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@proceedings{1409482,
author = {Suchánková, Pavla and Svobodová Vařeková, Radka},
booktitle = {XVIII. setkání biochemiků a molekulárních biologů, 2017},
keywords = {glycan; GlycoCT; InChI; InChIKey; PDB; PubChem; UnicarbKB},
language = {eng},
isbn = {978-80-210-8765-1},
title = {Connection of saccharide database UnicarbKb with common databases of molecular structures},
year = {2017}
}
TY - CONF
ID - 1409482
AU - Suchánková, Pavla - Svobodová Vařeková, Radka
PY - 2017
TI - Connection of saccharide database UnicarbKb with common databases of molecular structures
SN - 9788021087651
KW - glycan
KW - GlycoCT
KW - InChI
KW - InChIKey
KW - PDB
KW - PubChem
KW - UnicarbKB
N2 - Carbohydrates are important biomolecules, which play significant role in cell-cell recognition and other key biological processes. Thanks to high-performance structure determination methods, we have nowadays available a huge amount of biomolecular structures (including saccharides). These structures are archived in UnicarbKb [1] database, where they are stored in GlycoCT format [2] which was developed for describing of saccharide molecule. An important challenge of current glycobioinformatics is a connection of UnicarbKb with common databases of molecular structures (e.g., Pubchem [3]). We focused on this topic and developed a workflow for translation of GlycoCT format to SMILES and Inchi. Based on these standard formats, we established a linkage between Unicarb and Pubchem databases. We will present the workflow and also information describing a matching between these databases.
ER -
SUCHÁNKOVÁ, Pavla a Radka SVOBODOVÁ VAŘEKOVÁ. Connection of saccharide database UnicarbKb with common databases of molecular structures. In \textit{XVIII. setkání biochemiků a molekulárních biologů, 2017}. 2017. ISBN~978-80-210-8765-1.
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