Classification of strain CCM 4446T as Rhodococcus degradans sp.
nov.

J 2015

Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.

ŠVEC, Pavel, Jitka ČERNOHLÁVKOVÁ, Hans Jurgen BUSSE, Hana VOJTKOVÁ, Roman PANTŮČEK et. al.

Základní údaje

Originální název

Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.

Autoři

ŠVEC, Pavel (203 Česká republika, garant, domácí), Jitka ČERNOHLÁVKOVÁ (203 Česká republika, domácí), Hans Jurgen BUSSE (40 Rakousko), Hana VOJTKOVÁ (203 Česká republika), Roman PANTŮČEK (203 Česká republika, domácí), Margo CNOCKAERT (56 Belgie), Ivana MAŠLAŇOVÁ (203 Česká republika, domácí), Stanislava KRÁLOVÁ (703 Slovensko, domácí), Peter VANDAMME (56 Belgie) a Ivo SEDLÁČEK (203 Česká republika, domácí)

Vydání

International Journal of Systematic and Evolutionary Microbiology, Society for General Microbiology, 2015, 1466-5026

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 2.439

Kód RIV

RIV/00216224:14310/15:00086923

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1099/ijsem.0.000584

UT WoS

000370460600014

Klíčová slova anglicky

Rhodococcus degradans sp. nov.; taxonomy; biodegradation

Štítky

AKR, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 27. 2. 2019 11:47, prof. RNDr. Roman Pantůček, Ph.D.

Anotace

V originále

Strain CCM 4446T, with notable biodegradation capabilities, was investigated in this study in order to elucidate its taxonomic position. Chemotaxonomic analyses of quinones, polar lipids, mycolic acids, polyamines and the diamino acid of the cell-wall peptidoglycan corresponded with characteristics of the genus Rhodococcus. Phylogenetic analysis, based on the 16S rRNA gene sequence, assigned strain CCM 4446T to the genus Rhodococcus and placed it in the Rhodococcus erythropolis 16S rRNA gene clade. Further analysis of catA and gyrB gene sequences, automated ribotyping with EcoRI restriction endonuclease, whole-cell protein profiling, DNA–DNA hybridization and extensive biotyping enabled differentiation of strain CCM 4446T from all phylogenetically closely related species, i.e., Rhodococcus baikonurensis, Rhodococcus qingshengii, Rhodococcus erythropolis and Rhodococcus globerulus. The results obtained show that the strain investigated represents a novel species within the genus Rhodococcus, for which the name Rhodococcus degradans sp. nov., is proposed. The type strain is CCM 4446T (LMG 28633T).

Návaznosti

EE2.3.20.0183, projekt VaV

Název: Centrum experimentální biomedicíny

Citovat

ŠVEC, Pavel, Jitka ČERNOHLÁVKOVÁ, Hans Jurgen BUSSE, Hana VOJTKOVÁ, Roman PANTŮČEK, Margo CNOCKAERT, Ivana MAŠLAŇOVÁ, Stanislava KRÁLOVÁ, Peter VANDAMME a Ivo SEDLÁČEK. Classification of strain CCM 4446T as Rhodococcus degradans sp. nov. International Journal of Systematic and Evolutionary Microbiology. Society for General Microbiology, 2015, roč. 65, December, s. 4381-4387. ISSN 1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijsem.0.000584.

@article{1338541,
   author = {Švec, Pavel and Černohlávková, Jitka and Busse, Hans Jurgen and Vojtková, Hana and Pantůček, Roman and Cnockaert, Margo and Mašlaňová, Ivana and Králová, Stanislava and Vandamme, Peter and Sedláček, Ivo},
   article_number = {December},
   doi = {http://dx.doi.org/10.1099/ijsem.0.000584},
   keywords = {Rhodococcus degradans sp. nov.; taxonomy; biodegradation},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of Systematic and Evolutionary Microbiology},
   title = {Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.},
   url = {http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000584},
   volume = {65},
   year = {2015}
}

TY  - JOUR
ID  - 1338541
AU  - Švec, Pavel - Černohlávková, Jitka - Busse, Hans Jurgen - Vojtková, Hana - Pantůček, Roman - Cnockaert, Margo - Mašlaňová, Ivana - Králová, Stanislava - Vandamme, Peter - Sedláček, Ivo
PY  - 2015
TI  - Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.
JF  - International Journal of Systematic and Evolutionary Microbiology
VL  - 65
IS  - December
SP  - 4381-4387
EP  - 4381-4387
PB  - Society for General Microbiology
SN  - 14665026
KW  - Rhodococcus degradans sp. nov.
KW  - taxonomy
KW  - biodegradation
UR  - http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000584
N2  - Strain CCM 4446T, with notable biodegradation capabilities, was investigated in this study in order to elucidate its taxonomic position. Chemotaxonomic analyses of quinones, polar lipids, mycolic acids, polyamines and the diamino acid of the cell-wall peptidoglycan corresponded with characteristics of the genus Rhodococcus. Phylogenetic analysis, based on the 16S rRNA gene sequence, assigned strain CCM 4446T to the genus Rhodococcus and placed it in the Rhodococcus erythropolis 16S rRNA gene clade. Further analysis of catA and gyrB gene sequences, automated ribotyping with EcoRI restriction endonuclease, whole-cell protein profiling, DNA–DNA hybridization and extensive biotyping enabled differentiation of strain CCM 4446T from all phylogenetically closely related species, i.e., Rhodococcus baikonurensis, Rhodococcus qingshengii, Rhodococcus erythropolis and Rhodococcus globerulus. The results obtained show that the strain investigated represents a novel species within the genus Rhodococcus, for which the name Rhodococcus degradans sp. nov., is proposed. The type strain is CCM 4446T (LMG 28633T).
ER  -

ŠVEC, Pavel, Jitka ČERNOHLÁVKOVÁ, Hans Jurgen BUSSE, Hana VOJTKOVÁ, Roman PANTŮČEK, Margo CNOCKAERT, Ivana MAŠLAŇOVÁ, Stanislava KRÁLOVÁ, Peter VANDAMME a Ivo SEDLÁČEK. Classification of strain CCM 4446T as Rhodococcus degradans sp. nov. \textit{International Journal of Systematic and Evolutionary Microbiology}. Society for General Microbiology, 2015, roč.~65, December, s.~4381-4387. ISSN~1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijsem.0.000584.

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