Lightweight Distributed Provenance Model for Complex Real–world
Environments

J 2022

Lightweight Distributed Provenance Model for Complex Real–world Environments

WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER et. al.

Základní údaje

Originální název

Lightweight Distributed Provenance Model for Complex Real–world Environments

Autoři

WITTNER, Rudolf (703 Slovensko, garant, domácí), Cecilia MASCIA (380 Itálie), Matej GALLO (703 Slovensko, domácí), Francesca FREXIA (380 Itálie), Heimo MÜLLER (40 Rakousko), Markus PLASS (40 Rakousko), Jörg GEIGER (276 Německo) a Petr HOLUB (203 Česká republika, domácí)

Vydání

Scientific Data, Berlin, Nature Research, 2022, 2052-4463

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10201 Computer sciences, information science, bioinformatics

Stát vydavatele

Německo

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 9.800

Kód RIV

RIV/00216224:14610/22:00126457

Organizační jednotka

Ústav výpočetní techniky

DOI

http://dx.doi.org/10.1038/s41597-022-01537-6

UT WoS

000842397500003

Klíčová slova česky

provenance;reprodukovatelnost;dohledatelnost;PROV

Klíčová slova anglicky

provenance;reproducibility;traceability;PROV

Štítky

J-Q1, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 30. 3. 2023 12:29, RNDr. Rudolf Wittner

Anotace

V originále

Provenance is information describing the lineage of an object, such as a dataset or biological material. Since these objects can be passed between organizations, each organization can document only parts of the objects life cycle. As a result, interconnection of distributed provenance parts forms distributed provenance chains. Dependant on the actual provenance content, complete provenance chains can provide traceability and contribute to reproducibility and FAIRness of research objects. In this paper, we define a lightweight provenance model based on W3C PROV that enables generation of distributed provenance chains in complex, multi-organizational environments. The application of the model is demonstrated with a use case spanning several steps of a real-world research pipeline — starting with the acquisition of a specimen, its processing and storage, histological examination, and the generation/collection of associated data (images, annotations, clinical data), ending with training an AI model for the detection of tumor in the images. The proposed model has become an open conceptual foundation of the currently developed ISO 23494 standard on provenance for biotechnology domain.

Návaznosti

90140, velká výzkumná infrastruktura

Název: e-INFRA CZ

Citovat

WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Jörg GEIGER a Petr HOLUB. Lightweight Distributed Provenance Model for Complex Real–world Environments. Scientific Data. Berlin: Nature Research, 2022, roč. 2022, č. 9, s. 1-19. ISSN 2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-022-01537-6.

@article{2212026,
   author = {Wittner, Rudolf and Mascia, Cecilia and Gallo, Matej and Frexia, Francesca and Müller, Heimo and Plass, Markus and Geiger, Jörg and Holub, Petr},
   article_location = {Berlin},
   article_number = {9},
   doi = {http://dx.doi.org/10.1038/s41597-022-01537-6},
   keywords = {provenance;reproducibility;traceability;PROV},
   language = {eng},
   issn = {2052-4463},
   journal = {Scientific Data},
   title = {Lightweight Distributed Provenance Model for Complex Real–world Environments},
   url = {https://doi.org/10.1038/s41597-022-01537-6},
   volume = {2022},
   year = {2022}
}

TY  - JOUR
ID  - 2212026
AU  - Wittner, Rudolf - Mascia, Cecilia - Gallo, Matej - Frexia, Francesca - Müller, Heimo - Plass, Markus - Geiger, Jörg - Holub, Petr
PY  - 2022
TI  - Lightweight Distributed Provenance Model for Complex Real–world Environments
JF  - Scientific Data
VL  - 2022
IS  - 9
SP  - 1-19
EP  - 1-19
PB  - Nature Research
SN  - 20524463
KW  - provenance;reproducibility;traceability;PROV
UR  - https://doi.org/10.1038/s41597-022-01537-6
N2  - Provenance is information describing the lineage of an object, such as a dataset or biological material. Since these objects can be passed between organizations, each organization can document only parts of the objects life cycle. As a result, interconnection of distributed provenance parts forms distributed provenance chains. Dependant on the actual provenance content, complete provenance chains can provide traceability and contribute to reproducibility and FAIRness of research objects. In this paper, we define a lightweight provenance model based on W3C PROV that enables generation of distributed provenance chains in complex, multi-organizational environments. The application of the model is demonstrated with a use case spanning several steps of a real-world research pipeline — starting with the acquisition of a specimen, its processing and storage, histological examination, and the generation/collection of associated data (images, annotations, clinical data), ending with training an AI model for the detection of tumor in the images. The proposed model has become an open conceptual foundation of the currently developed ISO 23494 standard on provenance for biotechnology domain.
ER  -

WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Jörg GEIGER a Petr HOLUB. Lightweight Distributed Provenance Model for Complex Real–world Environments. \textit{Scientific Data}. Berlin: Nature Research, 2022, roč.~2022, č.~9, s.~1-19. ISSN~2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-022-01537-6.

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