Terra incognita – sequencing projects of monogeneans parasites

k 2015

Terra incognita – sequencing projects of monogeneans parasites

VOREL, Jiří, Dagmar JIRSOVÁ, Jana ILGOVÁ, Pavel ROUDNICKÝ, Hynek STRNAD et. al.

Základní údaje

Originální název

Terra incognita – sequencing projects of monogeneans parasites

Autoři

VOREL, Jiří (203 Česká republika, domácí), Dagmar JIRSOVÁ (203 Česká republika), Jana ILGOVÁ (703 Slovensko), Pavel ROUDNICKÝ (203 Česká republika), Hynek STRNAD (203 Česká republika), Lucie JEDLIČKOVÁ (203 Česká republika), Hana DVOŘÁKOVÁ (203 Česká republika), Karolína SKIPALOVÁ (203 Česká republika), Libor MIKEŠ (203 Česká republika), Petr BROŽ (203 Česká republika), Roman LEONTOVYČ (203 Česká republika), Ewa DZIKA (616 Polsko), Božena KOUBKOVÁ (203 Česká republika), Milan GELNAR (203 Česká republika) a Martin KAŠNÝ (203 Česká republika)

Vydání

Grid computing workshop, 2015

Další údaje

Jazyk

angličtina

Typ výsledku

Prezentace na konferencích

Obor

10600 1.6 Biological sciences

Stát vydavatele

Česká republika

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Kód RIV

RIV/00216224:14310/15:00094523

Organizační jednotka

Přírodovědecká fakulta

Klíčová slova česky

NGS, Monogenea, genom, transkriptom

Klíčová slova anglicky

NGS; Monogenea; genome; transcriptome

Změněno: 16. 2. 2018 14:49, Mgr. Jiří Vorel, Ph.D.

Anotace

V originále

Parasitic monogeneans are important blood sucking fish ectoparasites. Their presence can lead to significant losses in fish stocks. Our understanding to the biological processes of monogeneans is based also on detailed knowledge of their molecular biology and biochemistry. By using the modern sequencing methods and computer databases (genomic, transcriptomic and proteomic) we can now faster and more accurately identify numerous sets of protein molecules which are essential for life of these parasites. From a large group of Monogenea (assume the existence up to 25 000 species). Only one species has was deeply sequenced – genome of Gyrodactylus salaris (Monogenea: Gyrodactylidae) from 2014. We would like to change this situation and therefore we adopted Eudiplozoon nipponicum (Monogenea: Diplozoidae) as a model organism and started some preliminary analyses leaded to generation of E. nipponicum genome, transcriptome and proteome databases.

Návaznosti

GBP505/12/G112, projekt VaV

Název: ECIP - Evropské centrum ichtyoparazitologie

Investor: Grantová agentura ČR, ECIP - Evropské centrum ichtyoparazitologie

Citovat

VOREL, Jiří, Dagmar JIRSOVÁ, Jana ILGOVÁ, Pavel ROUDNICKÝ, Hynek STRNAD, Lucie JEDLIČKOVÁ, Hana DVOŘÁKOVÁ, Karolína SKIPALOVÁ, Libor MIKEŠ, Petr BROŽ, Roman LEONTOVYČ, Ewa DZIKA, Božena KOUBKOVÁ, Milan GELNAR a Martin KAŠNÝ. Terra incognita – sequencing projects of monogeneans parasites. In Grid computing workshop. 2015.

@proceedings{1319619,
   author = {Vorel, Jiří and Jirsová, Dagmar and Ilgová, Jana and Roudnický, Pavel and Strnad, Hynek and Jedličková, Lucie and Dvořáková, Hana and Skipalová, Karolína and Mikeš, Libor and Brož, Petr and Leontovyč, Roman and Dzika, Ewa and Koubková, Božena and Gelnar, Milan and Kašný, Martin},
   booktitle = {Grid computing workshop},
   keywords = {NGS; Monogenea; genome; transcriptome},
   language = {eng},
   title = {Terra incognita – sequencing projects of monogeneans parasites},
   url = {http://metavo.metacentrum.cz/cs/seminars/seminar2015/index.html},
   year = {2015}
}

TY  - CONF
ID  - 1319619
AU  - Vorel, Jiří - Jirsová, Dagmar - Ilgová, Jana - Roudnický, Pavel - Strnad, Hynek - Jedličková, Lucie - Dvořáková, Hana - Skipalová, Karolína - Mikeš, Libor - Brož, Petr - Leontovyč, Roman - Dzika, Ewa - Koubková, Božena - Gelnar, Milan - Kašný, Martin
PY  - 2015
TI  - Terra incognita – sequencing projects of monogeneans parasites
KW  - NGS
KW  - Monogenea
KW  - genome
KW  - transcriptome
UR  - http://metavo.metacentrum.cz/cs/seminars/seminar2015/index.html
N2  - Parasitic monogeneans are important blood sucking fish ectoparasites. Their presence can lead to significant losses in fish stocks. Our understanding to the biological processes of monogeneans is based also on detailed knowledge of their molecular biology and biochemistry. By using the modern sequencing methods and computer databases (genomic, transcriptomic and proteomic) we can now faster and more accurately identify numerous sets of protein molecules which are essential for life of these parasites. From a large group of Monogenea (assume the existence up to 25 000 species). Only one species has was deeply sequenced – genome of Gyrodactylus salaris (Monogenea: Gyrodactylidae) from 2014. We would like to change this situation and therefore we adopted Eudiplozoon nipponicum (Monogenea: Diplozoidae) as a model organism and started some preliminary analyses leaded to generation of E. nipponicum genome, transcriptome and proteome databases.
ER  -

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