Genome evolution of the psammophyte Pugionium for desert
adaptation and further speciation

J 2021

Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation

HU, Q.J., Y.Z. MA, Terezie MALÍK MANDÁKOVÁ, S. SHI, C.L. CHEN et. al.

Základní údaje

Originální název

Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation

Autoři

HU, Q.J., Y.Z. MA, Terezie MALÍK MANDÁKOVÁ (203 Česká republika, domácí), S. SHI, C.L. CHEN, P.C. SUN, L. ZHANG, L.D. FENG, Y.D. ZHENG, X.Q. FENG, W.J. YANG, J.B. JIANG, T. LI, P.P. ZHOU, Q.S. YU, D.S. WAN, Martin LYSÁK (203 Česká republika, garant, domácí), Z.X. XI, E. NEVO a J.Q. LIU

Vydání

Proceedings of the National Academy of Sciences of the United States of America, WASHINGTON, NATL ACAD SCIENCES, 2021, 0027-8424

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10611 Plant sciences, botany

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 12.779

Kód RIV

RIV/00216224:14740/21:00124290

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.1073/pnas.2025711118

UT WoS

000710710000004

Klíčová slova anglicky

polyploidization; chromosomal structural variation; microhabitat divergence

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 18. 5. 2022 13:41, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

Deserts exert strong selection pressures on plants, but the underlying genomic drivers of ecological adaptation and subsequent speciation remain largely unknown. Here, we generated de novo genome assemblies and conducted population genomic analyses of the psammophytic genus Pugionium (Brassicaceae). Our results indicated that this bispecific genus had undergone an allopolyploid event, and the two parental genomes were derived from two ancestral lineages with different chromosome numbers and structures. The postpolyploid expansion of gene families related to abiotic stress responses and lignin biosynthesis facilitated environmental adaptations of the genus to desert habitats. Population genomic analyses of both species further revealed their recent divergence with continuous gene flow, and the most divergent regions were found to be centered on three highly structurally reshuffled chromosomes. Genes under selection in these regions, which were mainly located in one of the two subgenomes, contributed greatly to the interspecific divergence in microhabitat adaptation.

Návaznosti

LQ1601, projekt VaV

Název: CEITEC 2020 (Akronym: CEITEC2020)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, CEITEC 2020

Citovat

HU, Q.J., Y.Z. MA, Terezie MALÍK MANDÁKOVÁ, S. SHI, C.L. CHEN, P.C. SUN, L. ZHANG, L.D. FENG, Y.D. ZHENG, X.Q. FENG, W.J. YANG, J.B. JIANG, T. LI, P.P. ZHOU, Q.S. YU, D.S. WAN, Martin LYSÁK, Z.X. XI, E. NEVO a J.Q. LIU. Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. WASHINGTON: NATL ACAD SCIENCES, 2021, roč. 118, č. 42, s. „e2025711118“, 7 s. ISSN 0027-8424. Dostupné z: https://dx.doi.org/10.1073/pnas.2025711118.

@article{1837258,
   author = {Hu, Q.J. and Ma, Y.Z. and Malík Mandáková, Terezie and Shi, S. and Chen, C.L. and Sun, P.C. and Zhang, L. and Feng, L.D. and Zheng, Y.D. and Feng, X.Q. and Yang, W.J. and Jiang, J.B. and Li, T. and Zhou, P.P. and Yu, Q.S. and Wan, D.S. and Lysák, Martin and Xi, Z.X. and Nevo, E. and Liu, J.Q.},
   article_location = {WASHINGTON},
   article_number = {42},
   doi = {http://dx.doi.org/10.1073/pnas.2025711118},
   keywords = {polyploidization; chromosomal structural variation; microhabitat divergence},
   language = {eng},
   issn = {0027-8424},
   journal = {Proceedings of the National Academy of Sciences of the United States of America},
   title = {Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation},
   url = {https://www.pnas.org/content/118/42/e2025711118},
   volume = {118},
   year = {2021}
}

TY  - JOUR
ID  - 1837258
AU  - Hu, Q.J. - Ma, Y.Z. - Malík Mandáková, Terezie - Shi, S. - Chen, C.L. - Sun, P.C. - Zhang, L. - Feng, L.D. - Zheng, Y.D. - Feng, X.Q. - Yang, W.J. - Jiang, J.B. - Li, T. - Zhou, P.P. - Yu, Q.S. - Wan, D.S. - Lysák, Martin - Xi, Z.X. - Nevo, E. - Liu, J.Q.
PY  - 2021
TI  - Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation
JF  - Proceedings of the National Academy of Sciences of the United States of America
VL  - 118
IS  - 42
SP  - „e2025711118“
EP  - „e2025711118“
PB  - NATL ACAD SCIENCES
SN  - 00278424
KW  - polyploidization
KW  - chromosomal structural variation
KW  - microhabitat divergence
UR  - https://www.pnas.org/content/118/42/e2025711118
N2  - Deserts exert strong selection pressures on plants, but the underlying genomic drivers of ecological adaptation and subsequent speciation remain largely unknown. Here, we generated de novo genome assemblies and conducted population genomic analyses of the psammophytic genus Pugionium (Brassicaceae). Our results indicated that this bispecific genus had undergone an allopolyploid event, and the two parental genomes were derived from two ancestral lineages with different chromosome numbers and structures. The postpolyploid expansion of gene families related to abiotic stress responses and lignin biosynthesis facilitated environmental adaptations of the genus to desert habitats. Population genomic analyses of both species further revealed their recent divergence with continuous gene flow, and the most divergent regions were found to be centered on three highly structurally reshuffled chromosomes. Genes under selection in these regions, which were mainly located in one of the two subgenomes, contributed greatly to the interspecific divergence in microhabitat adaptation.
ER  -

HU, Q.J., Y.Z. MA, Terezie MALÍK MANDÁKOVÁ, S. SHI, C.L. CHEN, P.C. SUN, L. ZHANG, L.D. FENG, Y.D. ZHENG, X.Q. FENG, W.J. YANG, J.B. JIANG, T. LI, P.P. ZHOU, Q.S. YU, D.S. WAN, Martin LYSÁK, Z.X. XI, E. NEVO a J.Q. LIU. Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation. \textit{Proceedings of the National Academy of Sciences of the United States of America}. WASHINGTON: NATL ACAD SCIENCES, 2021, roč.~118, č.~42, s.~„e2025711118“, 7 s. ISSN~0027-8424. Dostupné z: https://dx.doi.org/10.1073/pnas.2025711118.

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