ColPortal, an integrative multiomic platform for analysing
epigenetic interactions in colorectal cancer

J 2019

ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer

ESTEBAN-GIL, Angel, Fernando PEREZ-SANZ, Jose GARCIA-SOLANO, Begona ALBURQUERQUE-GONZALEZ, Maria PARRENO-GONZALEZ et. al.

Základní údaje

Originální název

ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer

Autoři

ESTEBAN-GIL, Angel (724 Španělsko, garant), Fernando PEREZ-SANZ (724 Španělsko), Jose GARCIA-SOLANO (724 Španělsko), Begona ALBURQUERQUE-GONZALEZ (724 Španělsko), Maria PARRENO-GONZALEZ (724 Španělsko), Maria del Carmen LEGAZ-GARCIA (724 Španělsko), Jesualdo Tomas FERNANDEZ-BREIS (724 Španělsko), Edith RODRIGUEZ-BRAUN (724 Španělsko), Paola PIMENTEL (724 Španělsko), Anne TUOMISTO (246 Finsko), Markus MAKINEN (246 Finsko), Ondřej SLABÝ (203 Česká republika, domácí) a Pablo CONESA-ZAMORA (724 Španělsko)

Vydání

SCIENTIFIC DATA, LONDON, NATURE PUBLISHING GROUP, 2019, 2052-4463

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

30204 Oncology

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 5.541

Kód RIV

RIV/00216224:14740/19:00112508

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.1038/s41597-019-0198-z

UT WoS

000494480700001

Klíčová slova anglicky

MICROSATELLITE INSTABILITY; PROMOTER HYPERMETHYLATION; SERRATED POLYPS; COLON-CANCER; PHENOTYPE; CARCINOGENESIS; ADENOCARCINOMA; BIOMARKERS; PATHWAYS; GENES

Štítky

14110811, podil, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 26. 2. 2020 12:38, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

Colorectal cancer (CRC) is the third leading cause of cancer mortality worldwide. Different pathological pathways and molecular drivers have been described and some of the associated markers are used to select effective anti-neoplastic therapy. More recent evidence points to a causal role of microbiota and altered microRNA expression in CRC carcinogenesis, but their relationship with pathological drivers or molecular phenotypes is not clearly established. Joint analysis of clinical and omics data can help clarify such relations. We present ColPortal, a platform that integrates transcriptomic, microtranscriptomic, methylomic and microbiota data of patients with colorectal cancer. ColPortal also includes detailed information of histological features and digital histological slides from the study cases, since histology is a morphological manifestation of a complex molecular change. The current cohort consists of Caucasian patients from Europe. For each patient, demographic information, location, histology, tumor staging, tissue prognostic factors, molecular biomarker status and clinical outcomes are integrated with omics data. ColPortal allows one to perform multiomics analyses for groups of patients selected by their clinical data.

Citovat

ESTEBAN-GIL, Angel, Fernando PEREZ-SANZ, Jose GARCIA-SOLANO, Begona ALBURQUERQUE-GONZALEZ, Maria PARRENO-GONZALEZ, Maria del Carmen LEGAZ-GARCIA, Jesualdo Tomas FERNANDEZ-BREIS, Edith RODRIGUEZ-BRAUN, Paola PIMENTEL, Anne TUOMISTO, Markus MAKINEN, Ondřej SLABÝ a Pablo CONESA-ZAMORA. ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer. SCIENTIFIC DATA. LONDON: NATURE PUBLISHING GROUP, 2019, roč. 6, OCT 31 2019, s. 1-14. ISSN 2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-019-0198-z.

@article{1605485,
   author = {EstebanandGil, Angel and PerezandSanz, Fernando and GarciaandSolano, Jose and AlburquerqueandGonzalez, Begona and ParrenoandGonzalez, Maria and LegazandGarcia, Maria del Carmen and FernandezandBreis, Jesualdo Tomas and RodriguezandBraun, Edith and Pimentel, Paola and Tuomisto, Anne and Makinen, Markus and Slabý, Ondřej and ConesaandZamora, Pablo},
   article_location = {LONDON},
   article_number = {OCT 31 2019},
   doi = {http://dx.doi.org/10.1038/s41597-019-0198-z},
   keywords = {MICROSATELLITE INSTABILITY; PROMOTER HYPERMETHYLATION; SERRATED POLYPS; COLON-CANCER; PHENOTYPE; CARCINOGENESIS; ADENOCARCINOMA; BIOMARKERS; PATHWAYS; GENES},
   language = {eng},
   issn = {2052-4463},
   journal = {SCIENTIFIC DATA},
   title = {ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer},
   url = {https://www.nature.com/articles/s41597-019-0198-z.pdf},
   volume = {6},
   year = {2019}
}

TY  - JOUR
ID  - 1605485
AU  - Esteban-Gil, Angel - Perez-Sanz, Fernando - Garcia-Solano, Jose - Alburquerque-Gonzalez, Begona - Parreno-Gonzalez, Maria - Legaz-Garcia, Maria del Carmen - Fernandez-Breis, Jesualdo Tomas - Rodriguez-Braun, Edith - Pimentel, Paola - Tuomisto, Anne - Makinen, Markus - Slabý, Ondřej - Conesa-Zamora, Pablo
PY  - 2019
TI  - ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer
JF  - SCIENTIFIC DATA
VL  - 6
IS  - OCT 31 2019
SP  - 1-14
EP  - 1-14
PB  - NATURE PUBLISHING GROUP
SN  - 20524463
KW  - MICROSATELLITE INSTABILITY
KW  - PROMOTER HYPERMETHYLATION
KW  - SERRATED POLYPS
KW  - COLON-CANCER
KW  - PHENOTYPE
KW  - CARCINOGENESIS
KW  - ADENOCARCINOMA
KW  - BIOMARKERS
KW  - PATHWAYS
KW  - GENES
UR  - https://www.nature.com/articles/s41597-019-0198-z.pdf
L2  - https://www.nature.com/articles/s41597-019-0198-z.pdf
N2  - Colorectal cancer (CRC) is the third leading cause of cancer mortality worldwide. Different pathological pathways and molecular drivers have been described and some of the associated markers are used to select effective anti-neoplastic therapy. More recent evidence points to a causal role of microbiota and altered microRNA expression in CRC carcinogenesis, but their relationship with pathological drivers or molecular phenotypes is not clearly established. Joint analysis of clinical and omics data can help clarify such relations. We present ColPortal, a platform that integrates transcriptomic, microtranscriptomic, methylomic and microbiota data of patients with colorectal cancer. ColPortal also includes detailed information of histological features and digital histological slides from the study cases, since histology is a morphological manifestation of a complex molecular change. The current cohort consists of Caucasian patients from Europe. For each patient, demographic information, location, histology, tumor staging, tissue prognostic factors, molecular biomarker status and clinical outcomes are integrated with omics data. ColPortal allows one to perform multiomics analyses for groups of patients selected by their clinical data.
ER  -

ESTEBAN-GIL, Angel, Fernando PEREZ-SANZ, Jose GARCIA-SOLANO, Begona ALBURQUERQUE-GONZALEZ, Maria PARRENO-GONZALEZ, Maria del Carmen LEGAZ-GARCIA, Jesualdo Tomas FERNANDEZ-BREIS, Edith RODRIGUEZ-BRAUN, Paola PIMENTEL, Anne TUOMISTO, Markus MAKINEN, Ondřej SLABÝ a Pablo CONESA-ZAMORA. ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer. \textit{SCIENTIFIC DATA}. LONDON: NATURE PUBLISHING GROUP, 2019, roč.~6, OCT 31 2019, s.~1-14. ISSN~2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-019-0198-z.

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