Towards an efficient data assimilation in physically-based
medical simulations

D 2015

Towards an efficient data assimilation in physically-based medical simulations

PETERLÍK, Igor a Antonín KLÍMA

Základní údaje

Originální název

Towards an efficient data assimilation in physically-based medical simulations

Název česky

Směrem k efektivní datové asimilaci medicínských simulací založených na fyzice

Autoři

PETERLÍK, Igor (703 Slovensko, garant, domácí) a Antonín KLÍMA (203 Česká republika, domácí)

Vydání

Washington, D.C. , USA, Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015, od s. 1412-1419, 8 s. 2015

Nakladatel

IEEE

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

10201 Computer sciences, information science, bioinformatics

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Forma vydání

elektronická verze "online"

Odkazy

URL

Kód RIV

RIV/00216224:14610/15:00086693

Organizační jednotka

Ústav výpočetní techniky

ISBN

978-1-4673-6798-1

DOI

http://dx.doi.org/10.1109/BIBM.2015.7359884

UT WoS

000377335600241

Klíčová slova anglicky

Data Assimilation; Kalman Filtering; Non-linear elasticity; Finite Element Method; Patient-specific Modeling

Štítky

firank_B, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 27. 8. 2019 11:58, RNDr. Pavel Šmerk, Ph.D.

Anotace

V originále

Computer simulation of soft tissues is rapidly be- coming an important aspect of medical training, pre-operative planning and intra-operative navigation. Whereas in medical training, generic models are usually employed, both planing and navigation require patient-specific modeling. However, creating a patient-specific model is a challenging task, as many of the mechanical parameters of the organ tissues are unknown. One way of addressing the issue is to extend the deterministic simulation by methods based on stochastic modeling. In this paper we focus on parameter estimation in models with large number of degrees of freedom based on a variant of Kalman filtering. The main contribution of the paper is a detailed description of an integration of two advanced concepts of numerical modeling: we employ a state-of-the-art method of data assimilation based on reduced-order Kalman filtering in order to perform parameter estimation of a finite-element model of non-linear elasticity used in medical simulations. In order to assess the method, we present a preliminary evaluation of the accuracy of the parameter estimation as well as the performance using synthetic data with added noise. We also evaluate the parallelized version of the prediction phase and finally we describe further perspectives which, as we believe, will bring the data assimilation of models with many parameters closer to the real-time processing.

Citovat

PETERLÍK, Igor a Antonín KLÍMA. Towards an efficient data assimilation in physically-based medical simulations. Online. In Bin Ma et al. Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015. Washington, D.C. , USA: IEEE, 2015, s. 1412-1419. ISBN 978-1-4673-6798-1. Dostupné z: https://dx.doi.org/10.1109/BIBM.2015.7359884.

@inproceedings{1336341,
   author = {Peterlík, Igor and Klíma, Antonín},
   address = {Washington, D.C. , USA},
   booktitle = {Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015},
   doi = {http://dx.doi.org/10.1109/BIBM.2015.7359884},
   editor = {Bin Ma et al.},
   keywords = {Data Assimilation; Kalman Filtering; Non-linear elasticity; Finite Element Method; Patient-specific Modeling},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {Washington, D.C. , USA},
   isbn = {978-1-4673-6798-1},
   pages = {1412-1419},
   publisher = {IEEE},
   title = {Towards an efficient data assimilation in physically-based medical simulations},
   url = {http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=7359884&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359884},
   year = {2015}
}

TY  - JOUR
ID  - 1336341
AU  - Peterlík, Igor - Klíma, Antonín
PY  - 2015
TI  - Towards an efficient data assimilation in physically-based medical simulations
PB  - IEEE
CY  - Washington, D.C. , USA
SN  - 9781467367981
KW  - Data Assimilation
KW  - Kalman Filtering
KW  - Non-linear elasticity
KW  - Finite Element Method
KW  - Patient-specific Modeling
UR  - http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=7359884&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359884
N2  - Computer simulation of soft tissues is rapidly be- coming an important aspect of medical training, pre-operative planning and intra-operative navigation. Whereas in medical training, generic models are usually employed, both planing and navigation require patient-specific modeling. However, creating a patient-specific model is a challenging task, as many of the mechanical parameters of the organ tissues are unknown. One way of addressing the issue is to extend the deterministic simulation by methods based on stochastic modeling. In this paper we focus on parameter estimation in models with large number of degrees of freedom based on a variant of Kalman filtering. The main contribution of the paper is a detailed description of an integration of two advanced concepts of numerical modeling: we employ a state-of-the-art method of data assimilation based on reduced-order Kalman filtering in order to perform parameter estimation of a finite-element model of non-linear elasticity used in medical simulations. In order to assess the method, we present a preliminary evaluation of the accuracy of the parameter estimation as well as the performance using synthetic data with added noise. We also evaluate the parallelized version of the prediction phase and finally we describe further perspectives which, as we believe, will bring the data assimilation of models with many parameters closer to the real-time processing.
ER  -

PETERLÍK, Igor a Antonín KLÍMA. Towards an efficient data assimilation in physically-based medical simulations. Online. In Bin Ma et al. \textit{Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015}. Washington, D.C. , USA: IEEE, 2015, s.~1412-1419. ISBN~978-1-4673-6798-1. Dostupné z: https://dx.doi.org/10.1109/BIBM.2015.7359884.

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