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@inproceedings{2342098, author = {Lexa, Matej and Hegyi, Hedvig}, address = {Bratislava}, booktitle = {Workshop on Bioinformatics and Computational Biology (WBCB 2023)}, editor = {Bronislava Brejova, Matej Lexa}, keywords = {HiC analysis}, howpublished = {elektronická verze "online"}, language = {eng}, location = {Bratislava}, isbn = {978-80-8147-132-2}, pages = {14-14}, publisher = {Knižniˇcné a ediˇcné centrum, Fakulta matematiky, fyziky a informatiky, Univerzita Komenského}, title = {Alternatives to classical HiC data analysis}, url = {https://compbio.fmph.uniba.sk/epubs/proceedingsWBCB2023.pdf}, year = {2023} }
TY - JOUR ID - 2342098 AU - Lexa, Matej - Hegyi, Hedvig PY - 2023 TI - Alternatives to classical HiC data analysis PB - Knižniˇcné a ediˇcné centrum, Fakulta matematiky, fyziky a informatiky, Univerzita Komenského CY - Bratislava SN - 9788081471322 KW - HiC analysis UR - https://compbio.fmph.uniba.sk/epubs/proceedingsWBCB2023.pdf N2 - HiC is a variant of DNA library preparation and sequencing that can provide information about 3D arrangement patterns in chromatin. A typical HiC experiment involves cross-linking chromatin in vivo, fragmenting it in vitro, ligating the fragments in a proximity-dependent manner. Finally a library for paired-end sequencing is created and sequenced by short read sequencing technology [3]. The typical HiC data analysis today is to preprocess HiC sequencing reads, map them to the closest reference genome, and bin mapped pairs by genomic location to obtain a contact matrix that can be visualized. Reliable tools and pipelines exist to carry out such analyses. ER -
LEXA, Matej a Hedvig HEGYI. Alternatives to classical HiC data analysis. Online. In Bronislava Brejova, Matej Lexa. \textit{Workshop on Bioinformatics and Computational Biology (WBCB 2023)}. Bratislava: Knižniˇcné a ediˇcné centrum, Fakulta matematiky, fyziky a informatiky, Univerzita Komenského, 2023, s.~14-14. ISBN~978-80-8147-132-2.
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