Structure and properties of heavy-metal binding protein from
Agaricus bisporus. A case study on utilizing X-ray
crystallography and different biophysical techniques for
elucidating protein function

a 2017

Structure and properties of heavy-metal binding protein from Agaricus bisporus. A case study on utilizing X-ray crystallography and different biophysical techniques for elucidating protein function

KOMÁREK, Jan, Eva KAVKOVÁ, Josef HOUSER, Aneta HORÁČKOVÁ, Jitka ŽDÁNSKÁ et. al.

Základní údaje

Originální název

Structure and properties of heavy-metal binding protein from Agaricus bisporus. A case study on utilizing X-ray crystallography and different biophysical techniques for elucidating protein function

Autoři

KOMÁREK, Jan, Eva KAVKOVÁ, Josef HOUSER, Aneta HORÁČKOVÁ, Jitka ŽDÁNSKÁ a Michaela WIMMEROVÁ

Vydání

23rd International Analytical Ultracentrifugation Workshop and Symposium, 2017

Další údaje

Jazyk

angličtina

Typ výsledku

Konferenční abstrakt

Obor

10600 1.6 Biological sciences

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Organizační jednotka

Středoevropský technologický institut

Klíčová slova anglicky

metal-binding proteins; Agaricus bisporus

Změněno: 24. 1. 2018 09:32, Mgr. Jan Komárek, Ph.D.

Anotace

V originále

The white button mushroom Agaricus bisporus is one of the most widely cultivated mushrooms in the world and an important component of human diet. Apart from its high nutritional value, it has a significant ecological role (e.g. involvement in the decay of a leaf litter). Here we report the structure-functional characterization of 45 kDa dimeric protein from A. bisporus. The protein shares no detectable sequence homology to any protein of known function and it is the first characterized member of the protein family. The cDNA sequence was amplified by the reverse transcription PCR and the protein was expressed in E. coli in a recombinant form. The X-ray structure was solved to a resolution of 1.6 A and it showed an elongated helical bundle structure with rather low structural similarity to other proteins. Using different biophysical techniques (AUC, CD, DSF) it was shown that the protein displays high thermostability and is stable over a wide range of pH. Finally, with DSC and ITC we identified and characterized its ability to bind divalent heavy metal ions (nickel, zinc, cadmium and cobalt), which might suggest its possible role in homeostasis, regulational pathways or sequestration and removal of heavy metals.

Návaznosti

CZ.02.1.01/0.0/0.0/16_013/0001776, interní kód MU
(Kód CEP: EF16_013/0001776)

Název: CIISB - Česká infrastruktura pro integrativní strukturní biologii pro lidské zdraví (Akronym: CIISB4HEALTH)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, CIISB - Česká infrastruktura pro integrativní strukturní biologii pro lidské zdraví, PO 1 Posilování kapacit pro kvalitní výzkum

Citovat

KOMÁREK, Jan, Eva KAVKOVÁ, Josef HOUSER, Aneta HORÁČKOVÁ, Jitka ŽDÁNSKÁ a Michaela WIMMEROVÁ. Structure and properties of heavy-metal binding protein from Agaricus bisporus. A case study on utilizing X-ray crystallography and different biophysical techniques for elucidating protein function. In 23rd International Analytical Ultracentrifugation Workshop and Symposium. 2017.

@proceedings{1404172,
   author = {Komárek, Jan and Kavková, Eva and Houser, Josef and Horáčková, Aneta and Ždánská, Jitka and Wimmerová, Michaela},
   booktitle = {23rd International Analytical Ultracentrifugation Workshop and Symposium},
   keywords = {metal-binding proteins; Agaricus bisporus},
   language = {eng},
   title = {Structure and properties of heavy-metal binding protein from Agaricus bisporus. A case study on utilizing X-ray crystallography and different biophysical techniques for elucidating protein function},
   year = {2017}
}

TY  - CONF
ID  - 1404172
AU  - Komárek, Jan - Kavková, Eva - Houser, Josef - Horáčková, Aneta - Ždánská, Jitka - Wimmerová, Michaela
PY  - 2017
TI  - Structure and properties of heavy-metal binding protein from Agaricus bisporus. A case study on utilizing X-ray crystallography and different biophysical techniques for elucidating protein function
KW  - metal-binding proteins
KW  - Agaricus bisporus
N2  - The white button mushroom Agaricus bisporus is one of the most widely cultivated mushrooms in the world and an important component of human diet. Apart from its high nutritional value, it has a significant ecological role (e.g. involvement in the decay of a leaf litter). Here we report the structure-functional characterization of 45 kDa dimeric protein from A. bisporus. The protein shares no detectable sequence homology to any protein of known function and it is the first characterized member of the protein family. The cDNA sequence was amplified by the reverse transcription PCR and the protein was expressed in E. coli in a recombinant form. The X-ray structure was solved to a resolution of 1.6 A and it showed an elongated helical bundle structure with rather low structural similarity to other proteins. Using different biophysical techniques (AUC, CD, DSF) it was shown that the protein displays high thermostability and is stable over a wide range of pH. Finally, with DSC and ITC we identified and characterized its ability to bind divalent heavy metal ions (nickel, zinc, cadmium and cobalt), which might suggest its possible role in homeostasis, regulational pathways or sequestration and removal of heavy metals.
ER  -

KOMÁREK, Jan, Eva KAVKOVÁ, Josef HOUSER, Aneta HORÁČKOVÁ, Jitka ŽDÁNSKÁ a Michaela WIMMEROVÁ. Structure and properties of heavy-metal binding protein from Agaricus bisporus. A case study on utilizing X-ray crystallography and different biophysical techniques for elucidating protein function. In \textit{23rd International Analytical Ultracentrifugation Workshop and Symposium}. 2017.

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