DOUBKOVÁ, Martina, Kateřina STAŇO KOZUBÍK, Lenka RADOVÁ, Michaela PEŠOVÁ, Jakub TRIZULJAK, Karol PÁL, Klára SVOBODOVÁ, Kamila RÉBLOVÁ, Hana SVOZILOVÁ, Zuzana VRZALOVÁ, Šárka POSPÍŠILOVÁ and Michael DOUBEK. A novel germline mutation of the SFTPA1 gene in familial interstitial pneumonia. HUMAN GENOME VARIATION. LONDON: NATURE PUBLISHING GROUP, 2019, vol. 6, MAR, p. nestrankovano, 6 pp. ISSN 2054-345X. Available from: https://dx.doi.org/10.1038/s41439-019-0044-z.
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Basic information
Original name A novel germline mutation of the SFTPA1 gene in familial interstitial pneumonia
Authors DOUBKOVÁ, Martina (203 Czech Republic, belonging to the institution), Kateřina STAŇO KOZUBÍK (203 Czech Republic, belonging to the institution), Lenka RADOVÁ (203 Czech Republic, belonging to the institution), Michaela PEŠOVÁ (203 Czech Republic, belonging to the institution), Jakub TRIZULJAK (703 Slovakia, belonging to the institution), Karol PÁL (703 Slovakia, belonging to the institution), Klára SVOBODOVÁ (203 Czech Republic), Kamila RÉBLOVÁ (203 Czech Republic, belonging to the institution), Hana SVOZILOVÁ (203 Czech Republic, belonging to the institution), Zuzana VRZALOVÁ (203 Czech Republic, belonging to the institution), Šárka POSPÍŠILOVÁ (203 Czech Republic, guarantor, belonging to the institution) and Michael DOUBEK (203 Czech Republic, belonging to the institution).
Edition HUMAN GENOME VARIATION, LONDON, NATURE PUBLISHING GROUP, 2019, 2054-345X.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 30101 Human genetics
Country of publisher United Kingdom of Great Britain and Northern Ireland
Confidentiality degree is not subject to a state or trade secret
WWW URL
RIV identification code RIV/00216224:14740/19:00108481
Organization unit Central European Institute of Technology
Doi http://dx.doi.org/10.1038/s41439-019-0044-z
UT WoS 000468803900001
Keywords in English IDIOPATHIC PULMONARY-FIBROSIS; SURFACTANT PROTEIN-A; LUNG-DISEASE; PATHOLOGICAL FEATURES; RTEL1; DIAGNOSIS; VARIANTS; UPDATE; ABCA3
Tags 14110212, 14110215, CF GEN, podil, rivok
Tags International impact, Reviewed
Changed by Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 31/3/2020 21:09.
Abstract
Different genes related to alveolar stability have been associated with familial interstitial pneumonia (FIP). Here, we report a novel, rare SFTPA1 variant in a family with idiopathic interstitial pneumonia (IIP). We performed whole-exome sequencing on germline DNA samples from four members of one family; three of them showed signs of pulmonary fibrosis (idiopathic interstitial pneumonia) with autosomal-dominant inheritance. A heterozygous single nucleotide variant c.532 G > A in the SFTPA1 gene has been identified. This variant encodes the substitution p.(Val178Met), localized within the carbohydrate recognition domain of surfactant protein A and segregates with the genes causing idiopathic interstitial pneumonia. This rare variant has not been previously reported. We also analyzed the detected sequence variant in the protein structure in silica The replacement of valine by the larger methionine inside the protein may cause a disruption in the protein structure. The c.532 G > A variant was further validated using Sanger sequencing of the amplicons, confirming the diagnosis in all symptomatic family members. Moreover, this variant was also found by Sanger sequencing in one other symptomatic family member and one young asymptomatic family member. The autosomal-dominant inheritance, the family history of IIP, and the evidence of a mutation occurring in part of the SFTPA1 gene all suggest a novel variant that causes FIP.
Links
LM2015091, research and development projectName: Národní centrum lékařské genomiky (Acronym: NCLG)
Investor: Ministry of Education, Youth and Sports of the CR
LQ1601, research and development projectName: CEITEC 2020 (Acronym: CEITEC2020)
Investor: Ministry of Education, Youth and Sports of the CR
NV16-29447A, research and development projectName: Vyhledávání mutací predisponujících k familiárním hematologickým a onkologickým onemocněním
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