Další formáty:
BibTeX
LaTeX
RIS
@article{2253358, author = {Troják, Matej and Šafránek, David and Pastva, Samuel and Brim, Luboš}, article_number = {104843}, doi = {http://dx.doi.org/10.1016/j.biosystems.2023.104843}, keywords = {systems biology; rule-based modelling; regulations; multiset rewriting}, language = {eng}, issn = {0303-2647}, journal = {Biosystems}, title = {Rule-based Modelling of Biological Systems Using Regulated Rewriting}, url = {https://www.sciencedirect.com/science/article/pii/S0303264723000187}, volume = {225}, year = {2023} }
TY - JOUR ID - 2253358 AU - Troják, Matej - Šafránek, David - Pastva, Samuel - Brim, Luboš PY - 2023 TI - Rule-based Modelling of Biological Systems Using Regulated Rewriting JF - Biosystems VL - 225 IS - 104843 SP - 1-15 EP - 1-15 PB - Elsevier SN - 03032647 KW - systems biology KW - rule-based modelling KW - regulations KW - multiset rewriting UR - https://www.sciencedirect.com/science/article/pii/S0303264723000187 N2 - In systems biology, models play a crucial role in understanding studied systems. There are many modelling approaches, among which rewriting systems provide a framework for describing systems on a mechanistic level. Describing biochemical processes often requires incorporating knowledge on an abstract level to simplify the system description or substitute the missing details. For this purpose, we present regulation mechanisms, an extension of this formalism with additional controls on the rewriting process. We introduce several regulation mechanisms and apply them to a rule-based language, a notation suitable for modelling biological phenomena. Finally, we demonstrate the usage of such regulations on several case studies from the biochemical domain. ER -
TROJÁK, Matej, David ŠAFRÁNEK, Samuel PASTVA a Luboš BRIM. Rule-based Modelling of Biological Systems Using Regulated Rewriting. \textit{Biosystems}. Elsevier, 2023, roč.~225, č.~104843, s.~1-15. ISSN~0303-2647. Dostupné z: https://dx.doi.org/10.1016/j.biosystems.2023.104843.
|