Complete Genome Sequence of the Type Strain Tepidimonas
taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and
Polyhydroxyalkanoate Producer

J 2021

Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer

HERMANKOVA, Kristyna, Xenie KOURILOVA, Iva PERNICOVA, Matěj BEZDÍČEK, Martina LENGEROVÁ et. al.

Základní údaje

Originální název

Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer

Autoři

HERMANKOVA, Kristyna (203 Česká republika), Xenie KOURILOVA (203 Česká republika), Iva PERNICOVA (203 Česká republika), Matěj BEZDÍČEK (203 Česká republika, domácí), Martina LENGEROVÁ (203 Česká republika, domácí), Stanislav OBRUCA (203 Česká republika) a Karel SEDLAR (203 Česká republika, garant)

Vydání

GENOME BIOLOGY AND EVOLUTION, OXFORD, OXFORD UNIV PRESS, 2021, 1759-6653

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

30101 Human genetics

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 4.065

Kód RIV

RIV/00216224:14110/21:00124283

Organizační jednotka

Lékařská fakulta

DOI

http://dx.doi.org/10.1093/gbe/evab280

UT WoS

000809682900019

Klíčová slova anglicky

Tepidimonas taiwanensis; polyhydroxyalkanoates; hybrid assembly; Oxford Nanopore Technologies; functional annotation; alkaline protease

Štítky

14110212

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 27. 2. 2024 12:19, Mgr. Tereza Miškechová

Anotace

V originále

Tepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain T. taiwanensis LMG 22826T was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs)—renewable and biodegradable polymers representing an alternative to conventional plastics. Here, we present its first complete genome sequence which is also the first complete genome sequence of the whole species. The genome consists of a single 2,915,587-bp-long circular chromosome with GC content of 68.75%. Genome annotation identified 2,764 genes in total while 2,634 open reading frames belonged to protein-coding genes. Although functional annotation of the genome and division of genes into Clusters of Orthologous Groups (COGs) revealed a relatively high number of 694 genes with unknown function or unknown COG, the majority of genes were assigned a function. Most of the genes, 406 in total, were involved in energy production and conversion, and amino acid transport and metabolism. Moreover, particular key genes involved in the metabolism of PHA were identified. Knowledge of the genome in connection with the recently reported ability to produce bioplastics from the waste stream of wine production makes T. taiwanensis LMG 22826T, an ideal candidate for further genome engineering as a bacterium with high biotechnological potential.

Citovat

HERMANKOVA, Kristyna, Xenie KOURILOVA, Iva PERNICOVA, Matěj BEZDÍČEK, Martina LENGEROVÁ, Stanislav OBRUCA a Karel SEDLAR. Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer. GENOME BIOLOGY AND EVOLUTION. OXFORD: OXFORD UNIV PRESS, 2021, roč. 13, č. 12, s. 1-5. ISSN 1759-6653. Dostupné z: https://dx.doi.org/10.1093/gbe/evab280.

@article{1837019,
   author = {Hermankova, Kristyna and Kourilova, Xenie and Pernicova, Iva and Bezdíček, Matěj and Lengerová, Martina and Obruca, Stanislav and Sedlar, Karel},
   article_location = {OXFORD},
   article_number = {12},
   doi = {http://dx.doi.org/10.1093/gbe/evab280},
   keywords = {Tepidimonas taiwanensis; polyhydroxyalkanoates; hybrid assembly; Oxford Nanopore Technologies; functional annotation; alkaline protease},
   language = {eng},
   issn = {1759-6653},
   journal = {GENOME BIOLOGY AND EVOLUTION},
   note = {Bez afiliace k MU.},
   title = {Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer},
   url = {https://academic.oup.com/gbe/article/13/12/evab280/6462190},
   volume = {13},
   year = {2021}
}

TY  - JOUR
ID  - 1837019
AU  - Hermankova, Kristyna - Kourilova, Xenie - Pernicova, Iva - Bezdíček, Matěj - Lengerová, Martina - Obruca, Stanislav - Sedlar, Karel
PY  - 2021
TI  - Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
JF  - GENOME BIOLOGY AND EVOLUTION
VL  - 13
IS  - 12
SP  - 1-5
EP  - 1-5
PB  - OXFORD UNIV PRESS
SN  - 17596653
N1  - Bez afiliace k MU.
KW  - Tepidimonas taiwanensis
KW  - polyhydroxyalkanoates
KW  - hybrid assembly
KW  - Oxford Nanopore Technologies
KW  - functional annotation
KW  - alkaline protease
UR  - https://academic.oup.com/gbe/article/13/12/evab280/6462190
N2  - Tepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain T. taiwanensis LMG 22826T was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs)—renewable and biodegradable polymers representing an alternative to conventional plastics. Here, we present its first complete genome sequence which is also the first complete genome sequence of the whole species. The genome consists of a single 2,915,587-bp-long circular chromosome with GC content of 68.75%. Genome annotation identified 2,764 genes in total while 2,634 open reading frames belonged to protein-coding genes. Although functional annotation of the genome and division of genes into Clusters of Orthologous Groups (COGs) revealed a relatively high number of 694 genes with unknown function or unknown COG, the majority of genes were assigned a function. Most of the genes, 406 in total, were involved in energy production and conversion, and amino acid transport and metabolism. Moreover, particular key genes involved in the metabolism of PHA were identified. Knowledge of the genome in connection with the recently reported ability to produce bioplastics from the waste stream of wine production makes T. taiwanensis LMG 22826T, an ideal candidate for further genome engineering as a bacterium with high biotechnological potential.
ER  -

HERMANKOVA, Kristyna, Xenie KOURILOVA, Iva PERNICOVA, Matěj BEZDÍČEK, Martina LENGEROVÁ, Stanislav OBRUCA a Karel SEDLAR. Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer. \textit{GENOME BIOLOGY AND EVOLUTION}. OXFORD: OXFORD UNIV PRESS, 2021, roč.~13, č.~12, s.~1-5. ISSN~1759-6653. Dostupné z: https://dx.doi.org/10.1093/gbe/evab280.

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