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@article{1404252, author = {Kotásková, Iva and Mališová, Barbora and Obručová, Hana and Holá, Veronika and Peroutková, Tereza and Růžička, Filip and Freiberger, Tomáš}, article_location = {Basel}, article_number = {6}, doi = {http://dx.doi.org/10.1159/000484524}, keywords = {Catheter; Complex sample; Mixed chromatogram; PCR denaturing gradient gel electrophoresis; RipSeq Mixed}, language = {eng}, issn = {1464-1801}, journal = {Journal of Molecular Microbiology and Biotechnology}, title = {Contribution of PCR Denaturing Gradient Gel Electrophoresis Combined with Mixed Chromatogram Software Separation for Complex Urinary Sample Analysis}, volume = {27}, year = {2017} }
TY - JOUR ID - 1404252 AU - Kotásková, Iva - Mališová, Barbora - Obručová, Hana - Holá, Veronika - Peroutková, Tereza - Růžička, Filip - Freiberger, Tomáš PY - 2017 TI - Contribution of PCR Denaturing Gradient Gel Electrophoresis Combined with Mixed Chromatogram Software Separation for Complex Urinary Sample Analysis JF - Journal of Molecular Microbiology and Biotechnology VL - 27 IS - 6 SP - 350-355 EP - 350-355 PB - Karger SN - 14641801 KW - Catheter KW - Complex sample KW - Mixed chromatogram KW - PCR denaturing gradient gel electrophoresis KW - RipSeq Mixed N2 - Complex samples are a challenge for sequencing-based broad-range diagnostics. We analysed 19 urinary catheter, ureteral Double-J catheter, and urine samples using 3 methodological approaches. Out of the total 84 operational taxonomic units, 37, 61, and 88% were identified by culture, PCR-DGGE-SS (PCR denaturing gradient gel electrophoresis followed by Sanger sequencing), and PCR-DGGE-RM (PCR- DGGE combined with software chromatogram separation by RipSeq Mixed tool), respectively. The latter approach was shown to be an efficient tool to complement culture in complex sample assessment. ER -
KOTÁSKOVÁ, Iva, Barbora MALIŠOVÁ, Hana OBRUČOVÁ, Veronika HOLÁ, Tereza PEROUTKOVÁ, Filip RŮŽIČKA a Tomáš FREIBERGER. Contribution of PCR Denaturing Gradient Gel Electrophoresis Combined with Mixed Chromatogram Software Separation for Complex Urinary Sample Analysis. \textit{Journal of Molecular Microbiology and Biotechnology}. Basel: Karger, 2017, roč.~27, č.~6, s.~350-355. ISSN~1464-1801. Dostupné z: https://dx.doi.org/10.1159/000484524.
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