Complete genome characterisation and phylogenetic position of
Tigray hantavirus from the Ethiopian white-footed mouse,
Stenocephalemys albipes

J 2016

Complete genome characterisation and phylogenetic position of Tigray hantavirus from the Ethiopian white-footed mouse, Stenocephalemys albipes

GOÜY DE BELLOCQ, Joëlle, Jana TĚŠÍKOVÁ, Yonas MEHERETU, Dagmar ČÍŽKOVÁ, Anna BRYJOVÁ et. al.

Základní údaje

Originální název

Complete genome characterisation and phylogenetic position of Tigray hantavirus from the Ethiopian white-footed mouse, Stenocephalemys albipes

Autoři

GOÜY DE BELLOCQ, Joëlle (250 Francie), Jana TĚŠÍKOVÁ (203 Česká republika, domácí), Yonas MEHERETU (231 Etiopie), Dagmar ČÍŽKOVÁ (203 Česká republika), Anna BRYJOVÁ (203 Česká republika), Herwig LEIRS (56 Belgie) a Josef BRYJA (203 Česká republika, garant, domácí)

Vydání

Infection, Genetics and Evolution, Amsterdam, Elsevier Science, 2016, 1567-1348

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10700 1.7 Other natural sciences

Stát vydavatele

Nizozemské království

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 2.885

Kód RIV

RIV/00216224:14310/16:00095886

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1016/j.meegid.2016.09.009

UT WoS

000388574400032

Klíčová slova anglicky

Hantavirus; Murinae; Ethiopia; High throughput sequencing; Genomics

Štítky

NZ, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 13. 4. 2018 12:59, Ing. Nicole Zrilić

Anotace

V originále

Hantaviruses, well-known human pathogens, have only recently been identified on the African continent. Tigray virus (TIGV) was found in Ethiopia in 2012 in a Murinae species, Stenocephalemys albipes, but the genetic data obtained at that time were too limited to correctly assess its phylogenetic position within the hantavirus tree. We used high throughput sequencing to determine the complete genome of TIGV, which showed a typical hantavirus organisation. The large (L), medium (M), and small (S) genome segments were found to be 6532, 3594 and 1908 nucleotides long, respectively, and the 5' and 3' termini for all three segments were predicted to form the panhandle-like structure typical for bunyaviruses. Nucleotide-based phylogenetic analyses revealed that all three coding segments cluster in the phylogroup III sensu Guo et al. (2013). However, while TIGV S segment is basal to the Murinae-associated hantaviruses, the M and L segments are basal to the Soricomorpha-associated hantaviruses. TIGV is the first Murinae-borne hantavirus showing this inconsistent segmental clustering in the hantavirus phylogenetic tree. We finally propose non-exclusive scenarios that could explain the original phylogenetic position of TIGV. (C) 2016 Elsevier B.V. All rights reserved.

Citovat

GOÜY DE BELLOCQ, Joëlle, Jana TĚŠÍKOVÁ, Yonas MEHERETU, Dagmar ČÍŽKOVÁ, Anna BRYJOVÁ, Herwig LEIRS a Josef BRYJA. Complete genome characterisation and phylogenetic position of Tigray hantavirus from the Ethiopian white-footed mouse, Stenocephalemys albipes. Infection, Genetics and Evolution. Amsterdam: Elsevier Science, 2016, roč. 45, November, s. 242-245. ISSN 1567-1348. Dostupné z: https://dx.doi.org/10.1016/j.meegid.2016.09.009.

@article{1355845,
   author = {Goüy de Bellocq, Joëlle and Těšíková, Jana and Meheretu, Yonas and Čížková, Dagmar and Bryjová, Anna and Leirs, Herwig and Bryja, Josef},
   article_location = {Amsterdam},
   article_number = {November},
   doi = {http://dx.doi.org/10.1016/j.meegid.2016.09.009},
   keywords = {Hantavirus; Murinae; Ethiopia; High throughput sequencing; Genomics},
   language = {eng},
   issn = {1567-1348},
   journal = {Infection, Genetics and Evolution},
   title = {Complete genome characterisation and phylogenetic position of Tigray hantavirus from the Ethiopian white-footed mouse, Stenocephalemys albipes},
   volume = {45},
   year = {2016}
}

TY  - JOUR
ID  - 1355845
AU  - Goüy de Bellocq, Joëlle - Těšíková, Jana - Meheretu, Yonas - Čížková, Dagmar - Bryjová, Anna - Leirs, Herwig - Bryja, Josef
PY  - 2016
TI  - Complete genome characterisation and phylogenetic position of Tigray hantavirus from the Ethiopian white-footed mouse, Stenocephalemys albipes
JF  - Infection, Genetics and Evolution
VL  - 45
IS  - November
SP  - 242-245
EP  - 242-245
PB  - Elsevier Science
SN  - 15671348
KW  - Hantavirus
KW  - Murinae
KW  - Ethiopia
KW  - High throughput sequencing
KW  - Genomics
N2  - Hantaviruses, well-known human pathogens, have only recently been identified on the African continent. Tigray virus (TIGV) was found in Ethiopia in 2012 in a Murinae species, Stenocephalemys albipes, but the genetic data obtained at that time were too limited to correctly assess its phylogenetic position within the hantavirus tree. We used high throughput sequencing to determine the complete genome of TIGV, which showed a typical hantavirus organisation. The large (L), medium (M), and small (S) genome segments were found to be 6532, 3594 and 1908 nucleotides long, respectively, and the 5' and 3' termini for all three segments were predicted to form the panhandle-like structure typical for bunyaviruses. Nucleotide-based phylogenetic analyses revealed that all three coding segments cluster in the phylogroup III sensu Guo et al. (2013). However, while TIGV S segment is basal to the Murinae-associated hantaviruses, the M and L segments are basal to the Soricomorpha-associated hantaviruses. TIGV is the first Murinae-borne hantavirus showing this inconsistent segmental clustering in the hantavirus phylogenetic tree. We finally propose non-exclusive scenarios that could explain the original phylogenetic position of TIGV. (C) 2016 Elsevier B.V. All rights reserved.
ER  -

GOÜY DE BELLOCQ, Jo$\backslash$''elle, Jana TĚŠÍKOVÁ, Yonas MEHERETU, Dagmar ČÍŽKOVÁ, Anna BRYJOVÁ, Herwig LEIRS a Josef BRYJA. Complete genome characterisation and phylogenetic position of Tigray hantavirus from the Ethiopian white-footed mouse, Stenocephalemys albipes. \textit{Infection, Genetics and Evolution}. Amsterdam: Elsevier Science, 2016, roč.~45, November, s.~242-245. ISSN~1567-1348. Dostupné z: https://dx.doi.org/10.1016/j.meegid.2016.09.009.

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