Další formáty:
BibTeX
LaTeX
RIS
@article{1837019, author = {Hermankova, Kristyna and Kourilova, Xenie and Pernicova, Iva and Bezdíček, Matěj and Lengerová, Martina and Obruca, Stanislav and Sedlar, Karel}, article_location = {OXFORD}, article_number = {12}, doi = {http://dx.doi.org/10.1093/gbe/evab280}, keywords = {Tepidimonas taiwanensis; polyhydroxyalkanoates; hybrid assembly; Oxford Nanopore Technologies; functional annotation; alkaline protease}, language = {eng}, issn = {1759-6653}, journal = {GENOME BIOLOGY AND EVOLUTION}, note = {Bez afiliace k MU.}, title = {Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer}, url = {https://academic.oup.com/gbe/article/13/12/evab280/6462190}, volume = {13}, year = {2021} }
TY - JOUR ID - 1837019 AU - Hermankova, Kristyna - Kourilova, Xenie - Pernicova, Iva - Bezdíček, Matěj - Lengerová, Martina - Obruca, Stanislav - Sedlar, Karel PY - 2021 TI - Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer JF - GENOME BIOLOGY AND EVOLUTION VL - 13 IS - 12 SP - 1-5 EP - 1-5 PB - OXFORD UNIV PRESS SN - 17596653 N1 - Bez afiliace k MU. KW - Tepidimonas taiwanensis KW - polyhydroxyalkanoates KW - hybrid assembly KW - Oxford Nanopore Technologies KW - functional annotation KW - alkaline protease UR - https://academic.oup.com/gbe/article/13/12/evab280/6462190 N2 - Tepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain T. taiwanensis LMG 22826T was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs)—renewable and biodegradable polymers representing an alternative to conventional plastics. Here, we present its first complete genome sequence which is also the first complete genome sequence of the whole species. The genome consists of a single 2,915,587-bp-long circular chromosome with GC content of 68.75%. Genome annotation identified 2,764 genes in total while 2,634 open reading frames belonged to protein-coding genes. Although functional annotation of the genome and division of genes into Clusters of Orthologous Groups (COGs) revealed a relatively high number of 694 genes with unknown function or unknown COG, the majority of genes were assigned a function. Most of the genes, 406 in total, were involved in energy production and conversion, and amino acid transport and metabolism. Moreover, particular key genes involved in the metabolism of PHA were identified. Knowledge of the genome in connection with the recently reported ability to produce bioplastics from the waste stream of wine production makes T. taiwanensis LMG 22826T, an ideal candidate for further genome engineering as a bacterium with high biotechnological potential. ER -
HERMANKOVA, Kristyna, Xenie KOURILOVA, Iva PERNICOVA, Matěj BEZDÍČEK, Martina LENGEROVÁ, Stanislav OBRUCA a Karel SEDLAR. Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer. \textit{GENOME BIOLOGY AND EVOLUTION}. OXFORD: OXFORD UNIV PRESS, 2021, roč.~13, č.~12, s.~1-5. ISSN~1759-6653. Dostupné z: https://dx.doi.org/10.1093/gbe/evab280.
|