2018
Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana
CAPITAO, C.; Neha SHUKLA; Aneta WANDROLOVÁ; O.M. SCHEID; Karel ŘÍHA et. al.Basic information
Original name
Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana
Authors
CAPITAO, C. (40 Austria); Neha SHUKLA (356 India, belonging to the institution); Aneta WANDROLOVÁ (203 Czech Republic, belonging to the institution); O.M. SCHEID (40 Austria) and Karel ŘÍHA (203 Czech Republic, guarantor, belonging to the institution)
Edition
Frontiers in Plant Science, Lausanne (Switzerland), Frontiers Media SA, 2018, 1664-462X
Other information
Language
English
Type of outcome
Article in a journal
Field of Study
10611 Plant sciences, botany
Country of publisher
Switzerland
Confidentiality degree
is not subject to a state or trade secret
Impact factor
Impact factor: 4.106
RIV identification code
RIV/00216224:14740/18:00101791
Organization unit
Central European Institute of Technology
UT WoS
000449282400001
EID Scopus
2-s2.0-85058818249
Keywords in English
nonsense mediated RNA decay; meiosis; SMG7; gene duplication; Arabidopsis
Tags
Tags
International impact, Reviewed
Changed: 19/3/2019 14:38, Mgr. Pavla Foltynová, Ph.D.
Abstract
In the original language
SMG7 proteins are evolutionary conserved across eukaryotes and primarily known for their function in nonsense mediated RNA decay (NMD). In contrast to other NMD factors, SMG7 proteins underwent independent expansions during evolution indicating their propensity to adopt novel functions. Here we characterized SMG7 and SMG7-like (SMG7L) paralogs in Arabidopsis thaliana. SMG7 retained its role in NMD and additionally appears to have acquired another function in meiosis. We inactivated SMG7 by CRISPR/Cas9 mutagenesis and showed that, in contrast to our previous report, SMG7 is not an essential gene in Arabidopsis. Furthermore, our data indicate that the N-terminal phosphoserine-binding domain is required for both NMD and meiosis. Phenotypic analysis of SMG7 and SMG7L double mutants did not indicate any functional redundancy between the two genes, suggesting neofunctionalization of SMG7L. Finally, protein sequence comparison together with a phenotyping of T-DNA insertion mutants identified several conserved regions specific for SMG7 that may underlie its role in NMD and meiosis. This information provides a framework for deciphering the non-canonical functions of SMG7-family proteins.
Links
EF15_003/0000479, research and development project |
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GA16-18578S, research and development project |
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