Tools and data services registry: a community effort to
document bioinformatics resources

J 2016

Tools and data services registry: a community effort to document bioinformatics resources

ISON, Jon, Kristoffer RAPACKI, Herve MENAGER, Matus KALAS, Emil RYDZA et. al.

Základní údaje

Originální název

Tools and data services registry: a community effort to document bioinformatics resources

Autoři

ISON, Jon (208 Dánsko), Kristoffer RAPACKI (208 Dánsko), Herve MENAGER (250 Francie), Matus KALAS (578 Norsko), Emil RYDZA (208 Dánsko), Piotr CHMURA (208 Dánsko), Christian ANTHON (208 Dánsko), Niall BEARD (826 Velká Británie a Severní Irsko), Karel BERKA (203 Česká republika), Dan BOLSER (826 Velká Británie a Severní Irsko), Tim BOOTH (826 Velká Británie a Severní Irsko), Anthony BRETAUDEAU (250 Francie), Jan BREZOVSKÝ (203 Česká republika, garant, domácí), Rita CASADIO (380 Itálie), Gianni CESARENI (380 Itálie), Frederik COPPENS (56 Belgie), Michael CORNELL (826 Velká Británie a Severní Irsko), Gianmauro CUCCURU (380 Itálie), Kristian DAVIDSEN (208 Dánsko), Gianluca DELLA VEDOVA (380 Itálie), Tunca DOGAN (826 Velká Británie a Severní Irsko), Olivia DOPPELT-AZEROUAL (250 Francie), Laura EMERY (826 Velká Británie a Severní Irsko), Elisabeth GASTEIGER (756 Švýcarsko), Thomas GATTER (276 Německo), Tatyana GOLDBERG (276 Německo), Marie GROSJEAN (250 Francie), Bjoern GRUNING (276 Německo), Manuela HELMER-CITTERICH (380 Itálie), Hans IENASESCU (208 Dánsko), Vassilios IOANNIDIS (756 Švýcarsko), Martin Closter JESPERSEN (208 Dánsko), Rafael JIMENEZ (826 Velká Británie a Severní Irsko), Nick JUTY (826 Velká Británie a Severní Irsko), Peter JUVAN (705 Slovinsko), Maximilian KOCH (826 Velká Británie a Severní Irsko), Camille LAIBE (826 Velká Británie a Severní Irsko), Jing-Woei LI (156 Čína), Luana LICATA (380 Itálie), Fabien MAREUIL (250 Francie), Ivan MICETIC (380 Itálie), Rune Mollegaard FRIBORG (208 Dánsko), Sebastien MORETTI (756 Švýcarsko), Chris MORRIS (826 Velká Británie a Severní Irsko), Steffen MOLLER (276 Německo), Aleksandra NENADIC (826 Velká Británie a Severní Irsko), Hedi PETERSON (233 Estonsko), Giuseppe PROFITI (380 Itálie), Peter RICE (826 Velká Británie a Severní Irsko), Paolo ROMANO (380 Itálie), Paola RONCAGLIA (826 Velká Británie a Severní Irsko), Rabie SAIDI (826 Velká Británie a Severní Irsko), Andrea SCHAFFERHANS (276 Německo), Veit SCHWAMMLE (208 Dánsko), Callum SMITH (826 Velká Británie a Severní Irsko), Maria Maddalena SPEROTTO (208 Dánsko), Heinz STOCKINGER (756 Švýcarsko), Radka SVOBODOVÁ VAŘEKOVÁ (203 Česká republika, domácí), Silvio C. E. TOSATTO (380 Itálie), Victor DE LA TORRE (724 Španělsko), Paolo UVA (380 Itálie), Allegra VIA (380 Itálie), Guy YACHDAV (276 Německo), Federico ZAMBELLI (380 Itálie), Gert VRIEND (528 Nizozemské království), Burkhard ROST (276 Německo), Helen PARKINSON (826 Velká Británie a Severní Irsko), Peter LONGREEN (208 Dánsko) a Soren BRUNAK (208 Dánsko)

Vydání

Nucleic Acids Research, Oxford, Oxford University Press, 2016, 0305-1048

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 10.162

Kód RIV

RIV/00216224:14310/16:00089977

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1093/nar/gkv1116

UT WoS

000371261700005

Klíčová slova anglicky

MOLECULAR-BIOLOGY; SOFTWARE-DEVELOPMENT; LIFE SCIENCES; WEB SERVICES; COLLECTION; COMPILATION; SEQANSWERS; FRAMEWORK

Štítky

AKR, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 21. 3. 2017 15:46, Mgr. Eva Špillingová

Anotace

V originále

Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.

Citovat

ISON, Jon, Kristoffer RAPACKI, Herve MENAGER, Matus KALAS, Emil RYDZA, Piotr CHMURA, Christian ANTHON, Niall BEARD, Karel BERKA, Dan BOLSER, Tim BOOTH, Anthony BRETAUDEAU, Jan BREZOVSKÝ, Rita CASADIO, Gianni CESARENI, Frederik COPPENS, Michael CORNELL, Gianmauro CUCCURU, Kristian DAVIDSEN, Gianluca DELLA VEDOVA, Tunca DOGAN, Olivia DOPPELT-AZEROUAL, Laura EMERY, Elisabeth GASTEIGER, Thomas GATTER, Tatyana GOLDBERG, Marie GROSJEAN, Bjoern GRUNING, Manuela HELMER-CITTERICH, Hans IENASESCU, Vassilios IOANNIDIS, Martin Closter JESPERSEN, Rafael JIMENEZ, Nick JUTY, Peter JUVAN, Maximilian KOCH, Camille LAIBE, Jing-Woei LI, Luana LICATA, Fabien MAREUIL, Ivan MICETIC, Rune Mollegaard FRIBORG, Sebastien MORETTI, Chris MORRIS, Steffen MOLLER, Aleksandra NENADIC, Hedi PETERSON, Giuseppe PROFITI, Peter RICE, Paolo ROMANO, Paola RONCAGLIA, Rabie SAIDI, Andrea SCHAFFERHANS, Veit SCHWAMMLE, Callum SMITH, Maria Maddalena SPEROTTO, Heinz STOCKINGER, Radka SVOBODOVÁ VAŘEKOVÁ, Silvio C. E. TOSATTO, Victor DE LA TORRE, Paolo UVA, Allegra VIA, Guy YACHDAV, Federico ZAMBELLI, Gert VRIEND, Burkhard ROST, Helen PARKINSON, Peter LONGREEN a Soren BRUNAK. Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. Oxford: Oxford University Press, 2016, roč. 44, D1, s. "D38"-"D47", 10 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkv1116.

@article{1345757,
   author = {Ison, Jon and Rapacki, Kristoffer and Menager, Herve and Kalas, Matus and Rydza, Emil and Chmura, Piotr and Anthon, Christian and Beard, Niall and Berka, Karel and Bolser, Dan and Booth, Tim and Bretaudeau, Anthony and Brezovský, Jan and Casadio, Rita and Cesareni, Gianni and Coppens, Frederik and Cornell, Michael and Cuccuru, Gianmauro and Davidsen, Kristian and Della Vedova, Gianluca and Dogan, Tunca and DoppeltandAzeroual, Olivia and Emery, Laura and Gasteiger, Elisabeth and Gatter, Thomas and Goldberg, Tatyana and Grosjean, Marie and Gruning, Bjoern and HelmerandCitterich, Manuela and Ienasescu, Hans and Ioannidis, Vassilios and Jespersen, Martin Closter and Jimenez, Rafael and Juty, Nick and Juvan, Peter and Koch, Maximilian and Laibe, Camille and Li, JingandWoei and Licata, Luana and Mareuil, Fabien and Micetic, Ivan and Friborg, Rune Mollegaard and Moretti, Sebastien and Morris, Chris and Moller, Steffen and Nenadic, Aleksandra and Peterson, Hedi and Profiti, Giuseppe and Rice, Peter and Romano, Paolo and Roncaglia, Paola and Saidi, Rabie and Schafferhans, Andrea and Schwammle, Veit and Smith, Callum and Sperotto, Maria Maddalena and Stockinger, Heinz and Svobodová Vařeková, Radka and Tosatto, Silvio C. E. and de la Torre, Victor and Uva, Paolo and Via, Allegra and Yachdav, Guy and Zambelli, Federico and Vriend, Gert and Rost, Burkhard and Parkinson, Helen and Longreen, Peter and Brunak, Soren},
   article_location = {Oxford},
   article_number = {D1},
   doi = {http://dx.doi.org/10.1093/nar/gkv1116},
   keywords = {MOLECULAR-BIOLOGY; SOFTWARE-DEVELOPMENT; LIFE SCIENCES; WEB SERVICES; COLLECTION; COMPILATION; SEQANSWERS; FRAMEWORK},
   language = {eng},
   issn = {0305-1048},
   journal = {Nucleic Acids Research},
   title = {Tools and data services registry: a community effort to document bioinformatics resources},
   url = {https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkv1116},
   volume = {44},
   year = {2016}
}

TY  - JOUR
ID  - 1345757
AU  - Ison, Jon - Rapacki, Kristoffer - Menager, Herve - Kalas, Matus - Rydza, Emil - Chmura, Piotr - Anthon, Christian - Beard, Niall - Berka, Karel - Bolser, Dan - Booth, Tim - Bretaudeau, Anthony - Brezovský, Jan - Casadio, Rita - Cesareni, Gianni - Coppens, Frederik - Cornell, Michael - Cuccuru, Gianmauro - Davidsen, Kristian - Della Vedova, Gianluca - Dogan, Tunca - Doppelt-Azeroual, Olivia - Emery, Laura - Gasteiger, Elisabeth - Gatter, Thomas - Goldberg, Tatyana - Grosjean, Marie - Gruning, Bjoern - Helmer-Citterich, Manuela - Ienasescu, Hans - Ioannidis, Vassilios - Jespersen, Martin Closter - Jimenez, Rafael - Juty, Nick - Juvan, Peter - Koch, Maximilian - Laibe, Camille - Li, Jing-Woei - Licata, Luana - Mareuil, Fabien - Micetic, Ivan - Friborg, Rune Mollegaard - Moretti, Sebastien - Morris, Chris - Moller, Steffen - Nenadic, Aleksandra - Peterson, Hedi - Profiti, Giuseppe - Rice, Peter - Romano, Paolo - Roncaglia, Paola - Saidi, Rabie - Schafferhans, Andrea - Schwammle, Veit - Smith, Callum - Sperotto, Maria Maddalena - Stockinger, Heinz - Svobodová Vařeková, Radka - Tosatto, Silvio C. E. - de la Torre, Victor - Uva, Paolo - Via, Allegra - Yachdav, Guy - Zambelli, Federico - Vriend, Gert - Rost, Burkhard - Parkinson, Helen - Longreen, Peter - Brunak, Soren
PY  - 2016
TI  - Tools and data services registry: a community effort to document bioinformatics resources
JF  - Nucleic Acids Research
VL  - 44
IS  - D1
SP  - "D38"-"D47"
EP  - "D38"-"D47"
PB  - Oxford University Press
SN  - 03051048
KW  - MOLECULAR-BIOLOGY
KW  - SOFTWARE-DEVELOPMENT
KW  - LIFE SCIENCES
KW  - WEB SERVICES
KW  - COLLECTION
KW  - COMPILATION
KW  - SEQANSWERS
KW  - FRAMEWORK
UR  - https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkv1116
L2  - https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkv1116
N2  - Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.
ER  -

ISON, Jon, Kristoffer RAPACKI, Herve MENAGER, Matus KALAS, Emil RYDZA, Piotr CHMURA, Christian ANTHON, Niall BEARD, Karel BERKA, Dan BOLSER, Tim BOOTH, Anthony BRETAUDEAU, Jan BREZOVSKÝ, Rita CASADIO, Gianni CESARENI, Frederik COPPENS, Michael CORNELL, Gianmauro CUCCURU, Kristian DAVIDSEN, Gianluca DELLA VEDOVA, Tunca DOGAN, Olivia DOPPELT-AZEROUAL, Laura EMERY, Elisabeth GASTEIGER, Thomas GATTER, Tatyana GOLDBERG, Marie GROSJEAN, Bjoern GRUNING, Manuela HELMER-CITTERICH, Hans IENASESCU, Vassilios IOANNIDIS, Martin Closter JESPERSEN, Rafael JIMENEZ, Nick JUTY, Peter JUVAN, Maximilian KOCH, Camille LAIBE, Jing-Woei LI, Luana LICATA, Fabien MAREUIL, Ivan MICETIC, Rune Mollegaard FRIBORG, Sebastien MORETTI, Chris MORRIS, Steffen MOLLER, Aleksandra NENADIC, Hedi PETERSON, Giuseppe PROFITI, Peter RICE, Paolo ROMANO, Paola RONCAGLIA, Rabie SAIDI, Andrea SCHAFFERHANS, Veit SCHWAMMLE, Callum SMITH, Maria Maddalena SPEROTTO, Heinz STOCKINGER, Radka SVOBODOVÁ VAŘEKOVÁ, Silvio C. E. TOSATTO, Victor DE LA TORRE, Paolo UVA, Allegra VIA, Guy YACHDAV, Federico ZAMBELLI, Gert VRIEND, Burkhard ROST, Helen PARKINSON, Peter LONGREEN a Soren BRUNAK. Tools and data services registry: a community effort to document bioinformatics resources. \textit{Nucleic Acids Research}. Oxford: Oxford University Press, 2016, roč.~44, D1, s.~''D38''-''D47'', 10 s. ISSN~0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkv1116.

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