Visualization of Biomolecular Structures: State of the Art

D 2015

Visualization of Biomolecular Structures: State of the Art

KOZLÍKOVÁ, Barbora; Michael KRONE; Norbert LINDOW; Martin FALK; Marc BAADEN et. al.

Základní údaje

Originální název

Visualization of Biomolecular Structures: State of the Art

Autoři

KOZLÍKOVÁ, Barbora (203 Česká republika, garant, domácí); Michael KRONE (276 Německo); Norbert LINDOW (276 Německo); Martin FALK (203 Česká republika, domácí); Marc BAADEN (250 Francie); Daniel BAUM (276 Německo); Ivan VIOLA (703 Slovensko); Julius PARULEK (703 Slovensko) a Hans-Christian HEGE (276 Německo)

Vydání

Neuveden, Eurographics Conference on Visualization (EuroVis) - STARs, od s. 61-81, 21 s. 2015

Nakladatel

The Eurographics Association

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

10201 Computer sciences, information science, bioinformatics

Stát vydavatele

Švýcarsko

Utajení

není předmětem státního či obchodního tajemství

Forma vydání

elektronická verze "online"

Kód RIV

RIV/00216224:14330/15:00083058

Organizační jednotka

Fakulta informatiky

ISBN

978-3-905674-99-6

DOI

https://doi.org/10.2312/eurovisstar.20151112

EID Scopus

2-s2.0-85039057990

Klíčová slova anglicky

biomolecule;visualization;surface;molecular dynamics;reactions;level of detail

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 1. 4. 2021 16:12, RNDr. Pavel Šmerk, Ph.D.

Anotace

V originále

Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on computerized geometric and visual representations of three-dimensional, complex, large, and time-varying molecular structures. The report presents a taxonomy that demonstrates which areas of molecular visualization have already been extensively investigated and where the field is currently heading. It discusses visualizations for molecular structures, strategies for efficient display regarding image quality and frame rate, covers different aspects of level of detail, and reviews visualizations illustrating the dynamic aspects of molecular simulation data. The report concludes with an outlook on promising and important research topics to enable further success in advancing the knowledge about interaction of molecular structures.

Návaznosti

7AMB15AT018, projekt VaV

Název: Vizualizace a interaktivní prozkoumávání dynamického chování velkých molekulárních systémů

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Vizualizace a interaktivní prozkoumávání dynamického chování velkých molekulárních systémů

Citovat

KOZLÍKOVÁ, Barbora; Michael KRONE; Norbert LINDOW; Martin FALK; Marc BAADEN; Daniel BAUM; Ivan VIOLA; Julius PARULEK a Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art. Online. In R. Borgo and F. Ganovelli and I. Viola. Eurographics Conference on Visualization (EuroVis) - STARs. Neuveden: The Eurographics Association, 2015, s. 61-81. ISBN 978-3-905674-99-6. Dostupné z: https://doi.org/10.2312/eurovisstar.20151112.

@inproceedings{1300514,
   author = {Kozlíková, Barbora and Krone, Michael and Lindow, Norbert and Falk, Martin and Baaden, Marc and Baum, Daniel and Viola, Ivan and Parulek, Julius and Hege, HansandChristian},
   address = {Neuveden},
   booktitle = {Eurographics Conference on Visualization (EuroVis) - STARs},
   doi = {https://doi.org/10.2312/eurovisstar.20151112},
   editor = {R. Borgo and F. Ganovelli and I. Viola},
   keywords = {biomolecule;visualization;surface;molecular dynamics;reactions;level of detail},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {Neuveden},
   isbn = {978-3-905674-99-6},
   pages = {61-81},
   publisher = {The Eurographics Association},
   title = {Visualization of Biomolecular Structures: State of the Art},
   year = {2015}
}

TY  - CONF
ID  - 1300514
AU  - Kozlíková, Barbora - Krone, Michael - Lindow, Norbert - Falk, Martin - Baaden, Marc - Baum, Daniel - Viola, Ivan - Parulek, Julius - Hege, Hans-Christian
PY  - 2015
TI  - Visualization of Biomolecular Structures: State of the Art
PB  - The Eurographics Association
CY  - Neuveden
SN  - 9783905674996
KW  - biomolecule;visualization;surface;molecular dynamics;reactions;level of detail
N2  - Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on computerized geometric and visual representations of three-dimensional, complex, large, and time-varying molecular structures. The report presents a taxonomy that demonstrates which areas of molecular visualization have already been extensively investigated and where the field is currently heading. It discusses visualizations for molecular structures, strategies for efficient display regarding image quality and frame rate, covers different aspects of level of detail, and reviews visualizations illustrating the dynamic aspects of molecular simulation data. The report concludes with an outlook on promising and important research topics to enable further success in advancing the knowledge about interaction of molecular structures.
ER  -

KOZLÍKOVÁ, Barbora; Michael KRONE; Norbert LINDOW; Martin FALK; Marc BAADEN; Daniel BAUM; Ivan VIOLA; Julius PARULEK a Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art. Online. In R. Borgo and F. Ganovelli and I. Viola. \textit{Eurographics Conference on Visualization (EuroVis) - STARs}. Neuveden: The Eurographics Association, 2015, s.~61-81. ISBN~978-3-905674-99-6. Dostupné z: https://doi.org/10.2312/eurovisstar.20151112.

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