVELKA, Antonín, Eva ŠEBESTOVÁ, Barbora KOZLÍKOVÁ, Jan BREZOVSKÝ, Jiří SOCHOR and Jiří DAMBORSKÝ. CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules. IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE Computer Society, 2016, vol. 13, No 3, p. 505 - 517. ISSN 1545-5963. doi:10.1109/TCBB.2015.2459680. URL info
  • KRONE, Michael, Barbora KOZLÍKOVÁ, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Julius PARULEK, Hans-Christian HEGE and Ivan VIOLA. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum, The Eurographics Association and John Wiley & Sons Ltd., 2016, vol. 35, No 3, p. 527-551. ISSN 0167-7055. doi:10.1111/cgf.12928. info
  • BYŠKA, Jan, Adam JURČÍK, Eduard M. GRÖLLER, Ivan VIOLA and Barbora KOZLÍKOVÁ. MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Computer Graphics Forum, Wiley-Blackwell, 2015, vol. 34, No 3, p. 1-10. ISSN 0167-7055. doi:10.1111/cgf.12612. info
  • KOZLÍKOVÁ, Barbora, Eva ŠEBESTOVÁ, Vilém ŠUSTR, Jan BREZOVSKÝ, Ondřej STRNAD, Lukáš DANIEL, David BEDNÁŘ, Antonín PAVELKA, Martin MANAK, Martin BEZDĚKA, Petr BENEŠ, Matúš KOTRY, Artur Wiktor GORA, Jiří DAMBORSKÝ and Jiří SOCHOR. CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinformatics, Oxford University Press, 2014, vol. 30, No 18, p. 2684-2685. ISSN 1367-4803. doi:10.1093/bioinformatics/btu364. info
  • CHOVANCOVÁ, Eva, Antonín PAVELKA, Petr BENEŠ, Ondřej STRNAD, Jan BREZOVSKÝ, Barbora KOZLÍKOVÁ, Artur Wiktor GORA, Vilém ŠUSTR, Martin KLVAŇA, Petr MEDEK, Lada BIEDERMANNOVÁ, Jiří SOCHOR and Jiří DAMBORSKÝ. CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLoS Computational Biology, 2012, vol. 8, No 10, p. "nestránkováno". ISSN 1553-7358. doi:10.1371/journal.pcbi.1002708. URL info

2019/05/05


Curriculum vitae: doc. RNDr. Barbora Kozlíková, Ph.D. (učo 60850), version: English(1), last update: 2019/05/05 11:52, B. Kozlíková