Development of the Czech Childhood Cancer Information System:
Data Analysis and Interactive Visualization

J 2021

Development of the Czech Childhood Cancer Information System: Data Analysis and Interactive Visualization

KREJČÍ, Denisa, Matěj KAROLYI, Lucie PEHALOVÁ, Jakub ŠČAVNICKÝ, Michaela ZAPLETALOVÁ et. al.

Základní údaje

Originální název

Development of the Czech Childhood Cancer Information System: Data Analysis and Interactive Visualization

Autoři

KREJČÍ, Denisa (203 Česká republika, garant, domácí), Matěj KAROLYI (203 Česká republika, domácí), Lucie PEHALOVÁ (203 Česká republika, domácí), Jakub ŠČAVNICKÝ (703 Slovensko, domácí), Michaela ZAPLETALOVÁ (203 Česká republika, domácí), Ivana KATINOVÁ (203 Česká republika, domácí), Jaroslav ŠTĚRBA (203 Česká republika, domácí), Jan STARY (203 Česká republika), Lenka ŠNAJDROVÁ (203 Česká republika, domácí), Martin KOMENDA (203 Česká republika, domácí) a Ladislav DUŠEK (203 Česká republika, domácí)

Vydání

JMIR PUBLIC HEALTH AND SURVEILLANCE, TORONTO, JMIR PUBLICATIONS, INC, 2021, 2369-2960

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

30304 Public and environmental health

Stát vydavatele

Kanada

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 14.557

Kód RIV

RIV/00216224:14110/21:00123835

Organizační jednotka

Lékařská fakulta

DOI

http://dx.doi.org/10.2196/23990

UT WoS

000738510300007

Klíčová slova anglicky

cancer epidemiology; children; data visualization; software development

Štítky

14110321, 14119612, podil, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 9. 3. 2022 12:36, Mgr. Tereza Miškechová

Anotace

V originále

Background: The knowledge of cancer burden in the population, its time trends, and the possibility of international comparison is an important starting point for cancer programs. A reliable interactive tool describing cancer epidemiology in children and adolescents has been nonexistent in the Czech Republic until recently. Objective: The goal of this study is to develop a new web portal entitled the Czech Childhood Cancer Information System (CCCIS), which would provide information on childhood cancer epidemiology in the Czech Republic. Methods: Data on childhood cancers have been obtained from the Czech National Cancer Registry. These data were validated using the clinical database of childhood cancer patients and subsequently combined with data from the National Register of Hospitalised Patients and with data from death certificates. These validated data were then used to determine the incidence and survival rates of childhood cancer patients aged 0 to 19 years who were diagnosed in the period 1994 to 2016 (N=9435). Data from death certificates were used to monitor long-term mortality trends. The technical solution is based on the robust PHP development Symfony framework, with the PostgreSQL system used to accommodate the data basis. Results: The web portal has been available for anyone since November 2019, providing basic information for experts (ie, analyses and publications) on individual diagnostic groups of childhood cancers. It involves an interactive tool for analytical reporting, which provides information on the following basic topics in the form of graphs or tables: incidence, mortality, and overall survival. Feedback was obtained and the accuracy of outputs published on the CCCIS portal was verified using the following methods: the validation of the theoretical background and the user testing. Conclusions: We developed software capable of processing data from multiple sources, which is freely available to all users and makes it possible to carry out automated analyses even for users without mathematical background; a simple selection of a topic to be analyzed is required from the user.

Návaznosti

MUNI/A/1701/2020, interní kód MU

Název: Personalizovaná léčba v dětské onkologii: na cestě k „liquid dynamic medicine“ a „N-of-1 clinical trials“

Investor: Masarykova univerzita, Personalizovaná léčba v dětské onkologii: na cestě k „liquid dynamic medicine“ a „N-of-1 clinical trials“

Citovat

KREJČÍ, Denisa, Matěj KAROLYI, Lucie PEHALOVÁ, Jakub ŠČAVNICKÝ, Michaela ZAPLETALOVÁ, Ivana KATINOVÁ, Jaroslav ŠTĚRBA, Jan STARY, Lenka ŠNAJDROVÁ, Martin KOMENDA a Ladislav DUŠEK. Development of the Czech Childhood Cancer Information System: Data Analysis and Interactive Visualization. JMIR PUBLIC HEALTH AND SURVEILLANCE. TORONTO: JMIR PUBLICATIONS, INC, 2021, roč. 7, č. 6, s. 1-9. ISSN 2369-2960. Dostupné z: https://dx.doi.org/10.2196/23990.

@article{1823826,
   author = {Krejčí, Denisa and Karolyi, Matěj and Pehalová, Lucie and Ščavnický, Jakub and Zapletalová, Michaela and Katinová, Ivana and Štěrba, Jaroslav and Stary, Jan and Šnajdrová, Lenka and Komenda, Martin and Dušek, Ladislav},
   article_location = {TORONTO},
   article_number = {6},
   doi = {http://dx.doi.org/10.2196/23990},
   keywords = {cancer epidemiology; children; data visualization; software development},
   language = {eng},
   issn = {2369-2960},
   journal = {JMIR PUBLIC HEALTH AND SURVEILLANCE},
   title = {Development of the Czech Childhood Cancer Information System: Data Analysis and Interactive Visualization},
   url = {https://publichealth.jmir.org/2021/6/e23990/authors},
   volume = {7},
   year = {2021}
}

TY  - JOUR
ID  - 1823826
AU  - Krejčí, Denisa - Karolyi, Matěj - Pehalová, Lucie - Ščavnický, Jakub - Zapletalová, Michaela - Katinová, Ivana - Štěrba, Jaroslav - Stary, Jan - Šnajdrová, Lenka - Komenda, Martin - Dušek, Ladislav
PY  - 2021
TI  - Development of the Czech Childhood Cancer Information System: Data Analysis and Interactive Visualization
JF  - JMIR PUBLIC HEALTH AND SURVEILLANCE
VL  - 7
IS  - 6
SP  - 1-9
EP  - 1-9
PB  - JMIR PUBLICATIONS, INC
SN  - 23692960
KW  - cancer epidemiology
KW  - children
KW  - data visualization
KW  - software development
UR  - https://publichealth.jmir.org/2021/6/e23990/authors
N2  - Background: The knowledge of cancer burden in the population, its time trends, and the possibility of international comparison is an important starting point for cancer programs. A reliable interactive tool describing cancer epidemiology in children and adolescents has been nonexistent in the Czech Republic until recently. Objective: The goal of this study is to develop a new web portal entitled the Czech Childhood Cancer Information System (CCCIS), which would provide information on childhood cancer epidemiology in the Czech Republic. Methods: Data on childhood cancers have been obtained from the Czech National Cancer Registry. These data were validated using the clinical database of childhood cancer patients and subsequently combined with data from the National Register of Hospitalised Patients and with data from death certificates. These validated data were then used to determine the incidence and survival rates of childhood cancer patients aged 0 to 19 years who were diagnosed in the period 1994 to 2016 (N=9435). Data from death certificates were used to monitor long-term mortality trends. The technical solution is based on the robust PHP development Symfony framework, with the PostgreSQL system used to accommodate the data basis. Results: The web portal has been available for anyone since November 2019, providing basic information for experts (ie, analyses and publications) on individual diagnostic groups of childhood cancers. It involves an interactive tool for analytical reporting, which provides information on the following basic topics in the form of graphs or tables: incidence, mortality, and overall survival. Feedback was obtained and the accuracy of outputs published on the CCCIS portal was verified using the following methods: the validation of the theoretical background and the user testing. Conclusions: We developed software capable of processing data from multiple sources, which is freely available to all users and makes it possible to carry out automated analyses even for users without mathematical background; a simple selection of a topic to be analyzed is required from the user.
ER  -

KREJČÍ, Denisa, Matěj KAROLYI, Lucie PEHALOVÁ, Jakub ŠČAVNICKÝ, Michaela ZAPLETALOVÁ, Ivana KATINOVÁ, Jaroslav ŠTĚRBA, Jan STARY, Lenka ŠNAJDROVÁ, Martin KOMENDA a Ladislav DUŠEK. Development of the Czech Childhood Cancer Information System: Data Analysis and Interactive Visualization. \textit{JMIR PUBLIC HEALTH AND SURVEILLANCE}. TORONTO: JMIR PUBLICATIONS, INC, 2021, roč.~7, č.~6, s.~1-9. ISSN~2369-2960. Dostupné z: https://dx.doi.org/10.2196/23990.

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