BARTAS, Martin, Pratik GOSWAMI, Matej LEXA, Jiří ČERVEŇ, Adriana VOLNÁ, Miroslav FOJTA, Vaclav BRAZDA a Petr PEČINKA. Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains. Briefings in Bioinformatics. Oxford University Press, 2021, roč. 22, č. 5, s. "bbab129", 17 s. ISSN 1467-5463. Dostupné z: https://dx.doi.org/10.1093/bib/bbab129. |
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@article{1755027, author = {Bartas, Martin and Goswami, Pratik and Lexa, Matej and Červeň, Jiří and Volná, Adriana and Fojta, Miroslav and Brazda, Vaclav and Pečinka, Petr}, article_number = {5}, doi = {http://dx.doi.org/10.1093/bib/bbab129}, keywords = {SARS-CoV-2; mutations; inverted repeats}, language = {eng}, issn = {1467-5463}, journal = {Briefings in Bioinformatics}, title = {Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains}, url = {https://doi.org/10.1093/bib/bbab129}, volume = {22}, year = {2021} }
TY - JOUR ID - 1755027 AU - Bartas, Martin - Goswami, Pratik - Lexa, Matej - Červeň, Jiří - Volná, Adriana - Fojta, Miroslav - Brazda, Vaclav - Pečinka, Petr PY - 2021 TI - Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains JF - Briefings in Bioinformatics VL - 22 IS - 5 SP - "bbab129" EP - "bbab129" PB - Oxford University Press SN - 14675463 KW - SARS-CoV-2 KW - mutations KW - inverted repeats UR - https://doi.org/10.1093/bib/bbab129 N2 - In a recently published paper, we have found that SARS-CoV-2 hot-spot mutations are significantly associated with inverted repeat loci and CG dinucleotides (Goswami, Bartas et al., 2020). However, fast-spreading strains with new mutations (so-called mink farm mutations, England mutations, and Japan mutations) have been recently described. We used the new datasets to check the positioning of mutation sites in genomes of the new SARS-CoV-2 strains. Using an open-access Palindrome analyzer tool we found mutations in these new strains to be significantly enriched in inverted repeat loci. ER -
BARTAS, Martin, Pratik GOSWAMI, Matej LEXA, Jiří ČERVEŇ, Adriana VOLNÁ, Miroslav FOJTA, Vaclav BRAZDA a Petr PEČINKA. Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains. \textit{Briefings in Bioinformatics}. Oxford University Press, 2021, roč.~22, č.~5, s.~''bbab129'', 17 s. ISSN~1467-5463. Dostupné z: https://dx.doi.org/10.1093/bib/bbab129.
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