Detailed Information on Publication Record
2015
Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes
TROJÁK, Matej, Tadeáš DĚD, David ŠAFRÁNEK, Matej KLEMENT, Jan ČERVENÝ et. al.Basic information
Original name
Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes
Authors
TROJÁK, Matej (703 Slovakia, belonging to the institution), Tadeáš DĚD (203 Czech Republic), David ŠAFRÁNEK (203 Czech Republic, guarantor, belonging to the institution), Matej KLEMENT (703 Slovakia), Jan ČERVENÝ (203 Czech Republic) and Luboš BRIM (203 Czech Republic, belonging to the institution)
Edition
13th Conference on Computational Methods in Systems Biology, 2015
Other information
Language
English
Type of outcome
Prezentace na konferencích
Field of Study
10201 Computer sciences, information science, bioinformatics
Country of publisher
Czech Republic
Confidentiality degree
není předmětem státního či obchodního tajemství
RIV identification code
RIV/00216224:14330/15:00081135
Organization unit
Faculty of Informatics
Keywords in English
formal specification; biological systems; systems biology; rule-based language
Tags
International impact, Reviewed
Změněno: 5/9/2016 12:32, prof. RNDr. Luboš Brim, CSc.
Abstract
V originále
Biochemical Space (BCS) is a novel framework for practical description of complex biological processes. It is developed as a part of Comprehensive Modelling Platform (CMP) -- a web-based platform for modelling and analysis of biological processes. In the context of CMP, Biochemical Space glues together complicated quantitative models with an easy-to-understand but yet formal and compact qualitative description. BCS allows to specify formal and well-annotated reaction networks of chemical entities and elemental reactions onto which the mathematical models are projected. BCS is supported by a Biochemical Space Language (BCSL) that combines state-of-the-art rule-based techniques with meta-data formats developed in well-known annotation databases.
Links
| GA15-11089S, research and development project |
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