Crystal structure of zymonic acid and a redetermination of its
precursor, pyruvic acid

J 2019

Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid

HEGER, Dominik, Alexis J EUGENE, Sean R. PARKIN a Marcelo I. GUZMAN

Základní údaje

Originální název

Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid

Autoři

HEGER, Dominik (203 Česká republika, garant, domácí), Alexis J EUGENE, Sean R. PARKIN a Marcelo I. GUZMAN

Vydání

ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, CHESTER, INT UNION CRYSTALLOGRAPHY, 2019, 2056-9890

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10406 Analytical chemistry

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 0.347 v roce 2011

Kód RIV

RIV/00216224:14310/19:00113527

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1107/S2056989019007072

UT WoS

000477632400033

Klíčová slova anglicky

crystal structure; hydrogen bonding; low temperature; zymonic; pyruvic

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 2. 4. 2020 15:50, Mgr. Marie Šípková, DiS.

Anotace

V originále

The structure of zymonic acid (systematic name: 4-hydroxy-2-methyl-5-oxo-2,5-dihydrofuran-2-carboxylic acid), C6H6O5, which had previously eluded crystallographic determination, is presented here for the first time. It forms by intramolecular condensation of parapyruvic acid, which is the product of aldol condensation of pyruvic acid. A redetermination of the crystal structure of pyruvic acid (systematic name: 2-oxopropanoic acid), C3H4O3, at low temperature (90 K) and with increased precision, is also presented [for the previous structure, see: Harata et al. (1977). Acta Cryst. B33, 210-212]. In zymonic acid, the hydroxylactone ring is close to planar (r.m.s. deviation = 0.0108 angstrom) and the dihedral angle between the ring and the plane formed by the bonds of the methyl and carboxylic acid carbon atoms to the ring is 88.68 (7)degrees. The torsion angle of the carboxylic acid group relative to the ring is 12.04 (16)degrees. The pyruvic acid molecule is almost planar, having a dihedral angle between the carboxylic acid and methyl-ketone groups of 3.95 (6)degrees. Intermolecular interactions in both crystal structures are dominated by hydrogen bonding. The common R-2(2) (8) hydrogen-bonding motif links carboxylic acid groups on adjacent molecules in both structures. In zymonic acid, this results in dimers about a crystallographic twofold of space group C2/c, which forces the carboxylic acid group to be disordered exactly 50: 50, which scrambles the carbonyl and hydroxyl groups and gives an apparent equalization of the C-O bond lengths [1.2568 (16) and 1.2602 (16) angstrom]. The other hydrogen bonds in zymonic acid (O-H center dot center dot center dot O and weak C-H center dot center dot center dot O), link molecules across a 2(1)-screw axis, and generate an R-2(2)(9) motif. These hydrogen-bonding interactions propagate to form extended pleated sheets in the ab plane. Stacking of these zigzag sheets along c involves only van der Waals contacts. In pyruvic acid, inversion-related molecules are linked into R-2(2)(8) dimers, with van der Waals interactions between dimers as the only other intermolecular contacts.

Citovat

HEGER, Dominik, Alexis J EUGENE, Sean R. PARKIN a Marcelo I. GUZMAN. Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid. ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS. CHESTER: INT UNION CRYSTALLOGRAPHY, 2019, roč. 75, JUN 2019, s. "858"-"+", 11 s. ISSN 2056-9890. Dostupné z: https://dx.doi.org/10.1107/S2056989019007072.

@article{1642217,
   author = {Heger, Dominik and Eugene, Alexis J and Parkin, Sean R. and Guzman, Marcelo I.},
   article_location = {CHESTER},
   article_number = {JUN 2019},
   doi = {http://dx.doi.org/10.1107/S2056989019007072},
   keywords = {crystal structure; hydrogen bonding; low temperature; zymonic; pyruvic},
   language = {eng},
   issn = {2056-9890},
   journal = {ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS},
   title = {Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid},
   url = {http://scripts.iucr.org/cgi-bin/paper?S2056989019007072},
   volume = {75},
   year = {2019}
}

TY  - JOUR
ID  - 1642217
AU  - Heger, Dominik - Eugene, Alexis J - Parkin, Sean R. - Guzman, Marcelo I.
PY  - 2019
TI  - Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
JF  - ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS
VL  - 75
IS  - JUN 2019
SP  - "858"-"+"
EP  - "858"-"+"
PB  - INT UNION CRYSTALLOGRAPHY
SN  - 20569890
KW  - crystal structure
KW  - hydrogen bonding
KW  - low temperature
KW  - zymonic
KW  - pyruvic
UR  - http://scripts.iucr.org/cgi-bin/paper?S2056989019007072
L2  - http://scripts.iucr.org/cgi-bin/paper?S2056989019007072
N2  - The structure of zymonic acid (systematic name: 4-hydroxy-2-methyl-5-oxo-2,5-dihydrofuran-2-carboxylic acid), C6H6O5, which had previously eluded crystallographic determination, is presented here for the first time. It forms by intramolecular condensation of parapyruvic acid, which is the product of aldol condensation of pyruvic acid. A redetermination of the crystal structure of pyruvic acid (systematic name: 2-oxopropanoic acid), C3H4O3, at low temperature (90 K) and with increased precision, is also presented [for the previous structure, see: Harata et al. (1977). Acta Cryst. B33, 210-212]. In zymonic acid, the hydroxylactone ring is close to planar (r.m.s. deviation = 0.0108 angstrom) and the dihedral angle between the ring and the plane formed by the bonds of the methyl and carboxylic acid carbon atoms to the ring is 88.68 (7)degrees. The torsion angle of the carboxylic acid group relative to the ring is 12.04 (16)degrees. The pyruvic acid molecule is almost planar, having a dihedral angle between the carboxylic acid and methyl-ketone groups of 3.95 (6)degrees. Intermolecular interactions in both crystal structures are dominated by hydrogen bonding. The common R-2(2) (8) hydrogen-bonding motif links carboxylic acid groups on adjacent molecules in both structures. In zymonic acid, this results in dimers about a crystallographic twofold of space group C2/c, which forces the carboxylic acid group to be disordered exactly 50: 50, which scrambles the carbonyl and hydroxyl groups and gives an apparent equalization of the C-O bond lengths [1.2568 (16) and 1.2602 (16) angstrom]. The other hydrogen bonds in zymonic acid (O-H center dot center dot center dot O and weak C-H center dot center dot center dot O), link molecules across a 2(1)-screw axis, and generate an R-2(2)(9) motif. These hydrogen-bonding interactions propagate to form extended pleated sheets in the ab plane. Stacking of these zigzag sheets along c involves only van der Waals contacts. In pyruvic acid, inversion-related molecules are linked into R-2(2)(8) dimers, with van der Waals interactions between dimers as the only other intermolecular contacts.
ER  -

HEGER, Dominik, Alexis J EUGENE, Sean R. PARKIN a Marcelo I. GUZMAN. Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid. \textit{ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS}. CHESTER: INT UNION CRYSTALLOGRAPHY, 2019, roč.~75, JUN 2019, s.~''858''-''+'', 11 s. ISSN~2056-9890. Dostupné z: https://dx.doi.org/10.1107/S2056989019007072.

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