The Aquilegia genome provides insight into adaptive radiation
and reveals an extraordinarily polymorphic chromosome with a
unique history

J 2018

The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history

FILIAULT, D.L., ES BALLERINI, Terezie MANDÁKOVÁ, G. AKOZ, N.J. DERIEG et. al.

Základní údaje

Originální název

The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history

Autoři

FILIAULT, D.L. (40 Rakousko), ES BALLERINI (840 Spojené státy), Terezie MANDÁKOVÁ (203 Česká republika, domácí), G. AKOZ (40 Rakousko), N.J. DERIEG (840 Spojené státy), J. SCHMUTZ (840 Spojené státy), J. JENKINS (840 Spojené státy), J. GRIMWOOD (840 Spojené státy), S.Q. SHU (840 Spojené státy), R.D. HAYES (840 Spojené státy), U. HELLSTEN (840 Spojené státy), K. BARRY (840 Spojené státy), J.Y. YAN (840 Spojené státy), S. MIHALTCHEVA (840 Spojené státy), M. KARAFIATOVA (203 Česká republika), V. NIZHYNSKA (40 Rakousko), E.M. KRAMER (840 Spojené státy), Martin LYSÁK (203 Česká republika, garant, domácí), S.A. HODGES (840 Spojené státy) a M. NORDBORG (40 Rakousko)

Vydání

elife, CAMBRIDGE, ELIFE SCIENCES PUBLICATIONS LTD, 2018, 2050-084X

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10611 Plant sciences, botany

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 7.551

Kód RIV

RIV/00216224:14740/18:00101417

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.7554/eLife.36426

UT WoS

000451109700001

Klíčová slova anglicky

DIFFERENTIAL EXPRESSION ANALYSIS; NUCLEAR-DNA AMOUNTS; INBREEDING DEPRESSION; PHYLOGENETIC ANALYSIS; SEX-CHROMOSOME; B CHROMOSOMES; GENE; EVOLUTION; HYBRIDIZATION; DUPLICATIONS

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 13. 3. 2019 17:07, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

The columbine genus Aquilegia is a classic example of an adaptive radiation, involving a wide variety of pollinators and habitats. Here we present the genome assembly of A. coerulea 'Goldsmith ', complemented by high-coverage sequencing data from 10 wild species covering the world-wide distribution. Our analyses reveal extensive allele sharing among species and demonstrate that introgression and selection played a role in the Aquilegia radiation. We also present the remarkable discovery that the evolutionary history of an entire chromosome differs from that of the rest of the genome - a phenomenon that we do not fully understand, but which highlights the need to consider chromosomes in an evolutionary context.

Návaznosti

GBP501/12/G090, projekt VaV

Název: Evoluce a funkce komplexních genomů rostlin

LQ1601, projekt VaV

Název: CEITEC 2020 (Akronym: CEITEC2020)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, CEITEC 2020

Citovat

FILIAULT, D.L., ES BALLERINI, Terezie MANDÁKOVÁ, G. AKOZ, N.J. DERIEG, J. SCHMUTZ, J. JENKINS, J. GRIMWOOD, S.Q. SHU, R.D. HAYES, U. HELLSTEN, K. BARRY, J.Y. YAN, S. MIHALTCHEVA, M. KARAFIATOVA, V. NIZHYNSKA, E.M. KRAMER, Martin LYSÁK, S.A. HODGES a M. NORDBORG. The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. elife. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2018, roč. 7, OCT, s. 36426-36456. ISSN 2050-084X. Dostupné z: https://dx.doi.org/10.7554/eLife.36426.

@article{1477217,
   author = {Filiault, D.L. and Ballerini, ES and Mandáková, Terezie and Akoz, G. and Derieg, N.J. and Schmutz, J. and Jenkins, J. and Grimwood, J. and Shu, S.Q. and Hayes, R.D. and Hellsten, U. and Barry, K. and Yan, J.Y. and Mihaltcheva, S. and Karafiatova, M. and Nizhynska, V. and Kramer, E.M. and Lysák, Martin and Hodges, S.A. and Nordborg, M.},
   article_location = {CAMBRIDGE},
   article_number = {OCT},
   doi = {http://dx.doi.org/10.7554/eLife.36426},
   keywords = {DIFFERENTIAL EXPRESSION ANALYSIS; NUCLEAR-DNA AMOUNTS; INBREEDING DEPRESSION; PHYLOGENETIC ANALYSIS; SEX-CHROMOSOME; B CHROMOSOMES; GENE; EVOLUTION; HYBRIDIZATION; DUPLICATIONS},
   language = {eng},
   issn = {2050-084X},
   journal = {elife},
   title = {The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history},
   url = {https://elifesciences.org/articles/36426},
   volume = {7},
   year = {2018}
}

TY  - JOUR
ID  - 1477217
AU  - Filiault, D.L. - Ballerini, ES - Mandáková, Terezie - Akoz, G. - Derieg, N.J. - Schmutz, J. - Jenkins, J. - Grimwood, J. - Shu, S.Q. - Hayes, R.D. - Hellsten, U. - Barry, K. - Yan, J.Y. - Mihaltcheva, S. - Karafiatova, M. - Nizhynska, V. - Kramer, E.M. - Lysák, Martin - Hodges, S.A. - Nordborg, M.
PY  - 2018
TI  - The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
JF  - elife
VL  - 7
IS  - OCT
SP  - 36426
EP  - 36426
PB  - ELIFE SCIENCES PUBLICATIONS LTD
SN  - 2050084X
KW  - DIFFERENTIAL EXPRESSION ANALYSIS
KW  - NUCLEAR-DNA AMOUNTS
KW  - INBREEDING DEPRESSION
KW  - PHYLOGENETIC ANALYSIS
KW  - SEX-CHROMOSOME
KW  - B CHROMOSOMES
KW  - GENE
KW  - EVOLUTION
KW  - HYBRIDIZATION
KW  - DUPLICATIONS
UR  - https://elifesciences.org/articles/36426
N2  - The columbine genus Aquilegia is a classic example of an adaptive radiation, involving a wide variety of pollinators and habitats. Here we present the genome assembly of A. coerulea 'Goldsmith ', complemented by high-coverage sequencing data from 10 wild species covering the world-wide distribution. Our analyses reveal extensive allele sharing among species and demonstrate that introgression and selection played a role in the Aquilegia radiation. We also present the remarkable discovery that the evolutionary history of an entire chromosome differs from that of the rest of the genome - a phenomenon that we do not fully understand, but which highlights the need to consider chromosomes in an evolutionary context.
ER  -

FILIAULT, D.L., ES BALLERINI, Terezie MANDÁKOVÁ, G. AKOZ, N.J. DERIEG, J. SCHMUTZ, J. JENKINS, J. GRIMWOOD, S.Q. SHU, R.D. HAYES, U. HELLSTEN, K. BARRY, J.Y. YAN, S. MIHALTCHEVA, M. KARAFIATOVA, V. NIZHYNSKA, E.M. KRAMER, Martin LYSÁK, S.A. HODGES a M. NORDBORG. The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. \textit{elife}. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2018, roč.~7, OCT, s.~36426-36456. ISSN~2050-084X. Dostupné z: https://dx.doi.org/10.7554/eLife.36426.

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