Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon
from the Rhodobacteraceae family isolated from
heavy-metal-contaminated sludge

J 2019

Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon from the Rhodobacteraceae family isolated from heavy-metal-contaminated sludge

SUMAN, Jachym, Andrea ZUBROVA, Katerina ROJIKOVA, Radko PECHAR, Pavel ŠVEC et. al.

Základní údaje

Originální název

Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon from the Rhodobacteraceae family isolated from heavy-metal-contaminated sludge

Autoři

SUMAN, Jachym (garant), Andrea ZUBROVA, Katerina ROJIKOVA, Radko PECHAR, Pavel ŠVEC (203 Česká republika, domácí), Tomas CAJTHAML, Pavel ULBRICH, Jakub RIDL, Hynek STRNAD a Ondrej UHLIK

Vydání

International Journal of systematic and Evolutionary Microbiology, LONDON, MICROBIOLOGY SOC, 2019, 1466-5026

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10606 Microbiology

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 2.415

Kód RIV

RIV/00216224:14310/19:00113481

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1099/ijsem.0.003493

UT WoS

000478785800033

Klíčová slova anglicky

Rhodobacteraceae; Pseudogemmobacter bohemicus; 16S rRNA gene analysis; chemotaxonomic characterization; percentage of conserved proteins; heavy metals

Štítky

rivok

Změněno: 11. 5. 2020 10:38, Mgr. Marie Šípková, DiS.

Anotace

V originále

The creamy white to beige, aerobic, non-motile, ovoid to rod-shaped, Gram-stain-negative strain, Cd-10(T), was isolated from heavy-metal-contaminated sludge from a decantation basin of a heavy metal processing factory based on its ability to tolerate CdCl2 in the cultivation medium. In the reconstruction of its phylogeny based on 16S rRNA gene sequences, strain Cd-10(T) clustered with species of the genera Gemmobacter, Xinfangfangia, Tabrizicola and Rhodobacter within the family Rhodobacteraceae. Its 16S rRNA gene sequence exhibited 96.32% pairwise similarity to the type strain of Xinfangfangia soli, 95.3 % to that of Gemmobacter intermedius, followed by Tabrizicola fusiformis (95.10 %), Rhodobacter sediminis (94.88 %), Gemmobacter nectariphilus and Rhodobacter capsulatus (both 94.81%). The major respiratory quinone was Q-10 accompanied by Q-9, the fatty acid profile consisted predominantly of C-18:1 omega 7C, C-18:0, C-16:0 and C-16:1 omega 7c, the major polar lipids were phosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylcholine and diphosphatidylglycerol. An analysis of the percentage of conserved proteins deduced from draft or complete genomic sequences of strain Cd-10(T) and representatives of its closest relatives suggested that strain Cd-10(T) is a member of a novel genus within the Rhodobacteraceae family for which we propose the name Pseudogemmobacter. Strain Cd-10(T) (=DSM 103618(T)=NCCB 100645(T)) is the type strain of Pseudogemmobacter bohemicus gen. nov., sp. nov., the type species of the genus Pseudogemmobacter gen. nov.

Citovat

SUMAN, Jachym, Andrea ZUBROVA, Katerina ROJIKOVA, Radko PECHAR, Pavel ŠVEC, Tomas CAJTHAML, Pavel ULBRICH, Jakub RIDL, Hynek STRNAD a Ondrej UHLIK. Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon from the Rhodobacteraceae family isolated from heavy-metal-contaminated sludge. International Journal of systematic and Evolutionary Microbiology. LONDON: MICROBIOLOGY SOC, 2019, roč. 69, č. 8, s. 2401-2407. ISSN 1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijsem.0.003493.

@article{1641856,
   author = {Suman, Jachym and Zubrova, Andrea and Rojikova, Katerina and Pechar, Radko and Švec, Pavel and Cajthaml, Tomas and Ulbrich, Pavel and Ridl, Jakub and Strnad, Hynek and Uhlik, Ondrej},
   article_location = {LONDON},
   article_number = {8},
   doi = {http://dx.doi.org/10.1099/ijsem.0.003493},
   keywords = {Rhodobacteraceae; Pseudogemmobacter bohemicus; 16S rRNA gene analysis; chemotaxonomic characterization; percentage of conserved proteins; heavy metals},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of systematic and Evolutionary Microbiology},
   title = {Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon from the Rhodobacteraceae family isolated from heavy-metal-contaminated sludge},
   url = {https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.003493#tab2},
   volume = {69},
   year = {2019}
}

TY  - JOUR
ID  - 1641856
AU  - Suman, Jachym - Zubrova, Andrea - Rojikova, Katerina - Pechar, Radko - Švec, Pavel - Cajthaml, Tomas - Ulbrich, Pavel - Ridl, Jakub - Strnad, Hynek - Uhlik, Ondrej
PY  - 2019
TI  - Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon from the Rhodobacteraceae family isolated from heavy-metal-contaminated sludge
JF  - International Journal of systematic and Evolutionary Microbiology
VL  - 69
IS  - 8
SP  - 2401-2407
EP  - 2401-2407
PB  - MICROBIOLOGY SOC
SN  - 14665026
KW  - Rhodobacteraceae
KW  - Pseudogemmobacter bohemicus
KW  - 16S rRNA gene analysis
KW  - chemotaxonomic characterization
KW  - percentage of conserved proteins
KW  - heavy metals
UR  - https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.003493#tab2
L2  - https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.003493#tab2
N2  - The creamy white to beige, aerobic, non-motile, ovoid to rod-shaped, Gram-stain-negative strain, Cd-10(T), was isolated from heavy-metal-contaminated sludge from a decantation basin of a heavy metal processing factory based on its ability to tolerate CdCl2 in the cultivation medium. In the reconstruction of its phylogeny based on 16S rRNA gene sequences, strain Cd-10(T) clustered with species of the genera Gemmobacter, Xinfangfangia, Tabrizicola and Rhodobacter within the family Rhodobacteraceae. Its 16S rRNA gene sequence exhibited 96.32% pairwise similarity to the type strain of Xinfangfangia soli, 95.3 % to that of Gemmobacter intermedius, followed by Tabrizicola fusiformis (95.10 %), Rhodobacter sediminis (94.88 %), Gemmobacter nectariphilus and Rhodobacter capsulatus (both 94.81%). The major respiratory quinone was Q-10 accompanied by Q-9, the fatty acid profile consisted predominantly of C-18:1 omega 7C, C-18:0, C-16:0 and C-16:1 omega 7c, the major polar lipids were phosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylcholine and diphosphatidylglycerol. An analysis of the percentage of conserved proteins deduced from draft or complete genomic sequences of strain Cd-10(T) and representatives of its closest relatives suggested that strain Cd-10(T) is a member of a novel genus within the Rhodobacteraceae family for which we propose the name Pseudogemmobacter. Strain Cd-10(T) (=DSM 103618(T)=NCCB 100645(T)) is the type strain of Pseudogemmobacter bohemicus gen. nov., sp. nov., the type species of the genus Pseudogemmobacter gen. nov.
ER  -

SUMAN, Jachym, Andrea ZUBROVA, Katerina ROJIKOVA, Radko PECHAR, Pavel ŠVEC, Tomas CAJTHAML, Pavel ULBRICH, Jakub RIDL, Hynek STRNAD a Ondrej UHLIK. Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon from the Rhodobacteraceae family isolated from heavy-metal-contaminated sludge. \textit{International Journal of systematic and Evolutionary Microbiology}. LONDON: MICROBIOLOGY SOC, 2019, roč.~69, č.~8, s.~2401-2407. ISSN~1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijsem.0.003493.

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