AKBAS, Cem Emre and Michal KOZUBEK. Condensed U-Net (CU-Net): An Improved U-Net Architecture for Cell Segmentation Powered by 4x4 Max-Pooling Layers. Online. In IEEE 17th International Symposium on Biomedical Imaging. Iowa: IEEE, 2020. p. 446-450. ISBN 978-1-5386-9330-8. Available from: https://dx.doi.org/10.1109/ISBI45749.2020.9098351. [citováno 2024-04-24]
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Basic information
Original name Condensed U-Net (CU-Net): An Improved U-Net Architecture for Cell Segmentation Powered by 4x4 Max-Pooling Layers
Authors AKBAS, Cem Emre (792 Turkey, belonging to the institution) and Michal KOZUBEK (203 Czech Republic, guarantor, belonging to the institution)
Edition Iowa, IEEE 17th International Symposium on Biomedical Imaging, p. 446-450, 5 pp. 2020.
Publisher IEEE
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
Publication form electronic version available online
WWW URL
RIV identification code RIV/00216224:14330/20:00115503
Organization unit Faculty of Informatics
ISBN 978-1-5386-9330-8
ISSN 1945-7928
Doi http://dx.doi.org/10.1109/ISBI45749.2020.9098351
UT WoS 000578080300083
Keywords in English Biomedical Image Segmentation; Convolutional Neural Networks; Deep Learning; Feature Learning; Max Pooling
Tags cbia-web, firank_B
Tags International impact, Reviewed
Changed by Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 10/5/2021 05:41.
Abstract
Recently, the U-Net has been the dominant approach in the cell segmentation task in biomedical images due to its success in a wide range of image recognition tasks. However, recent studies did not focus enough on updating the architecture of the U-Net and designing specialized loss functions for bioimage segmentation. We show that the U-Net architecture can achieve more successful results with efficient architectural improvements. We propose a condensed encoder-decoder scheme that employs the 4x4 max-pooling operation and triple convolutional layers. The proposed network architecture is trained using a novel combined loss function specifically designed for bioimage segmentation. On the benchmark datasets from the Cell Tracking Challenge, the experimental results show that the proposed cell segmentation system outperforms the U-Net.
Links
EF16_013/0001775, research and development projectName: Modernizace a podpora výzkumných aktivit národní infrastruktury pro biologické a medicínské zobrazování Czech-BioImaging
LTC17016, research and development projectName: Benchmarking algoritmů segmentace a sledování buněk
Investor: Ministry of Education, Youth and Sports of the CR, Benchmarking of algorithms for cell segmentation and tracking, INTER-COST
MUNI/A/1050/2019, interní kód MUName: Rozsáhlé výpočetní systémy: modely, aplikace a verifikace IX (Acronym: SV-FI MAV IX)
Investor: Masaryk University, Category A
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