PANG, Chao, Fleur KELPIN, David VAN ENCKEVORT, Niina EKLUND, Kaisa SILANDER, Dennis HENDRIKSEN, Mark DE HAAN, Jonathan JETTEN, Tommy DE BOER, Bart CHARBON, Petr HOLUB, Hans HILLEGE a Morris A. SWERTZ. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinformatics. Oxford: Oxford University Press, 2017, roč. 33, č. 22, s. 3627-3634. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btx478. |
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@article{1401920, author = {Pang, Chao and Kelpin, Fleur and van Enckevort, David and Eklund, Niina and Silander, Kaisa and Hendriksen, Dennis and de Haan, Mark and Jetten, Jonathan and de Boer, Tommy and Charbon, Bart and Holub, Petr and Hillege, Hans and Swertz, Morris A.}, article_location = {Oxford}, article_number = {22}, doi = {http://dx.doi.org/10.1093/bioinformatics/btx478}, language = {eng}, issn = {1367-4803}, journal = {Bioinformatics}, title = {BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration}, url = {http://dx.doi.org/10.1093/bioinformatics/btx478}, volume = {33}, year = {2017} }
TY - JOUR ID - 1401920 AU - Pang, Chao - Kelpin, Fleur - van Enckevort, David - Eklund, Niina - Silander, Kaisa - Hendriksen, Dennis - de Haan, Mark - Jetten, Jonathan - de Boer, Tommy - Charbon, Bart - Holub, Petr - Hillege, Hans - Swertz, Morris A. PY - 2017 TI - BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration JF - Bioinformatics VL - 33 IS - 22 SP - 3627-3634 EP - 3627-3634 PB - Oxford University Press SN - 13674803 UR - http://dx.doi.org/10.1093/bioinformatics/btx478 L2 - http://dx.doi.org/10.1093/bioinformatics/btx478 N2 - Biobanks are indispensable for large-scale genetic/epidemiological studies, yet it remains difficult for researchers to determine which biobanks contain data matching their research questions. To overcome this, we developed a new matching algorithm that identifies pairs of related data elements between biobanks and research variables with high precision and recall. It integrates lexical comparison, Unified Medical Language System ontology tagging and semantic query expansion. The result is BiobankUniverse, a fast matchmaking service for biobanks and researchers. Biobankers upload their data elements and researchers their desired study variables, BiobankUniverse automatically shortlists matching attributes between them. Users can quickly explore matching potential and search for biobanks/data elements matching their research. They can also curate matches and define personalized data-universes. ER -
PANG, Chao, Fleur KELPIN, David VAN ENCKEVORT, Niina EKLUND, Kaisa SILANDER, Dennis HENDRIKSEN, Mark DE HAAN, Jonathan JETTEN, Tommy DE BOER, Bart CHARBON, Petr HOLUB, Hans HILLEGE a Morris A. SWERTZ. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. \textit{Bioinformatics}. Oxford: Oxford University Press, 2017, roč.~33, č.~22, s.~3627-3634. ISSN~1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btx478.
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