A relativistic DFT methodology for calculating the structures
and NMR chemical shifts of octahedral platinum and iridium
complexes

J 2013

A relativistic DFT methodology for calculating the structures and NMR chemical shifts of octahedral platinum and iridium complexes

VÍCHA, Jan, Michael PATZSCHKE a Radek MAREK

Základní údaje

Originální název

A relativistic DFT methodology for calculating the structures and NMR chemical shifts of octahedral platinum and iridium complexes

Autoři

VÍCHA, Jan (203 Česká republika, domácí), Michael PATZSCHKE (246 Finsko) a Radek MAREK (203 Česká republika, garant, domácí)

Vydání

Physical Chemistry Chemical Physics, Cambridge, Royal Society of Chemistry, 2013, 1463-9076

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10403 Physical chemistry

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

DOI: 10.1039/C3CP44440F

Impakt faktor

Impact factor: 4.198

Kód RIV

RIV/00216224:14740/13:00066070

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.1039/C3CP44440F

UT WoS

000318306100040

Klíčová slova anglicky

Cluster calculations; PBE0; dispersion correction; exact-exchange admixture; spin-orbit coupling; magnetic shielding; tautomerism

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 10. 4. 2014 09:10, Olga Křížová

Anotace

V originále

A methodology for optimizing the geometry and calculating the NMR shielding constants is calibrated for octahedral complexes of Pt(IV) and Ir(III) with modified nucleic acid bases. The performance of seven different functionals (BLYP, B3LYP, BHLYP, BP86, TPSS, PBE, and PBE0) in optimizing the geometry of transition-metal complexes is evaluated using supramolecular clusters derived from X-ray data. The effects of the size of the basis set (ranging from SVP to QZVPP) and the dispersion correction (D3) on the interatomic distances are analyzed. When structural deviations and computational demands are employed as criteria for evaluating the optimizations of these clusters, the PBE0/def2-TZVPP/D3 approach provides excellent results. In the next step, the PBE0/def2-TZVPP approach is used with the continuum-like screening model (COSMO) to optimize the geometry of single molecules for the subsequent calculation of the NMR shielding constants in solution. The two-component zeroth-order regular approximation (SO-ZORA) is used to calculate the NMR shielding constants (PBE0/TZP/COSMO). The amount of exact exchange in the PBE0 functional is validated for the nuclear magnetic shieldings of atoms in the vicinity of heavy transition metals. For the PBE0/TZP/COSMO setup, an exact exchange of 40% is found to accurately reproduce the experimental NMR shielding constants for both types of complexes. Finally, the effect of the amount of exact exchange in the NMR shielding calculations (which is capable of compensating for the structural deficiencies) is analyzed for various molecular geometries (SCS-MP2, BHLYP, and PBE0) and the influence of a trans-substituent on the NMR chemical shift of nitrogen is discussed. The observed dependencies for iridium complex cannot be rationalized by visualizing the Fermi-contact (FC) induced spin density and probably originate from changes in the d-d transitions that modulate the spin-orbit (SO) part of the SO/FC term.

Návaznosti

GAP206/12/0539, projekt VaV

Název: Struktura a dynamika komplexů přechodných kovů a jejich interakce s kavitandy (Akronym: METALIN)

Investor: Grantová agentura ČR, Struktura a dynamika komplexů přechodných kovů a jejich interakce s kavitandy

Přiložené soubory

PCCP13_15_7740.pdf

Požádat o autorskou verzi souboru

Citovat

VÍCHA, Jan, Michael PATZSCHKE a Radek MAREK. A relativistic DFT methodology for calculating the structures and NMR chemical shifts of octahedral platinum and iridium complexes. Physical Chemistry Chemical Physics. Cambridge: Royal Society of Chemistry, 2013, roč. 15, č. 20, s. 7740-7754. ISSN 1463-9076. Dostupné z: https://dx.doi.org/10.1039/C3CP44440F.

@article{1093626,
   author = {Vícha, Jan and Patzschke, Michael and Marek, Radek},
   article_location = {Cambridge},
   article_number = {20},
   doi = {http://dx.doi.org/10.1039/C3CP44440F},
   keywords = {Cluster calculations; PBE0; dispersion correction; exact-exchange admixture; spin-orbit coupling; magnetic shielding; tautomerism},
   language = {eng},
   issn = {1463-9076},
   journal = {Physical Chemistry Chemical Physics},
   title = {A relativistic DFT methodology for calculating the structures and NMR chemical shifts of octahedral platinum and iridium complexes},
   url = {http://dx.doi.org/10.1039/C3CP44440F},
   volume = {15},
   year = {2013}
}

TY  - JOUR
ID  - 1093626
AU  - Vícha, Jan - Patzschke, Michael - Marek, Radek
PY  - 2013
TI  - A relativistic DFT methodology for calculating the structures and NMR chemical shifts of octahedral platinum and iridium complexes
JF  - Physical Chemistry Chemical Physics
VL  - 15
IS  - 20
SP  - 7740-7754
EP  - 7740-7754
PB  - Royal Society of Chemistry
SN  - 14639076
KW  - Cluster calculations
KW  - PBE0
KW  - dispersion correction
KW  - exact-exchange admixture
KW  - spin-orbit coupling
KW  - magnetic shielding
KW  - tautomerism
UR  - http://dx.doi.org/10.1039/C3CP44440F
L2  - http://dx.doi.org/10.1039/C3CP44440F
N2  - A methodology for optimizing the geometry and calculating the NMR shielding constants is calibrated for octahedral complexes of Pt(IV) and Ir(III) with modified nucleic acid bases. The performance of seven different functionals (BLYP, B3LYP, BHLYP, BP86, TPSS, PBE, and PBE0) in optimizing the geometry of transition-metal complexes is evaluated using supramolecular clusters derived from X-ray data. The effects of the size of the basis set (ranging from SVP to QZVPP) and the dispersion correction (D3) on the interatomic distances are analyzed. When structural deviations and computational demands are employed as criteria for evaluating the optimizations of these clusters, the PBE0/def2-TZVPP/D3 approach provides excellent results. In the next step, the PBE0/def2-TZVPP approach is used with the continuum-like screening model (COSMO) to optimize the geometry of single molecules for the subsequent calculation of the NMR shielding constants in solution. The two-component zeroth-order regular approximation (SO-ZORA) is used to calculate the NMR shielding constants (PBE0/TZP/COSMO). The amount of exact exchange in the PBE0 functional is validated for the nuclear magnetic shieldings of atoms in the vicinity of heavy transition metals. For the PBE0/TZP/COSMO setup, an exact exchange of 40% is found to accurately reproduce the experimental NMR shielding constants for both types of complexes. Finally, the effect of the amount of exact exchange in the NMR shielding calculations (which is capable of compensating for the structural deficiencies) is analyzed for various molecular geometries (SCS-MP2, BHLYP, and PBE0) and the influence of a trans-substituent on the NMR chemical shift of nitrogen is discussed. The observed dependencies for iridium complex cannot be rationalized by visualizing the Fermi-contact (FC) induced spin density and probably originate from changes in the d-d transitions that modulate the spin-orbit (SO) part of the SO/FC term.
ER  -

VÍCHA, Jan, Michael PATZSCHKE a Radek MAREK. A relativistic DFT methodology for calculating the structures and NMR chemical shifts of octahedral platinum and iridium complexes. \textit{Physical Chemistry Chemical Physics}. Cambridge: Royal Society of Chemistry, 2013, roč.~15, č.~20, s.~7740-7754. ISSN~1463-9076. Dostupné z: https://dx.doi.org/10.1039/C3CP44440F.

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