PATI, Sarthak, Ujjwal BAID, Brandon EDWARDS, Micah SHELLER, Shih-Han WANG, G Anthony REINA, Patrick FOLEY, Alexey GRUZDEV, Deepthi KARKADA, Christos DAVATZIKOS, Chiharu SAKO, Satyam GHODASARA, Michel BILELLO, Suyash MOHAN, Philipp VOLLMUTH, Gianluca BRUGNARA, Chandrakanth J PREETHA, Felix SAHM, Klaus MAIER-HEIN, Maximilian ZENK, Martin BENDSZUS, Wolfgang WICK, Evan CALABRESE, Jeffrey RUDIE, Javier VILLANUEVA-MEYER, Soonmee CHA, Madhura INGALHALIKAR, Manali JADHAV, Umang PANDEY, Jitender SAINI, John GARRETT, Matthew LARSON, Robert JERAJ, Stuart CURRIE, Russell FROOD, Kavi FATANIA, Raymond Y HUANG, Ken CHANG, Carmen Balaña QUINTERO, Jaume CAPELLADES, Josep PUIG, Johannes TRENKLER, Josef PICHLER, Georg NECKER, Andreas HAUNSCHMIDT, Stephan MECKEL, Gaurav SHUKLA, Spencer LIEM, Gregory S ALEXANDER, Joseph LOMBARDO, Joshua D PALMER, Adam E FLANDERS, Adam P DICKER, Haris I SAIR, Craig K JONES, Archana VENKATARAMAN, Meirui JIANG, Tiffany Y SO, Cheng CHEN, Pheng Ann HENG, Qi DOU, Michal KOZUBEK, Filip LUX, Jan MICHÁLEK, Petr MATULA, Miloš KEŘKOVSKÝ, Tereza KOPŘIVOVÁ, Marek DOSTÁL, Václav VYBÍHAL, Michael A VOGELBAUM, J Ross MITCHELL, Joaquim FARINHAS, Joseph A MALDJIAN, Chandan Ganesh Bangalore YOGANANDA, Marco C PINHO, Divya REDDY, James HOLCOMB, Benjamin C WAGNER, Benjamin M ELLINGSON, Timothy F CLOUGHESY, Catalina RAYMOND, Talia OUGHOURLIAN, Akifumi HAGIWARA, Chencai WANG, Minh-Son TO, Sargam BHARDWAJ, Chee CHONG, Marc AGZARIAN, Alexandre Xavier FALCÃO, Samuel B MARTINS, Bernardo C A TEIXEIRA, Flávia SPRENGER, David MENOTTI, Diego R LUCIO, Pamela LAMONTAGNE, Daniel MARCUS, Benedikt WIESTLER, Florian KOFLER, Ivan EZHOV, Marie METZ, Rajan JAIN, Matthew LEE, Yvonne W LUI, Richard MCKINLEY, Johannes SLOTBOOM, Piotr RADOJEWSKI, Raphael MEIER, Roland WIEST, Derrick MURCIA, Eric FU, Rourke HAAS, John THOMPSON, David Ryan ORMOND, Chaitra BADVE, Andrew E SLOAN, Vachan VADMAL, Kristin WAITE, Rivka R COLEN, Linmin PEI, Murat AK, Ashok SRINIVASAN, J Rajiv BAPURAJ, Arvind RAO, Nicholas WANG, Ota YOSHIAKI, Toshio MORITANI, Sevcan TURK, Joonsang LEE, Snehal PRABHUDESAI, Fanny MORÓN, Jacob MANDEL, Konstantinos KAMNITSAS, Ben GLOCKER, Luke V M DIXON, Matthew WILLIAMS, Peter ZAMPAKIS, Vasileios PANAGIOTOPOULOS, Panagiotis TSIGANOS, Sotiris ALEXIOU, Ilias HALIASSOS, Evangelia I ZACHARAKI, Konstantinos MOUSTAKAS, Christina KALOGEROPOULOU, Dimitrios M KARDAMAKIS, Yoon Seong CHOI, Seung-Koo LEE, Jong Hee CHANG, Sung Soo AHN, Bing LUO, Laila POISSON, Ning WEN, Pallavi TIWARI, Ruchika VERMA, Rohan BAREJA, Ipsa YADAV, Jonathan CHEN, Neeraj KUMAR, Marion SMITS, Sebastian R VAN DER VOORT, Ahmed ALAFANDI, Fatih INCEKARA, Maarten M J WIJNENGA, Georgios KAPSAS, Renske GAHRMANN, Joost W SCHOUTEN, Hendrikus J DUBBINK, Arnaud J P E VINCENT, Martin J VAN DEN BENT, Pim J FRENCH, Stefan KLEIN, Yading YUAN, Sonam SHARMA, Tzu-Chi TSENG, Saba ADABI, Simone P NICLOU, Olivier KEUNEN, Ann-Christin HAU, Martin VALLIÈRES, David FORTIN, Martin LEPAGE, Bennett LANDMAN, Karthik RAMADASS, Kaiwen XU, Silky CHOTAI, Lola B CHAMBLESS, Akshitkumar MISTRY, Reid C THOMPSON, Yuriy GUSEV, Krithika BHUVANESHWAR, Anousheh SAYAH, Camelia BENCHEQROUN, Anas BELOUALI, Subha MADHAVAN, Thomas C BOOTH, Alysha CHELLIAH, Marc MODAT, Haris SHUAIB, Carmen DRAGOS, Aly ABAYAZEED, Kenneth KOLODZIEJ, Michael HILL, Ahmed ABBASSY, Shady GAMAL, Mahmoud MEKHAIMAR, Mohamed QAYATI, Mauricio REYES, Ji Eun PARK, Jihye YUN, Ho Sung KIM, Abhishek MAHAJAN, Mark MUZI, Sean BENSON, Regina G H BEETS-TAN, Jonas TEUWEN, Alejandro HERRERA-TRUJILLO, Maria TRUJILLO, William ESCOBAR, Ana ABELLO, Jose BERNAL, Jhon GÓMEZ, Joseph CHOI, Stephen BAEK, Yusung KIM, Heba ISMAEL, Bryan ALLEN, John M BUATTI, Aikaterini KOTROTSOU, Hongwei LI, Tobias WEISS, Michael WELLER, Andrea BINK, Bertrand POUYMAYOU, Hassan F SHAYKH, Joel SALTZ, Prateek PRASANNA, Sampurna SHRESTHA, Kartik M MANI, David PAYNE, Tahsin KURC, Enrique PELAEZ, Heydy FRANCO-MALDONADO, Francis LOAYZA, Sebastian QUEVEDO, Pamela GUEVARA, Esteban TORCHE, Cristobal MENDOZA, Vera FRANCO, Elvis RÍOS, Eduardo LÓPEZ, Sergio A VELASTIN, Godwin OGBOLE, Mayowa SONEYE, Dotun OYEKUNLE, Olubunmi ODAFE-OYIBOTHA, Babatunde OSOBU, Mustapha SHU'AIBU, Adeleye DORCAS, Farouk DAKO, Amber L SIMPSON, Mohammad HAMGHALAM, Jacob J PEOPLES, Ricky HU, Anh TRAN, Danielle CUTLER, Fabio Y MORAES, Michael A BOSS, James GIMPEL, Deepak Kattil VEETTIL, Kendall SCHMIDT, Brian BIALECKI, Sailaja MARELLA, Cynthia PRICE, Lisa CIMINO, Charles APGAR, Prashant SHAH, Bjoern MENZE, Jill S BARNHOLTZ-SLOAN, Jason MARTIN a Spyridon BAKAS. Federated learning enables big data for rare cancer boundary detection. Nature Communications. London: Nature Publishing Group, 2022, roč. 13, č. 7346, s. 1-17. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-022-33407-5.
Další formáty:   BibTeX LaTeX RIS
Základní údaje
Originální název Federated learning enables big data for rare cancer boundary detection
Autoři PATI, Sarthak, Ujjwal BAID, Brandon EDWARDS, Micah SHELLER, Shih-Han WANG, G Anthony REINA, Patrick FOLEY, Alexey GRUZDEV, Deepthi KARKADA, Christos DAVATZIKOS, Chiharu SAKO, Satyam GHODASARA, Michel BILELLO, Suyash MOHAN, Philipp VOLLMUTH, Gianluca BRUGNARA, Chandrakanth J PREETHA, Felix SAHM, Klaus MAIER-HEIN, Maximilian ZENK, Martin BENDSZUS, Wolfgang WICK, Evan CALABRESE, Jeffrey RUDIE, Javier VILLANUEVA-MEYER, Soonmee CHA, Madhura INGALHALIKAR, Manali JADHAV, Umang PANDEY, Jitender SAINI, John GARRETT, Matthew LARSON, Robert JERAJ, Stuart CURRIE, Russell FROOD, Kavi FATANIA, Raymond Y HUANG, Ken CHANG, Carmen Balaña QUINTERO, Jaume CAPELLADES, Josep PUIG, Johannes TRENKLER, Josef PICHLER, Georg NECKER, Andreas HAUNSCHMIDT, Stephan MECKEL, Gaurav SHUKLA, Spencer LIEM, Gregory S ALEXANDER, Joseph LOMBARDO, Joshua D PALMER, Adam E FLANDERS, Adam P DICKER, Haris I SAIR, Craig K JONES, Archana VENKATARAMAN, Meirui JIANG, Tiffany Y SO, Cheng CHEN, Pheng Ann HENG, Qi DOU, Michal KOZUBEK (203 Česká republika, garant, domácí), Filip LUX (203 Česká republika, domácí), Jan MICHÁLEK (203 Česká republika, domácí), Petr MATULA (203 Česká republika, domácí), Miloš KEŘKOVSKÝ (203 Česká republika, domácí), Tereza KOPŘIVOVÁ (203 Česká republika, domácí), Marek DOSTÁL (203 Česká republika, domácí), Václav VYBÍHAL (203 Česká republika, domácí), Michael A VOGELBAUM, J Ross MITCHELL, Joaquim FARINHAS, Joseph A MALDJIAN, Chandan Ganesh Bangalore YOGANANDA, Marco C PINHO, Divya REDDY, James HOLCOMB, Benjamin C WAGNER, Benjamin M ELLINGSON, Timothy F CLOUGHESY, Catalina RAYMOND, Talia OUGHOURLIAN, Akifumi HAGIWARA, Chencai WANG, Minh-Son TO, Sargam BHARDWAJ, Chee CHONG, Marc AGZARIAN, Alexandre Xavier FALCÃO, Samuel B MARTINS, Bernardo C A TEIXEIRA, Flávia SPRENGER, David MENOTTI, Diego R LUCIO, Pamela LAMONTAGNE, Daniel MARCUS, Benedikt WIESTLER, Florian KOFLER, Ivan EZHOV, Marie METZ, Rajan JAIN, Matthew LEE, Yvonne W LUI, Richard MCKINLEY, Johannes SLOTBOOM, Piotr RADOJEWSKI, Raphael MEIER, Roland WIEST, Derrick MURCIA, Eric FU, Rourke HAAS, John THOMPSON, David Ryan ORMOND, Chaitra BADVE, Andrew E SLOAN, Vachan VADMAL, Kristin WAITE, Rivka R COLEN, Linmin PEI, Murat AK, Ashok SRINIVASAN, J Rajiv BAPURAJ, Arvind RAO, Nicholas WANG, Ota YOSHIAKI, Toshio MORITANI, Sevcan TURK, Joonsang LEE, Snehal PRABHUDESAI, Fanny MORÓN, Jacob MANDEL, Konstantinos KAMNITSAS, Ben GLOCKER, Luke V M DIXON, Matthew WILLIAMS, Peter ZAMPAKIS, Vasileios PANAGIOTOPOULOS, Panagiotis TSIGANOS, Sotiris ALEXIOU, Ilias HALIASSOS, Evangelia I ZACHARAKI, Konstantinos MOUSTAKAS, Christina KALOGEROPOULOU, Dimitrios M KARDAMAKIS, Yoon Seong CHOI, Seung-Koo LEE, Jong Hee CHANG, Sung Soo AHN, Bing LUO, Laila POISSON, Ning WEN, Pallavi TIWARI, Ruchika VERMA, Rohan BAREJA, Ipsa YADAV, Jonathan CHEN, Neeraj KUMAR, Marion SMITS, Sebastian R VAN DER VOORT, Ahmed ALAFANDI, Fatih INCEKARA, Maarten M J WIJNENGA, Georgios KAPSAS, Renske GAHRMANN, Joost W SCHOUTEN, Hendrikus J DUBBINK, Arnaud J P E VINCENT, Martin J VAN DEN BENT, Pim J FRENCH, Stefan KLEIN, Yading YUAN, Sonam SHARMA, Tzu-Chi TSENG, Saba ADABI, Simone P NICLOU, Olivier KEUNEN, Ann-Christin HAU, Martin VALLIÈRES, David FORTIN, Martin LEPAGE, Bennett LANDMAN, Karthik RAMADASS, Kaiwen XU, Silky CHOTAI, Lola B CHAMBLESS, Akshitkumar MISTRY, Reid C THOMPSON, Yuriy GUSEV, Krithika BHUVANESHWAR, Anousheh SAYAH, Camelia BENCHEQROUN, Anas BELOUALI, Subha MADHAVAN, Thomas C BOOTH, Alysha CHELLIAH, Marc MODAT, Haris SHUAIB, Carmen DRAGOS, Aly ABAYAZEED, Kenneth KOLODZIEJ, Michael HILL, Ahmed ABBASSY, Shady GAMAL, Mahmoud MEKHAIMAR, Mohamed QAYATI, Mauricio REYES, Ji Eun PARK, Jihye YUN, Ho Sung KIM, Abhishek MAHAJAN, Mark MUZI, Sean BENSON, Regina G H BEETS-TAN, Jonas TEUWEN, Alejandro HERRERA-TRUJILLO, Maria TRUJILLO, William ESCOBAR, Ana ABELLO, Jose BERNAL, Jhon GÓMEZ, Joseph CHOI, Stephen BAEK, Yusung KIM, Heba ISMAEL, Bryan ALLEN, John M BUATTI, Aikaterini KOTROTSOU, Hongwei LI, Tobias WEISS, Michael WELLER, Andrea BINK, Bertrand POUYMAYOU, Hassan F SHAYKH, Joel SALTZ, Prateek PRASANNA, Sampurna SHRESTHA, Kartik M MANI, David PAYNE, Tahsin KURC, Enrique PELAEZ, Heydy FRANCO-MALDONADO, Francis LOAYZA, Sebastian QUEVEDO, Pamela GUEVARA, Esteban TORCHE, Cristobal MENDOZA, Vera FRANCO, Elvis RÍOS, Eduardo LÓPEZ, Sergio A VELASTIN, Godwin OGBOLE, Mayowa SONEYE, Dotun OYEKUNLE, Olubunmi ODAFE-OYIBOTHA, Babatunde OSOBU, Mustapha SHU'AIBU, Adeleye DORCAS, Farouk DAKO, Amber L SIMPSON, Mohammad HAMGHALAM, Jacob J PEOPLES, Ricky HU, Anh TRAN, Danielle CUTLER, Fabio Y MORAES, Michael A BOSS, James GIMPEL, Deepak Kattil VEETTIL, Kendall SCHMIDT, Brian BIALECKI, Sailaja MARELLA, Cynthia PRICE, Lisa CIMINO, Charles APGAR, Prashant SHAH, Bjoern MENZE, Jill S BARNHOLTZ-SLOAN, Jason MARTIN a Spyridon BAKAS.
Vydání Nature Communications, London, Nature Publishing Group, 2022, 2041-1723.
Další údaje
Originální jazyk angličtina
Typ výsledku Článek v odborném periodiku
Obor 10201 Computer sciences, information science, bioinformatics
Stát vydavatele Velká Británie a Severní Irsko
Utajení není předmětem státního či obchodního tajemství
WWW URL
Impakt faktor Impact factor: 16.600
Kód RIV RIV/00216224:14330/22:00129718
Organizační jednotka Fakulta informatiky
Doi http://dx.doi.org/10.1038/s41467-022-33407-5
UT WoS 000984380900001
Klíčová slova anglicky Biomedical engineering; CNS cancer; Computer science; Medical imaging; Medical research
Štítky 14110216, 14110224, 14110511, cbia-web, podil
Příznaky Mezinárodní význam, Recenzováno
Změnil Změnil: RNDr. Pavel Šmerk, Ph.D., učo 3880. Změněno: 18. 8. 2023 07:58.
Anotace
Although machine learning (ML) has shown promise across disciplines, out-of-sample generalizability is concerning. This is currently addressed by sharing multi-site data, but such centralization is challenging/infeasible to scale due to various limitations. Federated ML (FL) provides an alternative paradigm for accurate and generalizable ML, by only sharing numerical model updates. Here we present the largest FL study to-date, involving data from 71 sites across 6 continents, to generate an automatic tumor boundary detector for the rare disease of glioblastoma, reporting the largest such dataset in the literature (n = 6, 314). We demonstrate a 33% delineation improvement for the surgically targetable tumor, and 23% for the complete tumor extent, over a publicly trained model. We anticipate our study to: 1) enable more healthcare studies informed by large diverse data, ensuring meaningful results for rare diseases and underrepresented populations, 2) facilitate further analyses for glioblastoma by releasing our consensus model, and 3) demonstrate the FL effectiveness at such scale and task-complexity as a paradigm shift for multi-site collaborations, alleviating the need for data-sharing.
Návaznosti
MUNI/A/1145/2021, interní kód MUNázev: Rozsáhlé výpočetní systémy: modely, aplikace a verifikace XI. (Akronym: SV-FI MAV XI.)
Investor: Masarykova univerzita, Rozsáhlé výpočetní systémy: modely, aplikace a verifikace XI.
NU21-08-00359, projekt VaVNázev: Klasifikace mozkových tumorů pomocí pokročilých metod analýzy dat multimodálního MR zobrazení difuze
Investor: Ministerstvo zdravotnictví ČR, Klasifikace mozkových tumorů pomocí pokročilých metod analýzy dat multimodálního MR zobrazení difuze, Podprogram 1 - standardní
VytisknoutZobrazeno: 26. 4. 2024 11:27