PřF:C6770 NMR Spectr. of Biomolecules - Course Information
C6770 NMR Spectroscopy of BiomoleculesFaculty of Science
- Extent and Intensity
- 2/0/0. 2 credit(s) (fasci plus compl plus > 4). Recommended Type of Completion: zk (examination). Other types of completion: k (colloquium).
- prof. Mgr. Lukáš Žídek, Ph.D. (lecturer)
doc. RNDr. Radovan Fiala, CSc. (lecturer)
Konstantinos Tripsianes, Ph.D. (lecturer)
- prof. Mgr. Lukáš Žídek, Ph.D.
National Centre for Biomolecular Research - Faculty of Science
Contact Person: prof. Mgr. Lukáš Žídek, Ph.D.
Supplier department: National Centre for Biomolecular Research - Faculty of Science
- Tue 9:00–10:50 A4-211
- C5320 Theoretical Concepts of NMR
The course is offered to students interested in NMR methods applied to biomacromolecules. Basic knowledge of structure of proteins and nucleic acids is expected.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- Fields of study the course is directly associated with
- there are 9 fields of study the course is directly associated with, display
- Course objectives
- The course will provide introduction to modern NMR techniques which can be applied to extract structural information for small and mid-size biological macromolecules - peptides, proteins, DNA and RNA oligonucleotides. Experimental procedures and computational protocols for determination of three-dimensional structures and dynamics based on NMR data will be discussed. Students who finish the course successfully will understand principles of NMR and its applications to biochemical problems described in original research articles, to analyze NMR experiments and design their modification, to chose the correct approach of solving a given problem, and to combine results of individual approaches to obtain a complex picture of the studied problem. The course is designed so that students who continue to study in a PhD program will be able to apply the learned skills in their own research projects.
- 1. NMR as a tool for structure biology
- 2. Basic NMR experiments, spin alchemy in heteronuclear systems
- 3. NMR of proteins: basic ideas
- 4. NMR of proteins: technical issues
- 5. Homonuclear systems, equivalent nuclei, strong coupling
- 6. TOCSY
- 7. NMR of nucleic acids I (R. Fiala)
- 8. NMR of nucleic acids II (R. Fiala)
- 9. Practical application of protein NMR spectroscopy I (K. Tripsianes)
- 10. Practical application of protein NMR spectroscopy II (K. Tripsianes)
- 11. NMR relaxation and dynamics of molecules I
- 12. NMR relaxation and dynamics of molecules II
- 13. Interactions, exchange
- CAVANAGH, John. Protein NMR spectroscopy : principles and practice. 2nd ed. Amsterdam: Elsevier, 2007. xxv, 885. ISBN 9780121644918. info
- Teaching methods
- Lectures combining explanation of basic ideas with analysis of model examples, computer simulations of the discussed topics.
- Assessment methods
- Oral examination in a form of discussion of problems solved by the student.
- Language of instruction
- Follow-Up Courses
- Further Comments
- Study Materials
The course is taught annually.
- Teacher's information