Objective Comparison of Particle Tracking Methods

J 2014

Objective Comparison of Particle Tracking Methods

CHENOUARD, Nicolas, Ihor SMAL, Fabrice DE CHAUMONT, Martin MAŠKA, Ivo F SBALZARINI et. al.

Základní údaje

Originální název

Objective Comparison of Particle Tracking Methods

Autoři

CHENOUARD, Nicolas (250 Francie), Ihor SMAL (804 Ukrajina), Fabrice DE CHAUMONT (250 Francie), Martin MAŠKA (203 Česká republika, garant, domácí), Ivo F SBALZARINI (756 Švýcarsko), Yuanhao GONG (156 Čína), Janick CARDINALE (756 Švýcarsko), Craig CARTHEL (840 Spojené státy), Stefano CORALUPPI (840 Spojené státy), Mark WINTER (840 Spojené státy), Andrew R COHEN (840 Spojené státy), William J GODINEZ (276 Německo), Karl ROHR (276 Německo), Yannis KALAIDZIDIS (300 Řecko), Liang LIANG (156 Čína), James DUNCAN (840 Spojené státy), Hongying SHEN (156 Čína), Yingke XU (156 Čína), Klas E G MAGNUSSON (752 Švédsko), Joakim JALDÉN (752 Švédsko), Helen M BLAU (826 Velká Británie a Severní Irsko), Perrine PAUL-GILLOTEAUX (250 Francie), Philippe ROUDOT (250 Francie), Charles KERVRANN (250 Francie), François WAHARTE (250 Francie), Jean-Yves TINEVEZ (250 Francie), Spencer L SHORTE (826 Velká Británie a Severní Irsko), Joost WILLEMSE (528 Nizozemské království), Katherine CELLER (124 Kanada), Gilles P VAN WEZEL (528 Nizozemské království), Han-Wei DAN (158 Tchaj-wan), Yuh-Show TSAI (158 Tchaj-wan), Carlos ORTIZ-DE-SOLÓRZANO (724 Španělsko), Jean-Christophe OLIVO-MARIN (250 Francie) a Erik MEIJERING (528 Nizozemské království)

Vydání

Nature Methods, 2014, 1548-7091

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10201 Computer sciences, information science, bioinformatics

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 32.072

Kód RIV

RIV/00216224:14330/14:00074917

Organizační jednotka

Fakulta informatiky

DOI

http://dx.doi.org/10.1038/nmeth.2808

UT WoS

000332086100020

Klíčová slova anglicky

Particle tracking;performance comparison;fluorescence microscopy

Štítky

cbia-web

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 27. 4. 2015 21:48, RNDr. Pavel Šmerk, Ph.D.

Anotace

V originále

Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers.

Návaznosti

EE2.3.30.0009, projekt VaV

Název: Zaměstnáním čerstvých absolventů doktorského studia k vědecké excelenci

Citovat

CHENOUARD, Nicolas, Ihor SMAL, Fabrice DE CHAUMONT, Martin MAŠKA, Ivo F SBALZARINI, Yuanhao GONG, Janick CARDINALE, Craig CARTHEL, Stefano CORALUPPI, Mark WINTER, Andrew R COHEN, William J GODINEZ, Karl ROHR, Yannis KALAIDZIDIS, Liang LIANG, James DUNCAN, Hongying SHEN, Yingke XU, Klas E G MAGNUSSON, Joakim JALDÉN, Helen M BLAU, Perrine PAUL-GILLOTEAUX, Philippe ROUDOT, Charles KERVRANN, François WAHARTE, Jean-Yves TINEVEZ, Spencer L SHORTE, Joost WILLEMSE, Katherine CELLER, Gilles P VAN WEZEL, Han-Wei DAN, Yuh-Show TSAI, Carlos ORTIZ-DE-SOLÓRZANO, Jean-Christophe OLIVO-MARIN a Erik MEIJERING. Objective Comparison of Particle Tracking Methods. Nature Methods. 2014, roč. 11, č. 3, s. 281-289. ISSN 1548-7091. Dostupné z: https://dx.doi.org/10.1038/nmeth.2808.

@article{1160075,
   author = {Chenouard, Nicolas and Smal, Ihor and de Chaumont, Fabrice and Maška, Martin and Sbalzarini, Ivo F and Gong, Yuanhao and Cardinale, Janick and Carthel, Craig and Coraluppi, Stefano and Winter, Mark and Cohen, Andrew R and Godinez, William J and Rohr, Karl and Kalaidzidis, Yannis and Liang, Liang and Duncan, James and Shen, Hongying and Xu, Yingke and Magnusson, Klas E G and Jaldén, Joakim and Blau, Helen M and PaulandGilloteaux, Perrine and Roudot, Philippe and Kervrann, Charles and Waharte, François and Tinevez, JeanandYves and Shorte, Spencer L and Willemse, Joost and Celler, Katherine and van Wezel, Gilles P and Dan, HanandWei and Tsai, YuhandShow and OrtizanddeandSolórzano, Carlos and OlivoandMarin, JeanandChristophe and Meijering, Erik},
   article_number = {3},
   doi = {http://dx.doi.org/10.1038/nmeth.2808},
   keywords = {Particle tracking;performance comparison;fluorescence microscopy},
   language = {eng},
   issn = {1548-7091},
   journal = {Nature Methods},
   title = {Objective Comparison of Particle Tracking Methods},
   url = {http://dx.doi.org/10.1038/nmeth.2808},
   volume = {11},
   year = {2014}
}

TY  - JOUR
ID  - 1160075
AU  - Chenouard, Nicolas - Smal, Ihor - de Chaumont, Fabrice - Maška, Martin - Sbalzarini, Ivo F - Gong, Yuanhao - Cardinale, Janick - Carthel, Craig - Coraluppi, Stefano - Winter, Mark - Cohen, Andrew R - Godinez, William J - Rohr, Karl - Kalaidzidis, Yannis - Liang, Liang - Duncan, James - Shen, Hongying - Xu, Yingke - Magnusson, Klas E G - Jaldén, Joakim - Blau, Helen M - Paul-Gilloteaux, Perrine - Roudot, Philippe - Kervrann, Charles - Waharte, François - Tinevez, Jean-Yves - Shorte, Spencer L - Willemse, Joost - Celler, Katherine - van Wezel, Gilles P - Dan, Han-Wei - Tsai, Yuh-Show - Ortiz-de-Solórzano, Carlos - Olivo-Marin, Jean-Christophe - Meijering, Erik
PY  - 2014
TI  - Objective Comparison of Particle Tracking Methods
JF  - Nature Methods
VL  - 11
IS  - 3
SP  - 281-289
EP  - 281-289
SN  - 15487091
KW  - Particle tracking;performance comparison;fluorescence microscopy
UR  - http://dx.doi.org/10.1038/nmeth.2808
N2  - Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers.
ER  -

CHENOUARD, Nicolas, Ihor SMAL, Fabrice DE CHAUMONT, Martin MAŠKA, Ivo F SBALZARINI, Yuanhao GONG, Janick CARDINALE, Craig CARTHEL, Stefano CORALUPPI, Mark WINTER, Andrew R COHEN, William J GODINEZ, Karl ROHR, Yannis KALAIDZIDIS, Liang LIANG, James DUNCAN, Hongying SHEN, Yingke XU, Klas E G MAGNUSSON, Joakim JALDÉN, Helen M BLAU, Perrine PAUL-GILLOTEAUX, Philippe ROUDOT, Charles KERVRANN, Fran$\backslash$c cois WAHARTE, Jean-Yves TINEVEZ, Spencer L SHORTE, Joost WILLEMSE, Katherine CELLER, Gilles P VAN WEZEL, Han-Wei DAN, Yuh-Show TSAI, Carlos ORTIZ-DE-SOLÓRZANO, Jean-Christophe OLIVO-MARIN a Erik MEIJERING. Objective Comparison of Particle Tracking Methods. \textit{Nature Methods}. 2014, roč.~11, č.~3, s.~281-289. ISSN~1548-7091. Dostupné z: https://dx.doi.org/10.1038/nmeth.2808.

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