PICART-PICOLO, A., S. GROB, N. PICAULT, Michal FRANEK, C. LLAURO, T. HALTER, T.R. MAIER, E. JOBET, J. DESCOMBIN, P.P. ZHANG, V. PARAMASIVAN, T.J. BAUM, L. NAVARRO, Martina DVOŘÁČKOVÁ, M. MIROUZE a F. PONTVIANNE. Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response. Genome research. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT, 2020, roč. 30, č. 11, s. 1583-1592. ISSN 1088-9051. Dostupné z: https://dx.doi.org/10.1101/gr.261586.120. |
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@article{1749406, author = {PicartandPicolo, A. and Grob, S. and Picault, N. and Franek, Michal and Llauro, C. and Halter, T. and Maier, T.R. and Jobet, E. and Descombin, J. and Zhang, P.P. and Paramasivan, V. and Baum, T.J. and Navarro, L. and Dvořáčková, Martina and Mirouze, M. and Pontvianne, F.}, article_location = {COLD SPRING HARBOR}, article_number = {11}, doi = {http://dx.doi.org/10.1101/gr.261586.120}, keywords = {RIBOSOMAL-RNA GENES; SISTER-CHROMATID EXCHANGE; COPY NUMBER VARIATION; ARABIDOPSIS-THALIANA; DOSAGE CONTROL; REVEALS; NUCLEOLUS; DOMAINS; TRANSCRIPTION; MECHANISMS}, language = {eng}, issn = {1088-9051}, journal = {Genome research}, title = {Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response}, url = {https://genome.cshlp.org/content/30/11/1583}, volume = {30}, year = {2020} }
TY - JOUR ID - 1749406 AU - Picart-Picolo, A. - Grob, S. - Picault, N. - Franek, Michal - Llauro, C. - Halter, T. - Maier, T.R. - Jobet, E. - Descombin, J. - Zhang, P.P. - Paramasivan, V. - Baum, T.J. - Navarro, L. - Dvořáčková, Martina - Mirouze, M. - Pontvianne, F. PY - 2020 TI - Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response JF - Genome research VL - 30 IS - 11 SP - 1583-1592 EP - 1583-1592 PB - COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT SN - 10889051 KW - RIBOSOMAL-RNA GENES KW - SISTER-CHROMATID EXCHANGE KW - COPY NUMBER VARIATION KW - ARABIDOPSIS-THALIANA KW - DOSAGE CONTROL KW - REVEALS KW - NUCLEOLUS KW - DOMAINS KW - TRANSCRIPTION KW - MECHANISMS UR - https://genome.cshlp.org/content/30/11/1583 N2 - Rapid plant genome evolution is crucial to adapt to environmental changes. Chromosomal rearrangements and gene copy number variation (CNV) are two important tools for genome evolution and sources for the creation of new genes. However, their emergence takes many generations. In this study, we show that in Arabidopsis thaliana, a significant loss of ribosomal RNA (rRNA) genes with a past history of a mutation for the chromatin assembly factor 1 (CAF1) complex causes rapid changes in the genome structure. Using long-read sequencing and microscopic approaches, we have identified up to 15 independent large tandem duplications in direct orientation (TDDOs) ranging from 60 kb to 1.44 Mb. Our data suggest that these TDDOs appeared within a few generations, leading to the duplication of hundreds of genes. By subsequently focusing on a line only containing 20% of rRNA gene copies (20rDNA line), we investigated the impact of TDDOs on 3D genome organization, gene expression, and cytosine methylation. We found that duplicated genes often accumulate more transcripts. Among them, several are involved in plant-pathogen response, which could explain why the 20rDNA line is hyper-resistant to both bacterial and nematode infections. Finally, we show that the TDDOs create gene fusions and/or truncations and discuss their potential implications for the evolution of plant genomes. ER -
PICART-PICOLO, A., S. GROB, N. PICAULT, Michal FRANEK, C. LLAURO, T. HALTER, T.R. MAIER, E. JOBET, J. DESCOMBIN, P.P. ZHANG, V. PARAMASIVAN, T.J. BAUM, L. NAVARRO, Martina DVOŘÁČKOVÁ, M. MIROUZE a F. PONTVIANNE. Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response. \textit{Genome research}. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT, 2020, roč.~30, č.~11, s.~1583-1592. ISSN~1088-9051. Dostupné z: https://dx.doi.org/10.1101/gr.261586.120.
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