J 2018

Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana

CAPITAO, C.; Neha SHUKLA; Aneta WANDROLOVÁ; O.M. SCHEID; Karel ŘÍHA et. al.

Basic information

Original name

Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana

Authors

CAPITAO, C. (40 Austria); Neha SHUKLA (356 India, belonging to the institution); Aneta WANDROLOVÁ (203 Czech Republic, belonging to the institution); O.M. SCHEID (40 Austria) and Karel ŘÍHA (203 Czech Republic, guarantor, belonging to the institution)

Edition

Frontiers in Plant Science, Lausanne (Switzerland), Frontiers Media SA, 2018, 1664-462X

Other information

Language

English

Type of outcome

Article in a journal

Field of Study

10611 Plant sciences, botany

Country of publisher

Switzerland

Confidentiality degree

is not subject to a state or trade secret

Impact factor

Impact factor: 4.106

RIV identification code

RIV/00216224:14740/18:00101791

Organization unit

Central European Institute of Technology

UT WoS

000449282400001

EID Scopus

2-s2.0-85058818249

Keywords in English

nonsense mediated RNA decay; meiosis; SMG7; gene duplication; Arabidopsis

Tags

Tags

International impact, Reviewed
Changed: 19/3/2019 14:38, Mgr. Pavla Foltynová, Ph.D.

Abstract

In the original language

SMG7 proteins are evolutionary conserved across eukaryotes and primarily known for their function in nonsense mediated RNA decay (NMD). In contrast to other NMD factors, SMG7 proteins underwent independent expansions during evolution indicating their propensity to adopt novel functions. Here we characterized SMG7 and SMG7-like (SMG7L) paralogs in Arabidopsis thaliana. SMG7 retained its role in NMD and additionally appears to have acquired another function in meiosis. We inactivated SMG7 by CRISPR/Cas9 mutagenesis and showed that, in contrast to our previous report, SMG7 is not an essential gene in Arabidopsis. Furthermore, our data indicate that the N-terminal phosphoserine-binding domain is required for both NMD and meiosis. Phenotypic analysis of SMG7 and SMG7L double mutants did not indicate any functional redundancy between the two genes, suggesting neofunctionalization of SMG7L. Finally, protein sequence comparison together with a phenotyping of T-DNA insertion mutants identified several conserved regions specific for SMG7 that may underlie its role in NMD and meiosis. This information provides a framework for deciphering the non-canonical functions of SMG7-family proteins.

Links

EF15_003/0000479, research and development project
Name: Regulace rostlinné meiózy
GA16-18578S, research and development project
Name: Funkce UPF1 helikázy v procesech odehrávajících se v buněčném jádře
Investor: Czech Science Foundation