NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI
IMAGES USING THE NAVIER EQUATION

D 2014

NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION

SOROKIN, Dmitry, Marco TEKTONIDIS, Karl ROHR a Pavel MATULA

Základní údaje

Originální název

NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION

Autoři

SOROKIN, Dmitry (643 Rusko, garant, domácí), Marco TEKTONIDIS (276 Německo), Karl ROHR (276 Německo) a Pavel MATULA (203 Česká republika, domácí)

Vydání

Beijing, IEEE International Symposium on Biomedical Imaging: Nano to Macro, od s. 746-749, 4 s. 2014

Nakladatel

IEEE

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Forma vydání

elektronická verze "online"

Kód RIV

RIV/00216224:14330/14:00073449

Organizační jednotka

Fakulta informatiky

ISBN

978-1-4673-1959-1

DOI

http://dx.doi.org/10.1109/ISBI.2014.6867978

Klíčová slova anglicky

Biomedical image analysis; Image sequence analysis; Contour-based registration

Štítky

CBIA, cbia-web, firank_B

Změněno: 27. 2. 2018 06:44, RNDr. Pavel Šmerk, Ph.D.

Anotace

V originále

In live cell imaging it is essential to analyze the pure motion of subnuclear proteins without influence of the cell nucleus motion and deformation which is referred to as nucleus global motion. In this work, we propose a 2D contour-based image registration approach for compensation of the global motion of the nucleus. Compared to a previous contour-based approach, our approach employs an explicit rigid registration step to compensate the nucleus translation and rotation, it uses morphological contour matching for establishing more reliable correspondences between contours in consecutive frames, and utilizes the Navier equation for more realistically modeling the nucleus deformation. Our approach was successfully applied to real live cell microscopy image sequences and an experimental comparison with an existing contour-based registration method and an intensity-based registration method has been performed.

Návaznosti

CZ.1.07/2.3.00/30.0030, interní kód MU

Název: Rozvoj lidských zdrojů pro oblast buněčné biologie

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Rozvoj lidských zdrojů pro oblast buněčné biologie, 2.3 Lidské zdroje ve výzkumu a vývoji

GBP302/12/G157, projekt VaV

Název: Dynamika a organizace chromosomů během buněčného cyklu a při diferenciaci v normě a patologii

Investor: Grantová agentura ČR, Dynamika a organizace chromosomů během buněčného cyklu a při diferenciaci v normě a patologii

Citovat

SOROKIN, Dmitry, Marco TEKTONIDIS, Karl ROHR a Pavel MATULA. NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION. Online. In IEEE International Symposium on Biomedical Imaging: Nano to Macro. Beijing: IEEE, 2014, s. 746-749. ISBN 978-1-4673-1959-1. Dostupné z: https://dx.doi.org/10.1109/ISBI.2014.6867978.

@inproceedings{1139066,
   author = {Sorokin, Dmitry and Tektonidis, Marco and Rohr, Karl and Matula, Pavel},
   address = {Beijing},
   booktitle = {IEEE International Symposium on Biomedical Imaging: Nano to Macro},
   doi = {http://dx.doi.org/10.1109/ISBI.2014.6867978},
   keywords = {Biomedical image analysis; Image sequence analysis; Contour-based registration},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {Beijing},
   isbn = {978-1-4673-1959-1},
   pages = {746-749},
   publisher = {IEEE},
   title = {NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION},
   year = {2014}
}

TY  - JOUR
ID  - 1139066
AU  - Sorokin, Dmitry - Tektonidis, Marco - Rohr, Karl - Matula, Pavel
PY  - 2014
TI  - NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION
PB  - IEEE
CY  - Beijing
SN  - 9781467319591
KW  - Biomedical image analysis
KW  - Image sequence analysis
KW  - Contour-based registration
N2  - In live cell imaging it is essential to analyze the pure motion of subnuclear proteins without influence of the cell nucleus motion and deformation which is referred to as nucleus global motion. In this work, we propose a 2D contour-based image registration approach for compensation of the global motion of the nucleus. Compared to a previous contour-based approach, our approach employs an explicit rigid registration step to compensate the nucleus translation and rotation, it uses morphological contour matching for establishing more reliable correspondences between contours in consecutive frames, and utilizes the Navier equation for more realistically modeling the nucleus deformation. Our approach was successfully applied to real live cell microscopy image sequences and an experimental comparison with an existing contour-based registration method and an intensity-based registration method has been performed.
ER  -

SOROKIN, Dmitry, Marco TEKTONIDIS, Karl ROHR a Pavel MATULA. NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION. Online. In \textit{IEEE International Symposium on Biomedical Imaging: Nano to Macro}. Beijing: IEEE, 2014, s.~746-749. ISBN~978-1-4673-1959-1. Dostupné z: https://dx.doi.org/10.1109/ISBI.2014.6867978.

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