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@article{1403068, author = {Mazurenko, Stanislav and Kunka, Antonín and Beerens, Koen and Johnson, Christopher M. and Damborský, Jiří and Prokop, Zbyněk}, article_location = {London}, article_number = {November}, doi = {http://dx.doi.org/10.1038/s41598-017-16360-y}, keywords = {DIFFERENTIAL SCANNING CALORIMETRY; THERMAL-DENATURATION; THEORETICAL-ANALYSIS; AGGREGATION; STABILITY; LYSOZYME; STABILIZATION; SPECTROSCOPY; TRANSITIONS; PROFILES}, language = {eng}, issn = {2045-2322}, journal = {Scientific Reports}, title = {Exploration of Protein Unfolding by Modelling Calorimetry Data from Reheating}, url = {https://loschmidt.chemi.muni.cz/peg/publications/exploration-of-protein-unfolding-by-modelling-calorimetry-data-from-reheating/}, volume = {7}, year = {2017} }
TY - JOUR ID - 1403068 AU - Mazurenko, Stanislav - Kunka, Antonín - Beerens, Koen - Johnson, Christopher M. - Damborský, Jiří - Prokop, Zbyněk PY - 2017 TI - Exploration of Protein Unfolding by Modelling Calorimetry Data from Reheating JF - Scientific Reports VL - 7 IS - November SP - nestránkováno EP - nestránkováno PB - NATURE PUBLISHING GROUP SN - 20452322 KW - DIFFERENTIAL SCANNING CALORIMETRY KW - THERMAL-DENATURATION KW - THEORETICAL-ANALYSIS KW - AGGREGATION KW - STABILITY KW - LYSOZYME KW - STABILIZATION KW - SPECTROSCOPY KW - TRANSITIONS KW - PROFILES UR - https://loschmidt.chemi.muni.cz/peg/publications/exploration-of-protein-unfolding-by-modelling-calorimetry-data-from-reheating/ N2 - Studies of protein unfolding mechanisms are critical for understanding protein functions inside cells, de novo protein design as well as defining the role of protein misfolding in neurodegenerative disorders. Calorimetry has proven indispensable in this regard for recording full energetic profiles of protein unfolding and permitting data fitting based on unfolding pathway models. While both kinetic and thermodynamic protein stability are analysed by varying scan rates and reheating, the latter is rarely used in curve-fitting, leading to a significant loss of information from experiments. To extract this information, we propose fitting both first and second scans simultaneously. Four most common single-peak transition models are considered: (i) fully reversible, (ii) fully irreversible, (iii) partially reversible transitions, and (iv) general three-state models. The method is validated using calorimetry data for chicken egg lysozyme, mutated Protein A, three wild-types of haloalkane dehalogenases, and a mutant stabilized by protein engineering. We show that modelling of reheating increases the precision of determination of unfolding mechanisms, free energies, temperatures, and heat capacity differences. Moreover, this modelling indicates whether alternative refolding pathways might occur upon cooling. The Matlab-based data fitting software tool and its user guide are provided as a supplement. ER -
MAZURENKO, Stanislav, Antonín KUNKA, Koen BEERENS, Christopher M. JOHNSON, Jiří DAMBORSKÝ a Zbyněk PROKOP. Exploration of Protein Unfolding by Modelling Calorimetry Data from Reheating. \textit{Scientific Reports}. London: NATURE PUBLISHING GROUP, 2017, roč.~7, November, s.~nestránkováno, 14 s. ISSN~2045-2322. Dostupné z: https://dx.doi.org/10.1038/s41598-017-16360-y.
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