Chromatin associations in Arabidopsis interphase nuclei

J 2014

Chromatin associations in Arabidopsis interphase nuclei

SCHUBERT, Veit, Radoslaw RUDNIK a Ingo SCHUBERT

Základní údaje

Originální název

Chromatin associations in Arabidopsis interphase nuclei

Autoři

SCHUBERT, Veit (garant), Radoslaw RUDNIK a Ingo SCHUBERT (276 Německo, domácí)

Vydání

FRONTIERS IN GENETICS, LAUSANNE, FRONTIERS MEDIA SA, 2014, 1664-8021

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10603 Genetics and heredity

Stát vydavatele

Švýcarsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.3389/fgene.2014.00389

UT WoS

000347940300001

Klíčová slova anglicky

TRANSCRIPTION FACTORIES; GENE-EXPRESSION; CHROMOSOME TERRITORIES; DROSOPHILA GENOME; SISTER CHROMATIDS; RNA-POLYMERASES; YEAST GENOME; ORGANIZATION; THALIANA; RANGE

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 19. 6. 2020 13:57, Mgr. Marie Šípková, DiS.

Anotace

V originále

The arrangement of chromatin within interphase nuclei seems to be caused by topological constraints and related to gene expression depending on tissue and developmental stage. In yeast and animals it was found that homologous and heterologous chromatin association are required to realize faithful expression and DNA repair. To test whether such associations are present in plants we analyzed Arabidopsis thaliana interphase nuclei by FISH using probes from different chromosomes. We found that chromatin fiber movement and variable associations, although in general relatively seldom, may occur between euchromatin segments along chromosomes, sometimes even over large distances. The combination of euchromatin segments bearing high or low co-expressing genes did not reveal different association frequencies probably due to adjacent genes of deviating expression patterns. Based on previous data and on FISH analyses presented here, we conclude that the global interphase chromatin organization in A. thaliana is relatively stable, due to the location of its 10 centromeres at the nuclear periphery and of the telomeres mainly at the centrally localized nucleolus. Nevertheless, chromatin movement enables a flexible spatial genome arrangement in plant nuclei.

Návaznosti

EE2.3.20.0189, projekt VaV

Název: Rozvoj výzkumné excelence v oblasti evoluční cytogenomiky, epigenetiky a buněčné signalizace

Citovat

SCHUBERT, Veit, Radoslaw RUDNIK a Ingo SCHUBERT. Chromatin associations in Arabidopsis interphase nuclei. FRONTIERS IN GENETICS. LAUSANNE: FRONTIERS MEDIA SA, 2014, roč. 5, NOV 13 2014, s. 1-11. ISSN 1664-8021. Dostupné z: https://dx.doi.org/10.3389/fgene.2014.00389.

@article{1663180,
   author = {Schubert, Veit and Rudnik, Radoslaw and Schubert, Ingo},
   article_location = {LAUSANNE},
   article_number = {NOV 13 2014},
   doi = {http://dx.doi.org/10.3389/fgene.2014.00389},
   keywords = {TRANSCRIPTION FACTORIES; GENE-EXPRESSION; CHROMOSOME TERRITORIES; DROSOPHILA GENOME; SISTER CHROMATIDS; RNA-POLYMERASES; YEAST GENOME; ORGANIZATION; THALIANA; RANGE},
   language = {eng},
   issn = {1664-8021},
   journal = {FRONTIERS IN GENETICS},
   title = {Chromatin associations in Arabidopsis interphase nuclei},
   url = {https://doi.org/10.3389/fgene.2014.00389},
   volume = {5},
   year = {2014}
}

TY  - JOUR
ID  - 1663180
AU  - Schubert, Veit - Rudnik, Radoslaw - Schubert, Ingo
PY  - 2014
TI  - Chromatin associations in Arabidopsis interphase nuclei
JF  - FRONTIERS IN GENETICS
VL  - 5
IS  - NOV 13 2014
SP  - 1-11
EP  - 1-11
PB  - FRONTIERS MEDIA SA
SN  - 16648021
KW  - TRANSCRIPTION FACTORIES
KW  - GENE-EXPRESSION
KW  - CHROMOSOME TERRITORIES
KW  - DROSOPHILA GENOME
KW  - SISTER CHROMATIDS
KW  - RNA-POLYMERASES
KW  - YEAST GENOME
KW  - ORGANIZATION
KW  - THALIANA
KW  - RANGE
UR  - https://doi.org/10.3389/fgene.2014.00389
L2  - https://doi.org/10.3389/fgene.2014.00389
N2  - The arrangement of chromatin within interphase nuclei seems to be caused by topological constraints and related to gene expression depending on tissue and developmental stage. In yeast and animals it was found that homologous and heterologous chromatin association are required to realize faithful expression and DNA repair. To test whether such associations are present in plants we analyzed Arabidopsis thaliana interphase nuclei by FISH using probes from different chromosomes. We found that chromatin fiber movement and variable associations, although in general relatively seldom, may occur between euchromatin segments along chromosomes, sometimes even over large distances. The combination of euchromatin segments bearing high or low co-expressing genes did not reveal different association frequencies probably due to adjacent genes of deviating expression patterns. Based on previous data and on FISH analyses presented here, we conclude that the global interphase chromatin organization in A. thaliana is relatively stable, due to the location of its 10 centromeres at the nuclear periphery and of the telomeres mainly at the centrally localized nucleolus. Nevertheless, chromatin movement enables a flexible spatial genome arrangement in plant nuclei.
ER  -

SCHUBERT, Veit, Radoslaw RUDNIK a Ingo SCHUBERT. Chromatin associations in Arabidopsis interphase nuclei. \textit{FRONTIERS IN GENETICS}. LAUSANNE: FRONTIERS MEDIA SA, 2014, roč.~5, NOV 13 2014, s.~1-11. ISSN~1664-8021. Dostupné z: https://dx.doi.org/10.3389/fgene.2014.00389.

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