Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp.
nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus
sp. nov., isolated from the Antarctic environment

J 2017

Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment

ŠVEC, Pavel, Stanislava KRÁLOVÁ, Hans-Jürgen BUSSE, Tanita KLEINHAGAUER, Roman PANTŮČEK et. al.

Základní údaje

Originální název

Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment

Autoři

ŠVEC, Pavel (203 Česká republika, garant, domácí), Stanislava KRÁLOVÁ (703 Slovensko, domácí), Hans-Jürgen BUSSE (40 Rakousko), Tanita KLEINHAGAUER (40 Rakousko), Roman PANTŮČEK (203 Česká republika, domácí), Ivana MAŠLAŇOVÁ (203 Česká republika, domácí), Margo CNOCKAERT (56 Belgie), Peter VANDAMME (56 Belgie), Eva STAŇKOVÁ (203 Česká republika, domácí), Tereza GELBÍČOVÁ (203 Česká republika, domácí), Pavla HOLOCHOVÁ (203 Česká republika, domácí), Miloš BARTÁK (203 Česká republika, domácí), Kamila KÝROVÁ (203 Česká republika, domácí) a Ivo SEDLÁČEK (203 Česká republika, domácí)

Vydání

International Journal of Systematic and Evolutionary Microbiology, London, Society for General Microbiology, 2017, 1466-5026

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10606 Microbiology

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 1.932

Kód RIV

RIV/00216224:14310/17:00096919

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1099/ijsem.0.001749

UT WoS

000403696100060

Klíčová slova anglicky

Pedobacter jamesrossensis sp nov.; Pedobacter lithocola sp nov.; Pedobacter mendelii sp nov.; Pedobacter petrophilus sp nov.; James Ross Island; Antarctica

Štítky

NZ, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 10. 4. 2018 14:41, Ing. Nicole Zrilić

Anotace

V originále

A taxonomic study performed on 17 Gram-stain-negative rod-shaped bacterial strains originating from the Antarctic environment is described. Initial phylogenetic analysis using 16S rRNA gene sequencing differentiated the strains into four groups belonging to the genus Pedobacter but they were separated from all hitherto described Pedobacter species. Group I (n=8) was closest to Pedobacter aquatilis (97.8% 16S rRNA gene sequence similarity). Group II (n=2) and group III (n=4) were closely related (98.8% 16S rRNA gene sequence similarity) and had Pedobacter jejuensis as their common nearest neighbour. Group IV (n=3) was distantly delineated from the remaining Pedobacter species. Differentiation of the analysed strains into four clusters was further confirmed by repetitive sequence-based PCR fingerprinting, ribotyping, DNA–DNA hybridization and phenotypic traits. Common to representative strains for the four groups were the presence of major menaquinone MK-7, sym-homospermidine as the major polyamine, phosphatidylethanolamine, two unidentified lipids (L2, L5) and an unidentified aminolipid (AL2) as the major polar lipids, presence of an alkali-stable lipid, and C16:1omega7c/C16:1omega6c (summed feature 3), iso-C15:0 and iso-C 17:0 3-OH as the major fatty acids, which corresponded to characteristics of the genus Pedobacter. The obtained results showed that the strains analysed represent four novel species of the genus Pedobacter, for which the names Pedobacter jamesrossensis sp. nov. (type strain CCM 8689T=LMG 29684T), Pedobacter lithocola sp. nov. (CCM 8691T=LMG 29685T), Pedobacter mendelii sp. nov. (CCM 8685T=LMG 29688T) and Pedobacter petrophilus sp. nov. (CCM 8687T=LMG 29686T) are proposed.

Návaznosti

LM2015078, projekt VaV

Název: Česká polární výzkumná infrastruktura (Akronym: CzechPolar2)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Czech Polar Research Infrastructure

Přiložené soubory

1499_ijsem001749.pdf

Požádat o autorskou verzi souboru

Citovat

ŠVEC, Pavel, Stanislava KRÁLOVÁ, Hans-Jürgen BUSSE, Tanita KLEINHAGAUER, Roman PANTŮČEK, Ivana MAŠLAŇOVÁ, Margo CNOCKAERT, Peter VANDAMME, Eva STAŇKOVÁ, Tereza GELBÍČOVÁ, Pavla HOLOCHOVÁ, Miloš BARTÁK, Kamila KÝROVÁ a Ivo SEDLÁČEK. Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment. International Journal of Systematic and Evolutionary Microbiology. London: Society for General Microbiology, 2017, roč. 67, č. 5, s. 1499-1507. ISSN 1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijsem.0.001749.

@article{1382609,
   author = {Švec, Pavel and Králová, Stanislava and Busse, HansandJürgen and Kleinhagauer, Tanita and Pantůček, Roman and Mašlaňová, Ivana and Cnockaert, Margo and Vandamme, Peter and Staňková, Eva and Gelbíčová, Tereza and Holochová, Pavla and Barták, Miloš and Kýrová, Kamila and Sedláček, Ivo},
   article_location = {London},
   article_number = {5},
   doi = {http://dx.doi.org/10.1099/ijsem.0.001749},
   keywords = {Pedobacter jamesrossensis sp nov.; Pedobacter lithocola sp nov.; Pedobacter mendelii sp nov.; Pedobacter petrophilus sp nov.; James Ross Island; Antarctica},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of Systematic and Evolutionary Microbiology},
   title = {Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment},
   url = {http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.001749},
   volume = {67},
   year = {2017}
}

TY  - JOUR
ID  - 1382609
AU  - Švec, Pavel - Králová, Stanislava - Busse, Hans-Jürgen - Kleinhagauer, Tanita - Pantůček, Roman - Mašlaňová, Ivana - Cnockaert, Margo - Vandamme, Peter - Staňková, Eva - Gelbíčová, Tereza - Holochová, Pavla - Barták, Miloš - Kýrová, Kamila - Sedláček, Ivo
PY  - 2017
TI  - Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment
JF  - International Journal of Systematic and Evolutionary Microbiology
VL  - 67
IS  - 5
SP  - 1499-1507
EP  - 1499-1507
PB  - Society for General Microbiology
SN  - 14665026
KW  - Pedobacter jamesrossensis sp nov.
KW  - Pedobacter lithocola sp nov.
KW  - Pedobacter mendelii sp nov.
KW  - Pedobacter petrophilus sp nov.
KW  - James Ross Island
KW  - Antarctica
UR  - http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.001749
L2  - http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.001749
N2  - A taxonomic study performed on 17 Gram-stain-negative rod-shaped bacterial strains originating from the Antarctic environment is described. Initial phylogenetic analysis using 16S rRNA gene sequencing differentiated the strains into four groups belonging to the genus Pedobacter but they were separated from all hitherto described Pedobacter species. Group I (n=8) was closest to Pedobacter aquatilis (97.8% 16S rRNA gene sequence similarity). Group II (n=2) and group III (n=4) were closely related (98.8% 16S rRNA gene sequence similarity) and had Pedobacter jejuensis as their common nearest neighbour. Group IV (n=3) was distantly delineated from the remaining Pedobacter species. Differentiation of the analysed strains into four clusters was further confirmed by repetitive sequence-based PCR fingerprinting, ribotyping, DNA–DNA hybridization and phenotypic traits. Common to representative strains for the four groups were the presence of major menaquinone MK-7, sym-homospermidine as the major polyamine, phosphatidylethanolamine, two unidentified lipids (L2, L5) and an unidentified aminolipid (AL2) as the major polar lipids, presence of an alkali-stable lipid, and C16:1omega7c/C16:1omega6c (summed feature 3), iso-C15:0 and iso-C 17:0 3-OH as the major fatty acids, which corresponded to characteristics of the genus Pedobacter. The obtained results showed that the strains analysed represent four novel species of the genus Pedobacter, for which the names Pedobacter jamesrossensis sp. nov. (type strain CCM 8689T=LMG 29684T), Pedobacter lithocola sp. nov. (CCM 8691T=LMG 29685T), Pedobacter mendelii sp. nov. (CCM 8685T=LMG 29688T) and Pedobacter petrophilus sp. nov. (CCM 8687T=LMG 29686T) are proposed.
ER  -

ŠVEC, Pavel, Stanislava KRÁLOVÁ, Hans-Jürgen BUSSE, Tanita KLEINHAGAUER, Roman PANTŮČEK, Ivana MAŠLAŇOVÁ, Margo CNOCKAERT, Peter VANDAMME, Eva STAŇKOVÁ, Tereza GELBÍČOVÁ, Pavla HOLOCHOVÁ, Miloš BARTÁK, Kamila KÝROVÁ a Ivo SEDLÁČEK. Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment. \textit{International Journal of Systematic and Evolutionary Microbiology}. London: Society for General Microbiology, 2017, roč.~67, č.~5, s.~1499-1507. ISSN~1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijsem.0.001749.

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