Monophyletic Origin and Evolution of the Largest Crucifer
Genomes

J 2017

Monophyletic Origin and Evolution of the Largest Crucifer Genomes

MANDÁKOVÁ, Terezie, Petra HLOUŠKOVÁ, Dmitry A. GERMAN a Martin LYSÁK

Základní údaje

Originální název

Monophyletic Origin and Evolution of the Largest Crucifer Genomes

Autoři

MANDÁKOVÁ, Terezie (203 Česká republika, domácí), Petra HLOUŠKOVÁ (203 Česká republika, domácí), Dmitry A. GERMAN (276 Německo) a Martin LYSÁK (203 Česká republika, garant, domácí)

Vydání

Plant Physiology, Rockville (USA), American Society of Plant Physiologists, 2017, 0032-0889

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10611 Plant sciences, botany

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 5.949

Kód RIV

RIV/00216224:14740/17:00095153

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.1104/pp.17.00457

UT WoS

000406865900010

Klíčová slova anglicky

BRASSICACEAE PHYLOGENY; ARABIDOPSIS-THALIANA; MOLECULAR PHYLOGENY; SEQUENCE DATA; HISTORY; BLOCKS; PLANTS; GENES

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 1. 3. 2018 14:33, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

Clade E, or the Hesperis clade, is one of the major Brassicaceae (Crucifereae) clades, comprising some 48 genera and 351 species classified into seven tribes and is distributed predominantly across arid and montane regions of Asia. Several taxa have socioeconomic significance, being important ornamental but also weedy and invasive species. From the comparative genomic perspective, the clade is noteworthy as it harbors species with the largest crucifer genomes but low numbers of chromosomes (n = 5-7). By applying comparative cytogenetic analysis and whole-chloroplast phylogenetics, we constructed, to our knowledge, the first partial and complete cytogenetic maps for selected representatives of clade E tribes and investigated their relationships in a family-wide context. The Hesperis clade is a well-supported monophyletic lineage comprising seven tribes: Anchonieae, Buniadeae, Chorisporeae, Dontostemoneae, Euclidieae, Hesperideae, and Shehbazieae. The clade diverged from other Brassicaceae crown-group clades during the Oligocene, followed by subsequent Miocene tribal diversifications in central/southwestern Asia. The inferred ancestral karyotype of clade E (CEK; n = 7) originated from an older n = 8 genome, which also was the purported progenitor of tribe Arabideae (KAA genome). In most taxa of clade E, the seven linkage groups of CEK either remained conserved (Chorisporeae) or were reshuffled by chromosomal translocations (Euclidieae). In 50% of Anchonieae and Hesperideae species, the CEK genome has undergone descending dysploidy toward n = 6 (-5). These genomic data elucidate early genome evolution in Brassicaceae and pave the way for future whole-genome sequencing and assembly efforts in this as yet genomically neglected group of crucifer plants.

Návaznosti

GBP501/12/G090, projekt VaV

Název: Evoluce a funkce komplexních genomů rostlin

LQ1601, projekt VaV

Název: CEITEC 2020 (Akronym: CEITEC2020)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, CEITEC 2020

Citovat

MANDÁKOVÁ, Terezie, Petra HLOUŠKOVÁ, Dmitry A. GERMAN a Martin LYSÁK. Monophyletic Origin and Evolution of the Largest Crucifer Genomes. Plant Physiology. Rockville (USA): American Society of Plant Physiologists, 2017, roč. 174, č. 4, s. 2062-2071. ISSN 0032-0889. Dostupné z: https://dx.doi.org/10.1104/pp.17.00457.

@article{1395009,
   author = {Mandáková, Terezie and Hloušková, Petra and German, Dmitry A. and Lysák, Martin},
   article_location = {Rockville (USA)},
   article_number = {4},
   doi = {http://dx.doi.org/10.1104/pp.17.00457},
   keywords = {BRASSICACEAE PHYLOGENY; ARABIDOPSIS-THALIANA; MOLECULAR PHYLOGENY; SEQUENCE DATA; HISTORY; BLOCKS; PLANTS; GENES},
   language = {eng},
   issn = {0032-0889},
   journal = {Plant Physiology},
   title = {Monophyletic Origin and Evolution of the Largest Crucifer Genomes},
   url = {http://www.plantphysiol.org/content/174/4/2062},
   volume = {174},
   year = {2017}
}

TY  - JOUR
ID  - 1395009
AU  - Mandáková, Terezie - Hloušková, Petra - German, Dmitry A. - Lysák, Martin
PY  - 2017
TI  - Monophyletic Origin and Evolution of the Largest Crucifer Genomes
JF  - Plant Physiology
VL  - 174
IS  - 4
SP  - 2062-2071
EP  - 2062-2071
PB  - American Society of Plant Physiologists
SN  - 00320889
KW  - BRASSICACEAE PHYLOGENY
KW  - ARABIDOPSIS-THALIANA
KW  - MOLECULAR PHYLOGENY
KW  - SEQUENCE DATA
KW  - HISTORY
KW  - BLOCKS
KW  - PLANTS
KW  - GENES
UR  - http://www.plantphysiol.org/content/174/4/2062
L2  - http://www.plantphysiol.org/content/174/4/2062
N2  - Clade E, or the Hesperis clade, is one of the major Brassicaceae (Crucifereae) clades, comprising some 48 genera and 351 species classified into seven tribes and is distributed predominantly across arid and montane regions of Asia. Several taxa have socioeconomic significance, being important ornamental but also weedy and invasive species. From the comparative genomic perspective, the clade is noteworthy as it harbors species with the largest crucifer genomes but low numbers of chromosomes (n = 5-7). By applying comparative cytogenetic analysis and whole-chloroplast phylogenetics, we constructed, to our knowledge, the first partial and complete cytogenetic maps for selected representatives of clade E tribes and investigated their relationships in a family-wide context. The Hesperis clade is a well-supported monophyletic lineage comprising seven tribes: Anchonieae, Buniadeae, Chorisporeae, Dontostemoneae, Euclidieae, Hesperideae, and Shehbazieae. The clade diverged from other Brassicaceae crown-group clades during the Oligocene, followed by subsequent Miocene tribal diversifications in central/southwestern Asia. The inferred ancestral karyotype of clade E (CEK; n = 7) originated from an older n = 8 genome, which also was the purported progenitor of tribe Arabideae (KAA genome). In most taxa of clade E, the seven linkage groups of CEK either remained conserved (Chorisporeae) or were reshuffled by chromosomal translocations (Euclidieae). In 50% of Anchonieae and Hesperideae species, the CEK genome has undergone descending dysploidy toward n = 6 (-5). These genomic data elucidate early genome evolution in Brassicaceae and pave the way for future whole-genome sequencing and assembly efforts in this as yet genomically neglected group of crucifer plants.
ER  -

MANDÁKOVÁ, Terezie, Petra HLOUŠKOVÁ, Dmitry A. GERMAN a Martin LYSÁK. Monophyletic Origin and Evolution of the Largest Crucifer Genomes. \textit{Plant Physiology}. Rockville (USA): American Society of Plant Physiologists, 2017, roč.~174, č.~4, s.~2062-2071. ISSN~0032-0889. Dostupné z: https://dx.doi.org/10.1104/pp.17.00457.

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