Ilaps - python software for data reduction and imaging with
LA-ICP-MS

J 2022

Ilaps - python software for data reduction and imaging with LA-ICP-MS

FALTUSOVÁ, Veronika, Tomáš VACULOVIČ, Markéta HOLÁ a Viktor KANICKÝ

Základní údaje

Originální název

Ilaps - python software for data reduction and imaging with LA-ICP-MS

Autoři

FALTUSOVÁ, Veronika (703 Slovensko, domácí), Tomáš VACULOVIČ (203 Česká republika, garant, domácí), Markéta HOLÁ (203 Česká republika, domácí) a Viktor KANICKÝ (203 Česká republika, domácí)

Vydání

Journal of Analytical Atomic Spectrometry, Cambridge, Royal Society of Chemistry, 2022, 0267-9477

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10406 Analytical chemistry

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 3.400

Kód RIV

RIV/00216224:14310/22:00126388

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1039/d1ja00383f

UT WoS

000769608700001

Klíčová slova anglicky

LA-ICP-MS; data; python; imgMS; graphical software

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 8. 8. 2022 15:59, Mgr. Marie Šípková, DiS.

Anotace

V originále

In the past couple of years, laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) has been widely used for trace element analysis in solid samples and the study of their distribution. The data acquired by this technique are exceedingly complex and call for a wealth of processing steps, such as data segmentation, background correction, calibration and normalisation. Imaging of the distribution additionally requires a reconstruction of the data into a two-dimensional matrix. In this work, we present a new standalone software written in python - Ilaps, that allows easy and straightforward processing of the LA-ICP-MS data for bulk analysis and imaging. Ilaps is built using a free, open-source python package imgMS, which simplifies the customisation of the used functions. The combination of imgMS as a python package with a standalone graphical software makes it possible to be used by researchers with or without programming knowledge at the same level. However, at the same time, it encourages open collaboration for the software to evolve. Ilaps does not require any data preparation, and can process a bulk analysis or convert the data into an image in a matter of minutes. The software offers an automatic selection of the signals that are representative of the composition of the sample, but at the same time allows the user to exclude contaminants manually. We discuss the key advantages of Ilaps and show its potential in two separate cases, one focused on bulk analysis of archaeological glass samples and the other on imaging of a mouse brain.

Návaznosti

EF16_026/0008459, projekt VaV

Název: Dlouhodobý výzkum geochemických bariér pro ukládání jaderného odpadu

GA20-02203S, projekt VaV

Název: Analýza tkáňové odpovědi na inhalaci nanočástic kovů a mechanismus jejich čištění

Investor: Grantová agentura ČR, Analysis of tissue response to metal nanoparticles inhalation and mechanisms of their clearance

Citovat

FALTUSOVÁ, Veronika, Tomáš VACULOVIČ, Markéta HOLÁ a Viktor KANICKÝ. Ilaps - python software for data reduction and imaging with LA-ICP-MS. Journal of Analytical Atomic Spectrometry. Cambridge: Royal Society of Chemistry, 2022, roč. 37, č. 4, s. 733-740. ISSN 0267-9477. Dostupné z: https://dx.doi.org/10.1039/d1ja00383f.

@article{2210735,
   author = {Faltusová, Veronika and Vaculovič, Tomáš and Holá, Markéta and Kanický, Viktor},
   article_location = {Cambridge},
   article_number = {4},
   doi = {http://dx.doi.org/10.1039/d1ja00383f},
   keywords = {LA-ICP-MS; data; python; imgMS; graphical software},
   language = {eng},
   issn = {0267-9477},
   journal = {Journal of Analytical Atomic Spectrometry},
   title = {Ilaps - python software for data reduction and imaging with LA-ICP-MS},
   url = {https://pubs.rsc.org/en/content/articlelanding/2022/ja/d1ja00383f},
   volume = {37},
   year = {2022}
}

TY  - JOUR
ID  - 2210735
AU  - Faltusová, Veronika - Vaculovič, Tomáš - Holá, Markéta - Kanický, Viktor
PY  - 2022
TI  - Ilaps - python software for data reduction and imaging with LA-ICP-MS
JF  - Journal of Analytical Atomic Spectrometry
VL  - 37
IS  - 4
SP  - 733-740
EP  - 733-740
PB  - Royal Society of Chemistry
SN  - 02679477
KW  - LA-ICP-MS
KW  - data
KW  - python
KW  - imgMS
KW  - graphical software
UR  - https://pubs.rsc.org/en/content/articlelanding/2022/ja/d1ja00383f
N2  - In the past couple of years, laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) has been widely used for trace element analysis in solid samples and the study of their distribution. The data acquired by this technique are exceedingly complex and call for a wealth of processing steps, such as data segmentation, background correction, calibration and normalisation. Imaging of the distribution additionally requires a reconstruction of the data into a two-dimensional matrix. In this work, we present a new standalone software written in python - Ilaps, that allows easy and straightforward processing of the LA-ICP-MS data for bulk analysis and imaging. Ilaps is built using a free, open-source python package imgMS, which simplifies the customisation of the used functions. The combination of imgMS as a python package with a standalone graphical software makes it possible to be used by researchers with or without programming knowledge at the same level. However, at the same time, it encourages open collaboration for the software to evolve. Ilaps does not require any data preparation, and can process a bulk analysis or convert the data into an image in a matter of minutes. The software offers an automatic selection of the signals that are representative of the composition of the sample, but at the same time allows the user to exclude contaminants manually. We discuss the key advantages of Ilaps and show its potential in two separate cases, one focused on bulk analysis of archaeological glass samples and the other on imaging of a mouse brain.
ER  -

FALTUSOVÁ, Veronika, Tomáš VACULOVIČ, Markéta HOLÁ a Viktor KANICKÝ. Ilaps - python software for data reduction and imaging with LA-ICP-MS. \textit{Journal of Analytical Atomic Spectrometry}. Cambridge: Royal Society of Chemistry, 2022, roč.~37, č.~4, s.~733-740. ISSN~0267-9477. Dostupné z: https://dx.doi.org/10.1039/d1ja00383f.

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